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Volumn 8, Issue 4, 2011, Pages 1029-1040

Metrics on multilabeled trees: Interrelationships and diameter bounds

Author keywords

diameter bound.; domination; metric; MUL tree; Multilabeled tree; tree space

Indexed keywords

DIAMETER BOUND.; DOMINATION; METRIC; MUL-TREE; MULTILABELED TREE; TREE SPACE;

EID: 79957605290     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2010.122     Document Type: Article
Times cited : (28)

References (44)
  • 1
    • 33646013264 scopus 로고    scopus 로고
    • Phylogenetic networks from multi- labeled trees
    • K.T. Huber and V. Moulton, "Phylogenetic Networks from Multi- Labeled Trees," J. Math. Biology, vol. 52, pp. 613-632, 2006
    • (2006) J. Math. Biology , vol.52 , pp. 613-632
    • Huber, K.T.1    Moulton, V.2
  • 4
    • 84963057059 scopus 로고
    • Quantitative cladistic biogeography: Constructing and comparing area cladograms
    • R. Page, "Quantitative Cladistic Biogeography: Constructing and Comparing Area Cladograms," Systematic Zoology, vol. 37, pp. 254-270, 1988
    • (1988) Systematic Zoology , vol.37 , pp. 254-270
    • Page, R.1
  • 5
    • 2342651581 scopus 로고    scopus 로고
    • Bayesian gene/species tree reconciliation and orthology analysis using MCMC
    • L. Arvestad, A.-C. Berglund, J. Lagergren, and B. Sennblad, "Bayesian Gene/Species Tree Reconciliation and Orthology Analysis Using MCMC," Bioinformatics, vol. 19, pp. 7-15, 2003
    • (2003) Bioinformatics , vol.19 , pp. 7-15
    • Arvestad, L.1    Berglund, A.-C.2    Lagergren, J.3    Sennblad, B.4
  • 8
    • 20744455385 scopus 로고    scopus 로고
    • Origin and evolution of a circumpolar polyploid species complex in Silene (Caryophyllaceae) inferred from low copy nuclear RNA polymerase introns, rDNA, and chloroplast DNA
    • DOI 10.1600/0363644054223648
    • M. Popp, P. Erixon, F. Eggens, and B. Oxelman, "Origin and Evolution of a Circumpolar Polyploid Species Complex in Silene (Caryophyllaceae) Inferred from Low Copy Nuclear RNA Polymerase Introns, rDNA, and Chloroplast DNA," Systematic Botany, vol. 30, pp. 302-313, 2005 (Pubitemid 40850168)
    • (2005) Systematic Botany , vol.30 , Issue.2 , pp. 302-313
    • Popp, M.1    Erixon, P.2    Eggens, F.3    Oxelman, B.4
  • 9
    • 0242360778 scopus 로고    scopus 로고
    • Discovering frequent substructures in large unordered trees
    • Springer
    • T. Asai, H. Arimura, T. Uno, and S. Nakano, "Discovering Frequent Substructures in Large Unordered Trees," Discovery Science, pp. 47-61, Springer, 2003
    • (2003) Discovery Science , pp. 47-61
    • Asai, T.1    Arimura, H.2    Uno, T.3    Nakano, S.4
  • 10
    • 17844379745 scopus 로고    scopus 로고
    • MMDT: A multi-valued and multi-labeled decision tree classifier for data mining
    • DOI 10.1016/j.eswa.2004.12.035, PII S0957417404001836
    • S. Chou and C.-L. Hsu, "MMDT: A Multi-Valued and Multi- Labeled Decision Tree Classifier for Data Mining," Expert Systems with Applications, vol. 28, pp. 799-812, 2005 (Pubitemid 40583857)
    • (2005) Expert Systems with Applications , vol.28 , Issue.4 , pp. 799-812
    • Chou, S.1    Hsu, C.-L.2
  • 11
    • 84947758465 scopus 로고    scopus 로고
    • Direct construction of compact directed acyclic word graphs
    • Combinatorial Pattern Matching
    • M. Crochemore and R. Verin, "Direct Construction of Compact Directed Acyclic Word Graphs," Proc. Ann. Symp. Combinatorial Pattern Matching, pp. 116-129, 1997 (Pubitemid 127097474)
    • (1997) Proc. Ann. Symp. Combinatorial Pattern Matching , Issue.1264 , pp. 116-129
    • Crochemore, M.1    Verin, R.2
  • 12
    • 0347512294 scopus 로고    scopus 로고
    • Subtree transfer operations and their induced metrics on evolutionary trees
    • B. Allen and M. Steel, "Subtree Transfer Operations and Their Induced Metrics on Evolutionary Trees," Annals of Combinatorics, vol. 5, pp. 1-15, 2001
    • (2001) Annals of Combinatorics , vol.5 , pp. 1-15
    • Allen, B.1    Steel, M.2
  • 13
    • 0040400455 scopus 로고
    • Comparing the shapes of trees
    • Springer
    • A. Dobson, "Comparing the Shapes of Trees," Combinatorial Mathematics III, vol. 452, pp. 95-100, Springer, 1975
    • (1975) Combinatorial Mathematics III , vol.452 , pp. 95-100
    • Dobson, A.1
  • 14
    • 0019424782 scopus 로고
    • Comparison of phylogenetic trees
    • DOI 10.1016/0025-5564(81)90043-2
    • D. Robinson and L. Foulds, "Comparison of Phylogenetic Trees," Math. Biosciences, vol. 53, pp. 131-147, 1981 (Pubitemid 11129084)
    • (1981) Mathematical Biosciences , vol.53 , Issue.1-2 , pp. 131-147
    • Robinson, D.F.1    Foulds, L.R.2
  • 15
    • 0002757548 scopus 로고
    • Computing the nearest neighbor interchange metric for unlabeled binary trees Is NP-complete
    • M. Křivánek, "Computing the Nearest Neighbor Interchange Metric for Unlabeled Binary Trees Is NP-Complete," J. Classification, vol. 3, pp. 55-60, 1986
    • (1986) J. Classification , vol.3 , pp. 55-60
    • Křivánek, M.1
  • 16
    • 34547969955 scopus 로고    scopus 로고
    • A geometric approach to tree shape statistics
    • F. Matsen, "A Geometric Approach to Tree Shape Statistics," Systematic Biology, vol. 55, pp. 652-661, 2006
    • (2006) Systematic Biology , vol.55 , pp. 652-661
    • Matsen, F.1
  • 19
    • 65449148286 scopus 로고    scopus 로고
    • Using tree diversity to compare phylogenetic heuristics
    • S.-J. Sul, S. Matthews, and T. Williams, "Using Tree Diversity to Compare Phylogenetic Heuristics," BMC Bioinformatics, vol. 10, 2009
    • (2009) BMC Bioinformatics , vol.10
    • Sul, S.-J.1    Matthews, S.2    Williams, T.3
  • 20
    • 34548633617 scopus 로고    scopus 로고
    • New approaches to phylogenetic tree search and their application to large numbers of protein alignments
    • DOI 10.1080/10635150701611134, PII 781940145
    • S. Whelan, "New Approaches to Phylogenetic Tree Search and Their Application to Large Numbers of Protein Alignments," Systematic Biology, vol. 56, pp. 727-740, 2007 (Pubitemid 47402906)
    • (2007) Systematic Biology , vol.56 , Issue.5 , pp. 727-740
    • Whelan, S.1
  • 22
    • 22844442543 scopus 로고    scopus 로고
    • Analysis and visualization of tree space
    • DOI 10.1080/10635150590946961
    • D. Hillis, T. Heath, and K. St. John, "Analysis and Visualization of Tree Space," Systematic Biology, vol. 54, pp. 471-482, 2005 (Pubitemid 41040445)
    • (2005) Systematic Biology , vol.54 , Issue.3 , pp. 471-482
    • Hillis, D.M.1    Heath, T.A.2    St. John, K.3
  • 23
    • 33747594798 scopus 로고
    • Vicariant patterns and historical explanation in biogeography
    • D. Rosen, "Vicariant Patterns and Historical Explanation in Biogeography," Systematic Zoology, vol. 27, pp. 159-188, 1978
    • (1978) Systematic Zoology , vol.27 , pp. 159-188
    • Rosen, D.1
  • 26
    • 12044252586 scopus 로고
    • Distributions of tree comparison metrics-some new results
    • M. Steel and D. Penny, "Distributions of Tree Comparison Metrics-Some New Results," Systematic Biology, vol. 42, pp. 126-141, 1993
    • (1993) Systematic Biology , vol.42 , pp. 126-141
    • Steel, M.1    Penny, D.2
  • 28
    • 77952239806 scopus 로고    scopus 로고
    • A metric on the space of reduced phylogenetic networks
    • Apr.-June
    • L. Nakhleh, "A Metric on the Space of Reduced Phylogenetic Networks," IEEE/ACM Trans. Computational Biology and Bioinformatics, vol. 7, no. 2, pp. 218-222, Apr.-June 2010
    • (2010) IEEE/ACM Trans. Computational Biology and Bioinformatics , vol.7 , Issue.2 , pp. 218-222
    • Nakhleh, L.1
  • 30
    • 0028032837 scopus 로고
    • The agreement metric for labeled binary trees
    • DOI 10.1016/0025-5564(94)90012-4
    • W. Goddard, E. Kubicka, G. Kubicki, and F. McMorris, "The Agreement Metric for Labeled Binary Trees," Math. Biosciences, vol. 123, pp. 215-226, 1994 (Pubitemid 24338188)
    • (1994) Mathematical Biosciences , vol.123 , Issue.2 , pp. 215-226
    • Goddard, W.1
  • 31
    • 0030311519 scopus 로고    scopus 로고
    • The triples distance for rooted bifurcating phylogenetic trees
    • D. Critchlow, D. Pearl, and C. Qian, "The Triples Distance for Rooted Bifurcating Phylogenetic Trees," Systematic Biology, vol. 45, pp. 323-334, 1996
    • (1996) Systematic Biology , vol.45 , pp. 323-334
    • Critchlow, D.1    Pearl, D.2    Qian, C.3
  • 33
    • 13844266486 scopus 로고    scopus 로고
    • On the computational complexity of the rooted subtree prune and regraft distance
    • M. Bordewich and C. Semple, "On the Computational Complexity of the Rooted Subtree Prune and Regraft Distance," Annals of Combinatorics, vol. 8, pp. 409-423, 2004
    • (2004) Annals of Combinatorics , vol.8 , pp. 409-423
    • Bordewich, M.1    Semple, C.2
  • 34
    • 0003080472 scopus 로고
    • Comparison of labeled trees with valency three
    • D. Robinson, "Comparison of Labeled Trees with Valency Three," J. Combinatorial Theory, Series B, vol. 11, pp. 105-119, 1971
    • (1971) J. Combinatorial Theory, Series B , vol.11 , pp. 105-119
    • Robinson, D.1
  • 35
    • 0025299784 scopus 로고
    • Reconstructing evolution of sequences subject to recombination using parsimony
    • DOI 10.1016/0025-5564(90)90123-G
    • J. Hein, "Reconstructing Evolution of Sequences Subject to Recombination Using Parsimony," Math. Biosciences, vol. 98, pp. 185-200, 1990 (Pubitemid 20171457)
    • (1990) Mathematical Biosciences , vol.98 , Issue.2 , pp. 185-200
    • Hein, J.1
  • 36
    • 33645575133 scopus 로고    scopus 로고
    • The splits in the neighborhood of a tree
    • D. Bryant, "The Splits in the Neighborhood of a Tree," Annals of Combinatorics, vol. 8, pp. 1-11, 2004
    • (2004) Annals of Combinatorics , vol.8 , pp. 1-11
    • Bryant, D.1
  • 37
    • 26844458739 scopus 로고    scopus 로고
    • RIATA-HGT: A fast and accurate heuristic for reconstructing horizontal gene transfer
    • Computing and Combinatorics: 11th Annual International Conference, COCOON 2005. Proceedings
    • L. Nakhleh, D. Ruths, and L. Wang, "RIATA-HGT: A Fast and Accurate Heuristic for Reconstructing Horizontal Gene Transfer," Proc. Ann. Int'l Conf. Computing and Combinatorics, pp. 84-93, 2005 (Pubitemid 41450189)
    • (2005) Lecture Notes in Computer Science , vol.3595 , pp. 84-93
    • Nakhleh, L.1    Ruths, D.2    Wang, L.-S.3
  • 38
    • 0030597058 scopus 로고    scopus 로고
    • On the nearest neighbour interchange distance between evolutionary trees
    • DOI 10.1006/jtbi.1996.0188
    • M. Li, J. Tromp, and L. Zhang, "On the Nearest Neighbour Interchange Distance between Evolutionary Trees," J. Theoretical Biology, vol. 182, pp. 463-467, 1996 (Pubitemid 26375697)
    • (1996) Journal of Theoretical Biology , vol.182 , Issue.4 , pp. 463-467
    • Li, M.1    Tromp, J.2    Zhang, L.3
  • 39
    • 84968502341 scopus 로고
    • Rotation distance, triangulations, and hyperbolic geometry
    • D. Sleator, R. Tarjan, and W. Thurston, "Rotation Distance, Triangulations, and Hyperbolic Geometry," J. Am. Math. Soc., vol. 1, pp. 647-681, 1988
    • (1988) J. Am. Math. Soc , vol.1 , pp. 647-681
    • Sleator, D.1    Tarjan, R.2    Thurston, W.3
  • 40
    • 47549114831 scopus 로고    scopus 로고
    • An exact algorithm for the geodesic distance between phylogenetic trees
    • DOI 10.1089/cmb.2008.0068
    • A. Kupczok, A. von Haeseler, and S. Klaere, "An Exact Algorithm for the Geodesic Distance between Phylogenetic Trees," J. Computational Biology, vol. 15, pp. 577-591, 2008 (Pubitemid 352009949)
    • (2008) Journal of Computational Biology , vol.15 , Issue.6 , pp. 577-591
    • Kupczok, A.1    Haeseler, A.V.2    Klaere, S.3
  • 41
    • 70349131992 scopus 로고    scopus 로고
    • An improved bound on the maximum agreement subtree problem
    • M. Steel and L. Székely, "An Improved Bound on the Maximum Agreement Subtree Problem," Applied Math. Letters, vol. 22, pp. 1778-1780, 2009
    • (2009) Applied Math. Letters , vol.22 , pp. 1778-1780
    • Steel, M.1    Székely, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.