Application of real-time PCR assay for detection and quantification of bloom-forming diatom Chaetoceros tenuissimus Meunier

Plankton and Benthos Research

Volumn 5, Issue 2, 2010, Pages 56-61

  Toyoda, Kensuke ^a   Nagasaki, Keizo ^a   Tomaru, Yuji ^a  

^a FISHERIES RESEARCH AGENCY   (Japan)

Author keywords

Chaetoceros tenuissimus; Detection; Diatom; Enumeration; TaqMan based real time PCR

Indexed keywords

ALGAL BLOOM; DIATOM; OPTICAL INSTRUMENT; POLYMERASE CHAIN REACTION; PROBE; REAL TIME; VIRAL DISEASE;

BACILLARIOPHYTA; CHAETOCEROS;

EID: 77954439980     PISSN: 18808247     EISSN: None     Source Type: Journal    
DOI: 10.3800/pbr.5.56     Document Type: Article

References (20)

1. Bowers HA, Tengs T, Glasgow HB Jr, Burkholder JM, Rublee PA, Oldach DW (2000) Development of real-time PCR assay for rapid detection of Pfiesteria piscicida and related dinoflagellates. Appl Environ Microbiol 66: 4641-4648.
2. Chen LCM, Edelstein T, McLachlan J (1969) Bonnemaisonia hamifera Hariot in nature and in culture. J Phycol 5: 211-220.
3. Dyhrman ST, Erdner D, Du JL, Galac M, Anderson DM (2006) Molecular quantification of toxic Alexandrium fundyense in the Gulf of Maine using real-time PCR. Harmful Algae 5: 242-250.
4. Eissler Y, Wang K, Chen F, Wommack E, Coats W. (2009). Ultrastructural characterization of the lytic cycle of an intra-nuclear virus infecting the diatom Chaetoceros wighamii (Bacillario phyceae) from Chesapeake Bay, USA. J Phycol 45: 787-797.
5. Falkowski P, Scholes RJ, Boyle E, Canadell J, Canfield D, Elser J, Gruder N, Hibbard K, Hogberg P, Linder S, Mackenzie FT, Moore B, Pedersen T, Rosenthal Y, Seitzinger S, Smetacek V, Steffen W (2000) The global carbon cycle: A test of our knowledge of earth as a system. Science 290: 291-296.
6. Galluzzi L, Bertozzini E, Penna A, Perini F, Garcés E, Magnani M (2009) Analysis of rRNA gene content in the Mediterranean dinoflagellate Alexandrium catenella and Alexandrium taylori: implications for the quantitative real-time PCR-based monitoring methods. J Appl Phycol Online First DOI 10.1007/s10811- 009-9411-3.
7. Hasle GR, Syvertsen EE (1996) Marine diatoms. In: Identifying marine diatoms and dinoflagellates. (ed Tomas CR). Academic.
8. Itoh K, Imai I (1987) Raphidophyceae. In: A guide for studies of red tide organisms. (ed Japan Fisheries Resource Conservation Association). Shuwa, Tokyo, pp. 122-130. (in Japanese)
9. Kamikawa R, Asai J, Miyahara T, Murata K, Oyama K, Yoshimatsu S, Yoshida T, Sako Y (2006) Application of a real-time PCR assay to a comprehensive method of monitoring harmful algae. Microbes Environ 21: 163-173.
10. Kamikawa R, Nagai S, Hosoi-Tanabe S, Itakura S, Yamaguchi M, Uchida Y, Baba T, Sako Y (2007) Application of a real-time PCR assay for detection and quantification of Alexandrium tamarense and A. catenella cysts from marine sediments. Harmful Algae 6: 413-420.
11. McQuoid RM, Godhe A. (2004) Recruitment of coastal planktonic diatoms from benthic versus pelagic cells: Variations in bloom development and species composition. Limnol Oceanogr 49: 1123-1133.
12. Meunier A (1913) Microplankton de la mer flamande: 1. Le genre Chaetoceros Ehr. Mémoires du Musée Royal d'Histoire Naturelle de Belgique Verhandelingen van het Koninklijk Natuurhistorisch Museum van België, 7(2). Hayez: Brussel, Belgium. 55, 7 plates pp.
13. Nagasaki K (2008) Dinoflagellates, diatoms and their viruses. J Microbiol 46: 235-243.
14. Rines JEB, Hargraves PE (1988) The Chaetoceros Ehrenberg (Bacillariophyceae) flora of Narragansett Bay, Rhode Island, U.S.A. Bibliotheca Phycologica 79: 1-196.
15. Scholin CA, Herzog M, Sogin M, Anderson DM (1994) Identification of group and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae) species. II. Sequence analysis of a fragment of the large-subunit ribosomal RNA gene. J Phycol 30: 999-1011.
16. Shirai Y, Tomaru Y, Takao Y, Suzuki H, Nagumo T, Nagasaki K (2008) Isolation and characterization of a single-stranded RNA virus infecting the marine planktonic diatom Chaetoceros tenuissimus Meunier. Appl Environ Microbiol 74: 4022-4027.
17. Smetacek V (1999) Diatoms and the ocean carbon cycle. Protist 250: 25-32.
18. Sunesen I, Hernández-Becerril DU, Sar EA (2008) Marine diatoms from Buenos Aires coastal waters (Argentina). V. Species of the genus Chaetoceros. Rev Biol Mar Oceanogr 43: 303-326.
19. Tomaru Y, Takao Y, Suzuki H, Nagumo T, Nagasaki K (2009) Isolation and characterization of a single-stranded RNA virus infecting the bloom-forming diatom Chaetoceros socialis. Appl Environ Microbiol 75: 2375-2381.
20. VanLandingham SL (1968) Catalogue of the Fossil and recent Genera and Species of Diatoms and their Synonyms: Part II. Bacteriastrum through Coscinodiscus. J Cramer, Lehre, pp. i-vii, 494-1086.