ITRAQ-coupled 2-D LC-MS/MS analysis of membrane protein profile in escherichia coli incubated with Apidaecin IB

PLoS ONE

Volumn 6, Issue 6, 2011, Pages

  Zhou, Yusi ^a   Chen, Wei Ning ^a  

^a Nanyang Technological University   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

APIDAECIN IB; BACTERIUM LIPOPOLYSACCHARIDE; CYTOPLASM PROTEIN; MEMBRANE LIPID; MEMBRANE PROTEIN; POLYPEPTIDE ANTIBIOTIC AGENT; PROTEIN FTSH; PROTEINASE; UNCLASSIFIED DRUG; URIDINE DIPHOSPHATE 3 O ACYL N ACETYLGLUCOSAMINE DEACETYLASE; ANTIMICROBIAL CATIONIC PEPTIDE; APIDAECIN; ESCHERICHIA COLI PROTEIN;

ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BACTERIUM CULTURE; BIOSYNTHESIS; CATALYSIS; CELL DIVISION; ESCHERICHIA COLI; HOMEOSTASIS; ITRAQ COUPLED TWO DIMENSIONAL LIQUID CHROMATOGRAPHY MASS SPECTROMETRY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MINIMUM INHIBITORY CONCENTRATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEIN DEGRADATION; AMINO ACID SEQUENCE; CHEMISTRY; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; TANDEM MASS SPECTROMETRY; TIME;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; HEXAPODA; NEGIBACTERIA;

AMINO ACID SEQUENCE; ANTIMICROBIAL CATIONIC PEPTIDES; CHROMATOGRAPHY, LIQUID; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; TANDEM MASS SPECTROMETRY; TIME FACTORS;

EID: 79957835563     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0020442     Document Type: Article

References (37)

1. Hancock RE, Lehrer R, (1998) Cationic peptides: a new source of antibiotics. Trends Biotechnol 16: 82-88.
2. Zasloff M, (1987) Magainins, a class of antimicrobial peptides from Xenopus skin: isolation, characterization of two active forms, and partial cDNA sequence of a precursor. Proc Natl Acad Sci U S A 84: 5449-5453.
3. Nakamura T, Furunaka H, Miyata T, Tokunaga F, Muta T, et al. (1988) Tachyplesin, a class of antimicrobial peptide from the hemocytes of the horseshoe crab (Tachypleus tridentatus). Isolation and chemical structure. J Biol Chem 263: 16709-16713.
4. Selsted ME, Novotny MJ, Morris WL, Tang YQ, Smith W, et al. (1992) Indolicidin, a novel bactericidal tridecapeptide amide from neutrophils. J Biol Chem 267: 4292-4295.
5. Iwanaga S, Muta T, Shigenaga T, Seki N, Kawano K, et al. (1994) Structure-function relationships of tachyplesins and their analogues. Ciba Found Symp 186: 160-174; discussion 174-165.
6. Ahmad I, Perkins WR, Lupan DM, Selsted ME, Janoff AS, (1995) Liposomal entrapment of the neutrophil-derived peptide indolicidin endows it with in vivo antifungal activity. Biochim Biophys Acta 1237: 109-114.
7. Morvan A, Iwanaga S, Comps M, Bachere E, (1997) In Vitro Activity of the Limulus Antimicrobial Peptide Tachyplesin I on Marine Bivalve Pathogens. J Invertebr Pathol 69: 177-182.
8. Aley SB, Zimmerman M, Hetsko M, Selsted ME, Gillin FD, (1994) Killing of Giardia lamblia by cryptdins and cationic neutrophil peptides. Infect Immun 62: 5397-5403.
9. Aboudy Y, Mendelson E, Shalit I, Bessalle R, Fridkin M, (1994) Activity of two synthetic amphiphilic peptides and magainin-2 against herpes simplex virus types 1 and 2. Int J Pept Protein Res 43: 573-582.
10. Murakami T, Niwa M, Tokunaga F, Miyata T, Iwanaga S, (1991) Direct virus inactivation of tachyplesin I and its isopeptides from horseshoe crab hemocytes. Chemotherapy 37: 327-334.
11. Robinson WE Jr, McDougall B, Tran D, Selsted ME, (1998) Anti-HIV-1 activity of indolicidin, an antimicrobial peptide from neutrophils. J Leukoc Biol 63: 94-100.
12. Tossi A, Sandri L, Giangaspero A, (2000) Amphipathic, alpha-helical antimicrobial peptides. Biopolymers 55: 4-30.
13. Markossian KA, Zamyatnin AA, Kurganov BI, (2004) Antibacterial proline-rich oligopeptides and their target proteins. Biochemistry (Mosc) 69: 1082-1091.
14. Li WF, Ma GX, Zhou XX, (2006) Apidaecin-type peptides: biodiversity, structure-function relationships and mode of action. Peptides 27: 2350-2359.
15. Casteels P, Ampe C, Jacobs F, Vaeck M, Tempst P, (1989) Apidaecins: antibacterial peptides from honeybees. EMBO J 8: 2387-2391.
16. Castle M, Nazarian A, Yi SS, Tempst P, (1999) Lethal effects of apidaecin on Escherichia coli involve sequential molecular interactions with diverse targets. J Biol Chem 274: 32555-32564.
17. Otvos L Jr, O I, Rogers ME, Consolvo PJ, Condie BA, et al. (2000) Interaction between heat shock proteins and antimicrobial peptides. Biochemistry 39: 14150-14159.
18. Ogura T, Inoue K, Tatsuta T, Suzaki T, Karata K, et al. (1999) Balanced biosynthesis of major membrane components through regulated degradation of the committed enzyme of lipid A biosynthesis by the AAA protease FtsH (HflB) in Escherichia coli. Mol Microbiol 31: 833-844.
19. Anderson MS, Robertson AD, Macher I, Raetz CRH, (1988) Biosynthesis of lipid-A in Escherichia coli-identification of UDP-3-O-[(R)-3- hydroxymyristoyl]-alpha-D-glucosamine as a precursor of UDP-N,2, O-3-bis[(R)-3-hydroxymyristoyl]-alpha-D-glucosamine. Biochemistry 27: 1908-1917.
20. Anderson MS, Bull HG, Galloway SM, Kelly TM, Mohan S, et al. (1993) UDP-N-Acetylglucosamine acyltransferase of Escherichia coli-the 1st step of endotoxin biosynthesis is thermodynamically unfavorable. Journal of Biological Chemistry 268: 19858-19865.
21. Anderson MS, Raetz CRH, (1987) Biosynthsis of lipid-A precursors in Escherichia coli-a cytoplasmic acyltransferase that converts UDP-N-Acetylglucosamine to UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine. Journal of Biological Chemistry 262: 5159-5169.
22. Anderson MS, Bulawa CE, Raetz CRH, (1985) The biosynthesisi of gram-negative endotoxin-formation of lipid A precursors from UDP-GlcNAc in extracts of Escherichia coli. Journal of Biological Chemistry 260: 5536-5541.
23. Heath RJ, Rock CO, (1996) Roles of the FabA and FabZ beta-hydroxyacyl-acyl carrier protein dehydratases in Escherichia coli fatty acid biosynthesis. Journal of Biological Chemistry 271: 27795-27801.
24. Mohan S, Kelly TM, Eveland SS, Raetz CRH, Anderson MS, (1994) An Escherichia coil gene (FabZ) encoding (3R)-hydroxymyristoyl acyl carrier protein dehydrase-relation to FabA and suppression of mutations in lipid A biosynthesis. Journal of Biological Chemistry 269: 32896-32903.
25. Tomoyasu T, Gamer J, Bukau B, Kanemori M, Mori H, et al. (1995) Escherichia coi FtsH is a membrane-bound, ATP-dependent protease which degrades the heat-shock transcription factor sigma (32). Embo Journal 14: 2551-2560.
26. Fuhrer F, Muller A, Baumann H, Langklotz S, Kutscher B, et al. (2007) Sequence and length recognition of the C-terminal turnover element of LpxC, the membrane-bound FtsH a soluble substrate of protease. Journal of Molecular Biology 372: 485-496.
27. Wiegand I, Hilpert K, Hancock REW, (2008) Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances. Nature Protocols 3: 163-175.
28. Arnold T, Linke D, (2008) The use of detergents to purify membrane proteins. Curr Protoc Protein Sci Chapter 4: Unit 4 8 1-4 8 30.
29. Zhou YS, Lamrani M, Chan-Park MB, Leong SS, Chang MW, et al. (2010) iTRAQ-coupled two-dimensional liquid chromatography/tandem mass spectrometric analysis of protein profile in Escherichia coli incubated with human neutrophil peptide 1-potential in antimicrobial strategy. Rapid Commun Mass Spectrom 24: 2787-2790.
30. Sui J, Tan TL, Zhang J, Ching CB, Chen WN, (2007) iTRAQ-coupled 2D LC-MS/MS analysis on protein profile in vascular smooth muscle cells incubated with S- and R-enantiomers of propranolol: possible role of metabolic enzymes involved in cellular anabolism and antioxidant activity. J Proteome Res 6: 1643-1651.
31. Sui J, Zhang J, Tan TL, Ching CB, Chen WN, (2008) Comparative proteomics analysis of vascular smooth muscle cells incubated with S- and R-enantiomers of atenolol using iTRAQ-coupled two-dimensional LC-MS/MS. Mol Cell Proteomics 7: 1007-1018.
32. Zhang J, Sui J, Ching CB, Chen WN, (2008) Protein profile in neuroblastoma cells incubated with S- and R-enantiomers of ibuprofen by iTRAQ-coupled 2-D LC-MS/MS analysis: possible action of induced proteins on Alzheimer's disease. Proteomics 8: 1595-1607.
33. Zhang J, Niu D, Sui J, Ching CB, Chen WN, (2009) Protein profile in hepatitis B virus replicating rat primary hepatocytes and HepG2 cells by iTRAQ-coupled 2-D LC-MS/MS analysis: Insights on liver angiogenesis. Proteomics 9: 2836-2845.
34. Niu D, Sui J, Zhang J, Feng H, Chen WN, (2009) iTRAQ-coupled 2-D LC-MS/MS analysis of protein profile associated with HBV-modulated DNA methylation. Proteomics 9: 3856-3868.
35. Karkhanis YD, Zeltner JY, Jackson JJ, Carlo DJ, (1978) A new and improved microassay to determine 2-keto-3-deoxyoctonate in lipopolysaccharide of Gram-negative bacteria. Anal Biochem 85: 595-601.
36. Kloser A, Laird M, Deng M, Misra R, (1998) Modulations in lipid A and phospholipid biosynthesis pathways influence outer membrane protein assembly in Escherichia coli K-12. Mol Microbiol 27: 1003-1008.
37. Chen PS, Toribara TY, Warner H, (1956) Microdetermination of phosphorus. Analytical Chemistry 28: 1756-1758.