An acetylation-mono-ubiquitination switch on lysine 120 of H2B

Epigenetics

Volumn 6, Issue 5, 2011, Pages 630-637

  Gatta, Raffaella ^a   Dolfini, Diletta ^a   Zambelli, Federico ^a   Imbriano, Carol ^b   Pavesi, Giulio ^a   Mantovani, Roberto ^a  

^a UNIVERSITY OF MILAN   (Italy)

^b UNIVERSITY OF MODENA AND REGGIO EMILIA   (Italy)

Author keywords

Chromatin; Histone acetylation; Histone ubiquitination; KAT3; MNase I ChIP seq

Indexed keywords

ACYLTRANSFERASE; HISTONE ACETYLTRANSFERASE PCAF; HISTONE H2B; LYSINE; LYSINE ACETYLTRANSFERASE 3; UNCLASSIFIED DRUG;

ARTICLE; CHROMATIN; ENDOPLASMIC RETICULUM STRESS; GENE INACTIVATION; GENE LOCATION; HISTONE ACETYLATION; HISTONE METHYLATION; HUMAN; HUMAN CELL; NUCLEOSOME; PROMOTER REGION; PROTEIN PROCESSING; RNA INTERFERENCE; UBIQUITINATION;

EID: 79957574184     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.4161/epi.6.5.15623     Document Type: Article

References (29)

1. Berger SL. The complex language of chromatin regulation during transcription. Nature 2007; 447: 407-12.
2. Wang Z, Schones DE, Zhao K. Characterization of human epigenomes. Curr Opin Genet Dev 2009; 19: 127-34.
3. Allis CD, Berger SL, Cote J, Dent S, Jenuwien T, Kouzarides T, et al. New nomenclature for chromatinmodifying enzymes. Cell 2007; 131: 633-6.
4. Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, et al. Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 2009; 138: 1019-31.
5. Laribee RN, Fuchs SM, Strahl BD. H2B ubiquitylation in transcriptional control: a FACT-finding mission. Genes Dev 2007; 21: 737-43.
6. Weake VM, Workman JL. Histone ubiquitination: triggering gene activity. Mol Cell 2008; 29: 653-63.
7. Minsky N, Shema E, Field Y, Schuster M, Segal E, Oren M. Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells. Nat Cell Biol 2008; 10: 483-8.
8. Kim J, Guermah M, McGinty RK, Lee JS, Tang Z, Milne TA, et al. RAD6-Mediated transcriptioncoupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells. Cell 2009; 137: 459-71.
9. Shilatifard A. Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression. Annu Rev Biochem 2006; 75: 243-69.
10. Nakanishi S, Lee JS, Gardner KE, Gardner JM, Takahashi YH, Chandrasekharan MB, et al. Histone H2BK123 monoubiquitination is the critical determinant for H3K4 and H3K79 trimethylation by COMPASS and Dot1. J Cell Biol 2009; 186: 371-7.
11. Cosgrove MS, Boeke JD, Wolberger C. Regulated nucleosome mobility and the histone code. Nat Struct Mol Biol 2004; 11: 1037-43.
12. Wang Z, Zang C, Rosenfeld JA, Schones DE, Barski A, Cuddapah S, et al. Combinatorial patterns of histone acetylations and methylations in the human genome. Nat Genet 2008; 40: 897-903.
13. Gatta R, Mantovani R. Single nucleosome ChIPs identify an extensive switch in cell cycle promoters. Cell Cycle 2010; 9: 2149-59.
14. Gatta R, Mantovani R. NF-Y substitutes H2A-H2B on active cell cycle promoters: recruitment of CoREST-KDM1 and fine-tuning of H3 methylations. Nucleic Acids Res 2008; 36: 6592-607.
15. Donati G, Imbriano C, Mantovani R. Dynamic recruitment of transcription factors and epigenetic changes on the ER stress response gene promoters. Nucleic Acids Res 2006; 34: 3116-27.
16. Balasubramanyam K, Varier RA, Altaf M, Swaminathan V, Siddappa NB, Ranga U, et al. Curcumin, a novel p300/CREB-binding protein-specific inhibitor of acetyltransferase, represses the acetylation of histone/ nonhistone proteins and histone acetyltransferasedependent chromatin transcription. J Biol Chem 2004; 279: 51163-71.
17. Das C, Lucia MS, Hansen KC, Tyler JK. CBP/ p300-mediated acetylation of histone H3 on lysine 56. Nature 2009; 459: 113-7.
18. Kikuchi H, Takami Y, Nakayama T GCN5: a supervisor in all-inclusive control of vertebrate cell cycle progression through transcription regulation of various cell cycle-related genes. Gene 2005; 347: 83-97.
19. Pasini D, Malatesta M, Jung HR, Walfridsson J, Willer A, Olsson L, et al. Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes. Nucleic Acids Res 2010; 38: 4958-69.
20. Tie F, Banerjee R, Stratton CA, Prasad-Sinha J, Stepanik V, Zlobin A, et al. CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing. Development 2009; 136: 3131-41.
21. 1/S and cycling K79me2. Mol Cell 2009; 35: 729-30.
22. Sadoul K, Boyault C, Pabion M, Khochbin S. Regulation of protein turnover by acetyltransferases and deacetylases. Biochimie 2008; 90: 306-12.
23. Osley MA. Regulation of histone H2A and H2B ubiquitylation. Brief Funct. Genomic Proteomic 2006; 5: 179-89.
24. Carrozza MJ, Li B, Florens L, Suganuma T, Swanson SK, Lee KK, et al. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 2005; 123: 581-92.
25. Chan HM, La Thangue NB. p300/CBP proteins: HATs for transcriptional bridges and scaffolds. J Cell Sci 2001; 114: 2363-73.
26. Luger K. Structure and dynamic behavior of nucleosomes. Curr Opin Genet Dev 2004; 13: 127-35.
27. Zhang F, Yu X. WAC, a functional partner of RNF20/40, regulates histone H2B ubiquitination and gene transcription. Mol Cell 2011; 41: 384-97.
28. Schmidt D, Wilson MD, Spyrou C, Brown GD, Hadfield J, Odom DT ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. Methods 2009; 48: 240-8.
29. Jiang H, Wong WH. SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics 2008; 24: 2395-6.