-
1
-
-
7044239742
-
-
10.1021/cr00023a004
-
P. Kollman, Chem. Rev. 93, 2395 (1993). 10.1021/cr00023a004
-
(1993)
Chem. Rev.
, vol.93
, pp. 2395
-
-
Kollman, P.1
-
3
-
-
0001774413
-
-
in, edited by, (World Scientific, Singapore)
-
J. Valleau, in Classical and Quantum Dynamics in Condensed Phase Simulations, edited by B. J. Berne, G. Ciccotti, and D. Cocker (World Scientific, Singapore, 1998), p. 97.
-
(1998)
Classical and Quantum Dynamics in Condensed Phase Simulations
, pp. 97
-
-
Valleau, J.1
Berne, B.J.2
Ciccotti, G.3
Cocker, D.4
-
4
-
-
4243661501
-
-
10.1016/S0009-2614(89)87314-2
-
E. A. Carter, G. Ciccotti, J. T. Hynes, and R. Kapral, Chem. Phys. Lett. 156, 472 (1989). 10.1016/S0009-2614(89)87314-2
-
(1989)
Chem. Phys. Lett.
, vol.156
, pp. 472
-
-
Carter, E.A.1
Ciccotti, G.2
Hynes, J.T.3
Kapral, R.4
-
5
-
-
79957616338
-
-
in, edited by, (World Scientific, Singapore)
-
G. Ciccotti, in Classical and Quantum Dynamics in Condensed Phase Simulations, edited by B. J. Berne, G. Ciccotti, and D. Cocker (World Scientific, Singapore, 1998), p. 159.
-
(1998)
Classical and Quantum Dynamics in Condensed Phase Simulations
, pp. 159
-
-
Ciccotti, G.1
Berne, B.J.2
Ciccotti, G.3
Cocker, D.4
-
6
-
-
0032968133
-
Implicit solvent models
-
DOI 10.1016/S0301-4622(98)00226-9, PII S0301462298002269
-
B. Roux and T. Simonson, Biophys. Chem. 78, 1 (1999). 10.1016/S0301-4622(98)00226-9 (Pubitemid 29206654)
-
(1999)
Biophysical Chemistry
, vol.78
, Issue.1-2
, pp. 1-20
-
-
Roux, B.1
Simonson, T.2
-
7
-
-
0037529067
-
Electrostatics and dynamics of proteins
-
DOI 10.1088/0034-4885/66/5/202
-
T. Simonson, Rep. Prog. Phys. 66, 737 (2003). 10.1088/0034-4885/66/5/202 (Pubitemid 36685137)
-
(2003)
Reports on Progress in Physics
, vol.66
, Issue.5
, pp. 737-787
-
-
Simonson, T.1
-
8
-
-
0029016182
-
-
10.1126/science.7761829
-
B. Honig and A. Nichols, Science 268, 1144 (1995). 10.1126/science. 7761829
-
(1995)
Science
, vol.268
, pp. 1144
-
-
Honig, B.1
Nichols, A.2
-
9
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
DOI 10.1073/pnas.181342398
-
N. A. Baker, D. Sept, S. Joseph, M. J. Holst, and J. A. McCammon, Proc. Natl. Acad. Sci. U.S.A. 98, 10037 (2001). 10.1073/pnas.181342398 (Pubitemid 32802969)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.18
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
10
-
-
0035825993
-
A dielectric continuum molecular dynamics method
-
DOI 10.1063/1.1348028
-
M. Marchi, D. Borgis, N. Lévy, and P. Ballone, J. Chem. Phys. 114, 4377 (2001). 10.1063/1.1348028 (Pubitemid 32287416)
-
(2001)
Journal of Chemical Physics
, vol.114
, Issue.10
, pp. 4377-4385
-
-
Marchi, M.1
Borgis, D.2
Levy, N.3
Ballone, P.4
-
13
-
-
34548378695
-
Application of the level-set method to the implicit solvation of nonpolar molecules
-
DOI 10.1063/1.2757169
-
L. T. Cheng, J. Dzubiella, and J. A. McCammon, J. Chem. Phys. 127, 084503 (2007). 10.1063/1.2757169 (Pubitemid 47352536)
-
(2007)
Journal of Chemical Physics
, vol.127
, Issue.8
, pp. 084503
-
-
Cheng, L.-T.1
Dzubiella, J.2
McCammon, J.A.3
Li, B.4
-
14
-
-
65249120770
-
-
10.1021/ct800297d
-
L. T. T. Cheng, Y. Xie, J. Dzubiella, J. A. McCammon, J. Che, and B. Li, J. Chem. Theory Comput. 5, 257 (2009). 10.1021/ct800297d
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 257
-
-
Cheng, L.T.T.1
Xie, Y.2
Dzubiella, J.3
McCammon, J.A.4
Che, J.5
Li, B.6
-
19
-
-
0942290099
-
-
10.1063/1.1627326
-
G. Reddy, C. P. Lawrence, J. L. Skinner, and A. Yethiraj, J. Chem. Phys. 119, 13012 (2003). 10.1063/1.1627326
-
(2003)
J. Chem. Phys.
, vol.119
, pp. 13012
-
-
Reddy, G.1
Lawrence, C.P.2
Skinner, J.L.3
Yethiraj, A.4
-
21
-
-
36849099819
-
-
10.1063/1.1678503
-
L. Blum, J. Chem. Phys. 57, 1862 (1972). 10.1063/1.1678503
-
(1972)
J. Chem. Phys.
, vol.57
, pp. 1862
-
-
Blum, L.1
-
22
-
-
0000884742
-
-
10.1080/00268977700101821
-
G. N. Patey, Mol. Phys. 34, 427 (1977). 10.1080/00268977700101821
-
(1977)
Mol. Phys.
, vol.34
, pp. 427
-
-
Patey, G.N.1
-
23
-
-
33645934660
-
-
10.1080/00268978200100822
-
S. L. Carnie and G. N. Patey, Mol. Phys. 47, 1129 (1982). 10.1080/00268978200100822
-
(1982)
Mol. Phys.
, vol.47
, pp. 1129
-
-
Carnie, S.L.1
Patey, G.N.2
-
27
-
-
36349017118
-
A site-renormalized molecular fluid theory
-
DOI 10.1063/1.2785188
-
K. M. Dyer, J. S. Perkyns, and B. M. Pettitt, J. Chem. Phys. 127, 194506 (2007). 10.1063/1.2785188 (Pubitemid 350159086)
-
(2007)
Journal of Chemical Physics
, vol.127
, Issue.19
, pp. 194506
-
-
Dyer, K.M.1
Perkyns, J.S.2
Pettitt, B.M.3
-
28
-
-
51749093938
-
-
10.1063/1.2976580
-
K. M. Dyer, J. S. Perkyns, G. Stell, and B. M. Pettitt, J. Chem. Phys. 129, 104512 (2008). 10.1063/1.2976580
-
(2008)
J. Chem. Phys.
, vol.129
, pp. 104512
-
-
Dyer, K.M.1
Perkyns, J.S.2
Stell, G.3
Pettitt, B.M.4
-
29
-
-
0001330739
-
-
10.1103/PhysRevE.48.2898
-
D. Chandler, Phys. Rev. E 48, 2898 (1993). 10.1103/PhysRevE.48.2898
-
(1993)
Phys. Rev. e
, vol.48
, pp. 2898
-
-
Chandler, D.1
-
32
-
-
0018446914
-
-
10.1080/00018737900101365
-
R. Evans, Adv. Phys. 28, 143 (1979). 10.1080/00018737900101365
-
(1979)
Adv. Phys.
, vol.28
, pp. 143
-
-
Evans, R.1
-
37
-
-
41349089274
-
Density functional theory of solvation in a polar solvent: Extracting the functional from homogeneous solvent simulations
-
DOI 10.1103/PhysRevE.66.031206, 031206
-
R. Ramirez, R. Gebauer, M. Mareschal, and D. Borgis, Phys. Rev. E 66, 306 (2002). 10.1103/PhysRevE.66.031206 (Pubitemid 40606372)
-
(2002)
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
, vol.66
, Issue.3
-
-
Ramirez, R.1
Gebauer, R.2
Mareschal, M.3
Borgis, D.4
-
38
-
-
17444404197
-
Density functional theory of solvation and its relation to implicit solvent models
-
DOI 10.1021/jp045453v
-
R. Ramirez and D. Borgis, J. Phys. Chem. B 109, 6754 (2005). 10.1021/jp045453v (Pubitemid 40538444)
-
(2005)
Journal of Physical Chemistry B
, vol.109
, Issue.14
, pp. 6754-6763
-
-
Ramirez, R.1
Borgis, D.2
-
39
-
-
28644443214
-
Direct correlation functions and the density functional theory of polar solvents
-
DOI 10.1016/j.chemphys.2005.07.038, PII S0301010405002831
-
R. Ramirez, M. Mareschal, and D. Borgis, Chem. Phys. 319, 261 (2005). 10.1016/j.chemphys.2005.07.038 (Pubitemid 41750493)
-
(2005)
Chemical Physics
, vol.319
, Issue.1-3
, pp. 261-272
-
-
Ramirez, R.1
Mareschal, M.2
Borgis, D.3
-
40
-
-
36449009010
-
-
10.1063/1.469506
-
R. D. Coalson, A. M. Walsh, A. Duncan, and N. Ben-Tal, J. Chem. Phys. 102, 4584 (1995). 10.1063/1.469506
-
(1995)
J. Chem. Phys.
, vol.102
, pp. 4584
-
-
Coalson, R.D.1
Walsh, A.M.2
Duncan, A.3
Ben-Tal, N.4
-
43
-
-
33747818624
-
PDB-Hydro: Incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics
-
DOI 10.1093/nar/gkl072
-
C. Azuara, E. Lindahl, and P. Koehl, Nucleic Acids Res. 34, 38 (2006). 10.1093/nar/gkl072 (Pubitemid 44529731)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS.
-
-
Azuara, C.1
Lindahl, E.2
Koehl, P.3
Orland, H.4
Delarue, M.5
-
44
-
-
58749107160
-
-
10.1529/biophysj.108.131649
-
C. Azuara, H. Orland, M. Bon, P. Koehl, and M. Delarue, Biophys. J. 95, 5587 (2008). 10.1529/biophysj.108.131649
-
(2008)
Biophys. J.
, vol.95
, pp. 5587
-
-
Azuara, C.1
Orland, H.2
Bon, M.3
Koehl, P.4
Delarue, M.5
-
48
-
-
61949186554
-
-
10.1021/jp807068k.
-
N. Yoshida, T. Imai, S. Phongphanphanee, A. Kovalenko, and F. Hirata, J. Phys. Chem. B 113, 873 (2009). 10.1021/jp807068k.
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 873
-
-
Yoshida, N.1
Imai, T.2
Phongphanphanee, S.3
Kovalenko, A.4
Hirata, F.5
-
49
-
-
4244202584
-
-
10.1103/PhysRevLett.63.980
-
Y. Rosenfeld, Phys. Rev. Lett. 63, 980 (1989). 10.1103/PhysRevLett.63.980
-
(1989)
Phys. Rev. Lett.
, vol.63
, pp. 980
-
-
Rosenfeld, Y.1
-
52
-
-
0037175734
-
Fundamental measure theory for hard-sphere mixtures revisited: The white bear version
-
DOI 10.1088/0953-8984/14/46/313, PII S0953898402384261
-
R. Roth, R. Evans, A. Lang, and G. Kahl, J. Phys.: Condens. Matter 14, 12063 (2002). 10.1088/0953-8984/14/46/313 (Pubitemid 35434009)
-
(2002)
Journal of Physics Condensed Matter
, vol.14
, Issue.46
, pp. 12063-12078
-
-
Roth, R.1
Evans, R.2
Lang, A.3
Kahl, G.4
-
53
-
-
0037045171
-
-
10.1063/1.1520530
-
Y. X. Yu and J. Wu, J. Chem. Phys. 117, 10156 (2002). 10.1063/1.1520530
-
(2002)
J. Chem. Phys.
, vol.117
, pp. 10156
-
-
Yu, Y.X.1
Wu, J.2
-
54
-
-
75649134244
-
-
10.1088/0953-8984/22/6/063102
-
R. Roth, J. Phys.: Condens. Matter 22, 063102 (2010). 10.1088/0953-8984/22/6/063102
-
(2010)
J. Phys.: Condens. Matter
, vol.22
, pp. 063102
-
-
Roth, R.1
-
55
-
-
0036678668
-
Density functional theory for inhomogeneous mixtures of polymeric fluids
-
DOI 10.1063/1.1491240
-
Y. Yu and J. Wu, J. Chem. Phys. 117, 2368 (2002). 10.1063/1.1491240 (Pubitemid 34916809)
-
(2002)
Journal of Chemical Physics
, vol.117
, Issue.5
, pp. 2368-2376
-
-
Yu, Y.-X.1
Wu, J.2
-
56
-
-
78651338283
-
-
10.1103/PhysRevE.82.041805
-
Z. Jin, S. Zhao, and J. Wu, Phys. Rev. E 82, 041805 (2010). 10.1103/PhysRevE.82.041805
-
(2010)
Phys. Rev. e
, vol.82
, pp. 041805
-
-
Jin, Z.1
Zhao, S.2
Wu, J.3
-
57
-
-
33846978150
-
Density-functional theory for complex fluids
-
DOI 10.1146/annurev.physchem.58.032806.104650
-
J. Wu and Z. Li, Annu. Rev. Phys. Chem. 58, 85 (2007). 10.1146/annurev.physchem.58.032806.104650 (Pubitemid 46877586)
-
(2007)
Annual Review of Physical Chemistry
, vol.58
, pp. 85-112
-
-
Wu, J.1
Li, Z.2
-
60
-
-
0001211793
-
-
10.1103/PhysRevA.45.7330
-
P. Frodl and S. Dietrich, Phys. Rev. A 45, 7330 (1992). 10.1103/PhysRevA.45.7330
-
(1992)
Phys. Rev. A
, vol.45
, pp. 7330
-
-
Frodl, P.1
Dietrich, S.2
-
64
-
-
0000990474
-
-
10.1080/00268977700101381
-
M. Dixon and P. Hutchinson, Mol. Phys. 33, 1663 (1977). 10.1080/00268977700101381
-
(1977)
Mol. Phys.
, vol.33
, pp. 1663
-
-
Dixon, M.1
Hutchinson, P.2
-
65
-
-
79957626196
-
-
Ph.D. thesis, Université d'Evry-Val-d'Essonne, Evry, France
-
L. Gendre, Density functional theory of molecular liquids: Application to solvation in polar solvents, Ph.D. thesis, Université d'Evry-Val-d'Essonne, Evry, France, 2008.
-
(2008)
Density functional theory of molecular liquids: Application to solvation in polar solvents
-
-
Gendre, L.1
-
67
-
-
0034635944
-
-
10.1016/S0010-4655(99)00496-8
-
K. Refson, Comp. Phys. Comm. 126, 309 (2000). 10.1016/S0010-4655(99) 00496-8
-
(2000)
Comp. Phys. Comm.
, vol.126
, pp. 309
-
-
Refson, K.1
-
69
-
-
0032572125
-
Monte Carlo investigations of selective anion complexation by a bis(phenylurea) p-tert-butylcalix[4]arene
-
DOI 10.1021/ja980140x
-
N. A. McDonald, E. M. Duffy, and W. L. Jorgensen, J. Am. Chem. Soc. 120, 5104 (1998). 10.1021/ja980140x (Pubitemid 28281204)
-
(1998)
Journal of the American Chemical Society
, vol.120
, Issue.20
, pp. 5104-5111
-
-
McDonald, N.A.1
Duffy, E.M.2
Jorgensen, W.L.3
-
74
-
-
4243754961
-
-
10.1103/PhysRevB.31.5262
-
F. H. Stillinger, Phys. Rev. B 31, 5262 (1985). 10.1103/PhysRevB.31.5262
-
(1985)
Phys. Rev. B
, vol.31
, pp. 5262
-
-
Stillinger, F.H.1
-
75
-
-
0001751427
-
-
10.1063/1.1678651
-
J. D. Ramshaw, J. Chem. Phys. 57, 2684 (1972). 10.1063/1.1678651
-
(1972)
J. Chem. Phys.
, vol.57
, pp. 2684
-
-
Ramshaw, J.D.1
-
76
-
-
36749115865
-
-
10.1063/1.434334
-
J. D. Ramshaw, J. Chem. Phys. 66, 3134 (1977). 10.1063/1.434334
-
(1977)
J. Chem. Phys.
, vol.66
, pp. 3134
-
-
Ramshaw, J.D.1
-
77
-
-
0000301294
-
-
10.1021/jp982638r
-
M. D. Tissandier, K. A. Cowen, W. Y. Feng, E. Gundlach, M. Cohen, A. D. Earhart, and J. V. Coe, J. Phys. Chem. A 102, 7787 (1998). 10.1021/jp982638r
-
(1998)
J. Phys. Chem. A
, vol.102
, pp. 7787
-
-
Tissandier, M.D.1
Cowen, K.A.2
Feng, W.Y.3
Gundlach, E.4
Cohen, M.5
Earhart, A.D.6
Coe, J.V.7
|