A novel 2D graphical representation of protein sequence based on individual amino acid

International Journal of Quantum Chemistry

Volumn 111, Issue 12, 2011, Pages 2835-2843

  Yu, Jia Feng ^a,b   Sun, Xiao ^a   Wang, Ji Hua ^b  

^a SOUTHEAST UNIVERSITY   (China)

^b DEZHOU UNIVERSITY   (China)

Author keywords

graphical representation; hydropathy index; isoelectric point; numerical descriptor; protein sequence

Indexed keywords

GRAPHICAL REPRESENTATIONS; HYDROPATHY INDEX; ISOELECTRIC POINT; NUMERICAL DESCRIPTOR; PROTEIN SEQUENCE;

AMINO ACIDS; ELECTRIC PROPERTIES; GRAPHIC METHODS;

PROTEINS;

EID: 79957601831     PISSN: 00207608     EISSN: 1097461X     Source Type: Journal    
DOI: 10.1002/qua.22709     Document Type: Article

References (23)

1. Hamori, E.; Ruskin, J., J Biol Chem 1983, 258, 1318.
2. Randić, M.; Vračko, M.; Lerš, N.; Plavšić, D., Chem Phys Lett 2003, 368, 1.
3. Yao, Y. H.; Nan, X. Y.; Wang, T. M., J Mol Struct 2006, 764, 101.
4. Liao, B.; Ding, K. Q., Theor Comput Sci 2006, 358, 56.
5. Nandy, A.; Harle, M.; Basak, S. C., ARKIVOC 2006, 9, 211.
6. Yu, J. F.; Sun, X.; Wang, J. H., J Theor Biol 2009, 261, 459.
7. Yu, J. F.; Wang, J. H.; Sun, X., MATCH Commun Math Comput Chem 2010, 63, 493.
8. Shih, C. T.; Su, Z. Y.; Gwan, J. F.; Hao, B. L.; Hsich, C. H.; Lo, J. L.; Lee, H. C., Phys Rev E 2002, 65, 041923.
9. Fink, A. L., Curr Opin Struct Biol 2005, 15, 35.
10. Xie, H.; Vucetic, S.; Iakoucheva, L. M.; Oldfield, C. J.; Dunker, A. K.; Uversky, V. N.; Obradovic, Z., J Proteome Res 2007, 6, 1882.
11. Vucetic, S.; Xie, H.; Iakoucheva, L. M.; Oldfield, C. J.; Dunker, A. K.; Obradovic, Z.; Uversky, V. N., J Proteome Res 2007, 6, 1899.
12. Xie, H.; Vucetic, S.; Iakoucheva, L. M.; Oldfield, C. J.; Dunker, A. K.; Obradovic, Z.; Uversky, V. N., J Proteome Res 2007, 6, 1917.
13. Wang, J. H.; Cao, Z. X.; Li, S. Q., Curr Comput Aided Drug Des 2009, 5, 280.
14. Jeffrey, H. J., Nucleic Acids Res 1990, 18, 2163.
15. Basu, S.; Pan, A.; Dutta, C., J Mol Graph Model 1997, 15, 279.
16. Yu, Z. G.; Anh, V.; Lau, K. S., J Theor Biol 2004, 226, 341.
17. Randić, M.; Butina, D.; Zupan, J., Chem Phys Lett 2006, 419, 528.
18. Zupan, J.; Randić, M., J Chem Inf Model 2005, 45, 309.
19. Randić, M.; Mehulić, K.; Vukicević, D.; Pisanski, T.; Vikić-Topić, D.; Plavšić, D., J Mol Graph Model 2009, 27, 637.
20. Li, C.; Xing, L. L.; Wang, X., BMB Rep 2008, 41, 217.
21. Randić, M., Chem Phys Lett 2007, 444, 176.
22. Yao, Y. H.; Dai, Q.; Li, C.; He, P. A.; Nan, X. Y.; Zhang, Y. Z., Proteins 2008, 73, 864.
23. Yao, Y. H.; Dai, Q.; Li, L.; Nan, X. Y.; He, P. A.; Zhang, Y. Z., J Comput Chem 2010, 31, 1045.