Fish assemblages composition in a natural, then regulated, stream: A quantitative long-term study

Ecological Modelling

Volumn 222, Issue 13, 2011, Pages 2103-2118

  Penczak, Tadeusz ^a  

^a UNIVERSITY OF LODZ   (Poland)

Author keywords

Climate stressors; Engineering; Fish assemblages; Lowland stream; Monitoring

Indexed keywords

ANTHROPOGENIC CHANGES; ARTIFICIAL NEURAL NETWORK ALGORITHM; ASSEMBLAGE COMPOSITION; CLIMATE STRESSORS; DIVERSITY INDEX; ELECTROFISHING; FISH ASSEMBLAGES; GROWING SEASON; INDICATOR SPECIES; LOWLAND STREAM; MEANDERING STREAMS; MONITORING PROTOCOL; NATURAL STREAMS; NATURALLY OCCURRING; NUMBER OF SPECIES; OUTPUT LAYER; PAPER TESTS; SELF ORGANIZING; SIMILARITY ANALYSIS; SUB-CLUSTERS;

CLIMATE CHANGE; CONFORMAL MAPPING; LAKES; NEURAL NETWORKS;

FISH;

ALGORITHM; ANTHROPOGENIC EFFECT; ARTIFICIAL NEURAL NETWORK; BIOMASS; CANOPY; CLIMATE CHANGE; CLUSTER ANALYSIS; COMMUNITY COMPOSITION; DOMINANCE; ELECTROFISHING; ENVIRONMENTAL MONITORING; FISH; GROWING SEASON; LOWLAND ENVIRONMENT; MAGNITUDE; NUMERICAL MODEL; QUANTITATIVE ANALYSIS; RIFFLE; SELF ORGANIZATION; SOIL ORGANIC MATTER; STREAM; WEATHER;

EID: 79956285220     PISSN: 03043800     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolmodel.2011.03.032     Document Type: Article

References (85)

1. Abes S.S., Agostinho A.A. Spatial patterns in fish distributions and structure of the ichthyocenosis in the Agua Nanci stream, upper Parana River basin, Brazil. Hydrobiologia 2001, 445:217-227.
2. Allan J.D. Stream Ecology: Structure and Function of Running Waters 1995, Chapman and Hall, London.
3. Agostinho A.A., Bini L.M., Gomes L.C., Julio H.F., Agostinho C.S. Fish assemblages. The Upper Parana River and its Floodplain: Physical Aspects, Ecology and Conservation 2004, 223-246. Backhuys Publisher, Leiden, The Netherland. S.M. Thomas, A.A. Agostinho, N.S. Hahn (Eds.).
4. Balon E.K. Epigenesis of an epigeneticist: the development of some alternative concepts on the early ontogeny and evolution of fishes. Guelph Ichthyological Review 1990, 1:1-48.
5. Bannister R.C.A. North Sea plaice. Fish Population Dynamics 1977, 243-282. John Wiley and Sons, London. A. Gulland (Ed.).
6. Bedoya D., Novotny V., Manolakos E.S. Instream and offstream environmental conditions and stream biotic integrity. Importance of scale and site similarities for learning and prediction. Ecological Modelling 2009, 220:2393-2406.
7. Begon M., Mortimer M., Thompson D.J. Population Ecology. A Unified Study of Animals and Plants 1996, Blackwell Science Ltd., Oxford.
8. Brosse S., Grossman G.D., Lek S. Fish assemblage pattern in the litoral zone of a European reservoir. Freshwater Biology 2007, 52:448-458.
9. Céréghino R., Park Y.S. Review of the self-organizing map (SOM) approach in water resourses: commentary. Environmental Modelling Software 2009, 24:945-947.
10. Céréghino R., Santoul F., Compin A., Figuerola J., Mastrorillo S. Co-occurrence patterns of some small-bodied freshwater fishes in Southwestern France: implications for fish conservation and environmental management. Ambio 2005, 34:440-444.
11. Chon T.S., Park Y.S., Moon K.H., Cha E.Y. Patternizing communities by using an artificial neural network. Ecological Modelling 1996, 90:69-78.
12. Crisp, D.T., 1992. Measurement of Stream Water Temperature and Biological Applications to Salmonid fishes, Grayling and Dace. Published by Freshwater Biological Association, Occasional Publication, The Ferry House, No 29.
13. Dufrene M., Legendre P. Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecological Monographs 1997, 67:345-356.
14. Elliott, J.M., 1977. Some Methods for the Statistical Analysis of Samples of Benthic Invertebrates. Published by Freshwater Biological Association, Scientific Publication, The Ferry House, No 25.
15. Fausch K.D., Torgersen C.E., Baxter C.V., Li H.W. Landscapes to riverscapes: bridging the gap between research and conservation of stream fishes. BioScience 2002, 52:483-498.
16. Freeman M.C., Crawford M.K., Barrett D.E., Flood M.G., Hill J., Stouder D.J., Grossman G.D. Fish assemblage stability in southern Appalachian. Canadian Journal of Fishery and Aquatic Science 1988, 45:1949-1958.
17. Gido K.B.W., Matthews W.J., Wolfinbarger W.C. Long-term changes in a reservoir fish assemblage: stability in an unpredictable environment. Ecological Applications 2000, 10:1517-1529.
18. Giraudel J.L., Aurelle D., Berrebi P., Lek S. Application of the self-organizing mapping and fuzzy clustering microsatellite data: how to detect genetic structure in brown trout (Salmo trutta) populations. Artificial Neural Networks: Application to Ecology and Evolution 2000, 187-202. Springer Verlag, Berlin. S. Lek, J.F. Guegan (Eds.).
19. Głowacki Ł., Penczak T. Species richness estimators applied to fish in a small tropical river sampled by conventional methods and rotenone. Aquatic Living Resources 2005, 18:159-168.
20. Grossman G.D., Moyle P.B., Whitaker J.O. Stochasticity in structural and functional characteristics of an Indiana stream fish assemblage: a test of community theory. American Naturalist 1982, 120:423-454.
21. Grossman G.D., Ratajczak R.E., Crawford M., Freeman M.C. Assemblage organization in stream fishes: effects of environmental variation and interspecific interactions. Ecological Monographs 1998, 68:395-420.
22. Grossman G.D., Sabo J.L. Incorporating environmental variation into models of community stability: examples from stream fishes. American Fisheries Society Symposium 2010, 73:407-426.
23. Guégan J.F., Lek S., Oberdorff T. Energy availability and habitat heterogeneity predict global riverine fish diversity. Nature 1998, 391:382-384.
24. Hill J., Grossman G.G. Home range estimates for three North American stream fishes. Copeia 1987, 1987:376-380.
25. Jackson D.A., Peres-Neto P.R., Olden J.D. What controls who is where in freshwater fish communities - the role of biotic, abiotic and spatial factors. Canadian Journal of Fishery and Aquatic Science 2001, 58:157-170.
26. Kalteh A.M., Hjorth P., Berndtsson R. Review of the self-organizing map (SOM) approach in water resources: analysis, modelling and application. Environmental Modelling Software 2008, 23:835-845.
27. Kohonen T. Self-organized formation of topologically correct feature maps. Biological Cybernetic 1982, 63:201-208.
28. Kohonen T. Self-Organizing Maps 2001, Springer, Berlin. Third Extended ed.
29. Kruk A. Self-organizing maps in revealing variation in non-obligatory riverine fish in long-term data. Hydrobiologia 2006, 553:43-57.
30. Kruk A. Long-term changes in fish assemblages of the Widawka and Grabia Rivers (Poland): pattern recognition with a Kohonen artificial neural network. International Journal of Limmnology 2007, 43:253-269.
31. Kruk A., Lek S., Park Y.S., Penczak T. Fish assemblages in the large lowland Narew River system (Poland): application of the self-organizing map algorithm. Ecological Modelling 2007, 203:45-61.
32. Lasne E., Lek S., Laffaille P. Patterns in fish assemblages in the Loire floodplain: the role of hydrological connectivity, implications for, conservation. Biological Conservation 2007, 139:258-268.
33. Lek S. Fish community assemblages. Modelling Community Structure in Freshwater Ecosystems 2005, 41-42. Springer-Verlag, Berlin. S. Lek, M. Scardi, P.F.M. Verdonschot, J.P. Descy, Y.S. Park (Eds.).
34. Lek S., Guegan J.F. Artificial neural networks as a tool in ecological modelling, an introduction. Ecological Modelling 1999, 120:65-73.
35. Libosvarsky J., Wohlgemuth E. Estimates of abundance of fish in the Olsava Creek, with respect to a long winter. Zoologicke Listy 1973, 22:73-83.
36. Lohr S.C., Fausch K.D. Multiscale analysis of natural variability in stream fish assemblages of a western great plains watershed. Copeia 1997, 1997:706-724.
37. Lowe-McConnell R.H. Ecological Studies in Tropical Fish Communities 1987, Cambridge University Press, Cambridge.
38. Mann R.H.K. Fish population dynamics in the River Frome, Dorset. Regulated Rivers: Research and Management 1989, 4:165-177.
39. Matthews W.J., Cashner R.C., Gelwick F.P. Stability and persistence of fish faunas and assemblages in three Midwestern streams. Copeia 1988, 1988:945-955.
40. Matthews W.J. Patterns in Freshwater Fish Ecology 1998, Chapman and Hall, Int. Thomson Publ, New York.
41. Matthews W.J., Marsh-Matthews E. Effect of drought on fish across of space, time and ecological complexity. Freshwater Biology 2003, 48:1232-1253.
42. Matthews W.J., Marsh-Matthews E. Persistence of fish species associations in pools of a small stream of the southern great plains. Copeia 2006, 2006:696-710.
43. Mazzoni R., Lobón-Cerviá J. Longitudinal structure, density and production rates of a Neotropical stream fish assemblage: the river Ubatiba in the Serra do Mar, southeast Brazil. Ecography 2000, 23:588-602.
44. Meador M.R., McIntyre J.P., Pollock K.H. Assessing the efficacy of single-pass backpack electrofishing to characterize fish community structure. Transaction of the American Fisheries Society 2003, 132:39-46.
45. Meffe G.K., Minckley W.L. Persistence and stability of fish and invertebrate assemblages in a repeatedly disturbed Sonoran Desert stream. American Midland Naturalist 1987, 117:177-191.
46. Noori R., Karbassi A., Sabahi M.S. Evaluation of PCA and Gamma test techniques on ANN operation for weekly solid waste prediction. Journal of Environmental Management 2010, 91:767-771.
47. Oberdorff T., Hugueny B., Compin A., Belkessam D. Non-interactive fish communities on the coastal streams of North-western France. Journal of Animal Ecology 1998, 67:472-484.
48. Oberdorff T., Hugueny B., Vigneron T. Is assemblage variability related to environmental variability?. Oikos 2001, 93:419-428.
49. O'Connell M.T., Cashner R.C., Schieble C.S. Fish assemblage stability over fifty years in the Lake Pontchartrain estuary; comparisons among habitats using canonical correspondence analysis. Estuaries 2004, 27:807-817.
50. Odum E.P. Ecology 1980, Holt-Saunders, London.
51. Olden J.D., Jackson D.A. Illuminating the " black box": a randomization approach for understanding variable contributions in artificial neural network. Ecological Modelling 2002, 154:135-150.
52. Olden J.D., Jackson D.A. A comparison of statistical approaches for modeling fish apecies distribution. Freshwater Biology 2002, 47:1976-1995.
53. Park Y.S., Céréghino R., Compin A., Lek S. Application of artificial neural network for patterning and predicting aquatic insect species richness in running waters. Ecological Modelling 2003, 160:265-280.
54. Park Y.S., Tison J., Lek S., Giraudel J.L., Coste M., Delmas F. Application of a self-organizing map to select representative species in multivariate analysis: a case study determining diatom distribution patterns across France. Ecological Informatics 2006, 1:247-257.
55. Penczak T. Ecological fish production in two small lowland rivers in Poland. Oecologia 1981, 48:107-111.
56. Penczak T. Influence of site area on the estimation of the density of fish populations in a small river. Aquaculture and Fisheries Management 1985, 1:273-285.
57. Penczak T. Restricted-movement paradigm: fish displacements in a small lowland streamlet. Polish Journal of Ecology 2006, 54:145-149.
58. Penczak T. Fish assemblage compositions after implementation of the IndVal method on the Narew River system. Ecological Modelling 2009, 220:419-423.
59. Penczak T., Agostinho A.A., Gomes L.C., Latini J.D. Impacts of a reservoir on fish assemblages of small tributaries of the Corumbá River, Brazil. River Research and Applications 2009, 25:1013-1024.
60. Penczak T., Agostinho A.A., Okada E.K. Fish diversity and community structure in two small tributaries of the Paraná River, Paraná State, Brazil. Hydrobiologia 1994, 294:243-251.
61. Penczak T., Forbes I., Coles T.F., Atkin T., Hill T. Fish community structure in the rivers of Lincolnshire and South Humberside, England. Hydrobiologia 1991, 211:1-9.
62. Penczak T., Galicka W., Moliński M., Kusto E., Zalewski M. The enrichment of a mesotrophic lake by carbon, phosphorus and nitrogen from the cage aquaculture of rainbow trout, Salmo gairdneri. Journal of Applied Ecology 1982, 19:371-393.
63. Penczak T., Głowacki Ł. Evaluation of electrofishing efficiency in an initially natural and then regulated stream. Aquatic Living Resources 2008, 21:329-337.
64. Penczak T., Kruk A., Grabowska J., Śliwińska A., Koszaliński H., Zieba G., Tybulczuk S., Galicka W., Marszał L. Influence of gradual improvement in water quality on the regeneration of fish fauna in the Ner River. Scientific Annual of the Polish Angling Association 2010, 23:97-117. (In Pol. with Engl. summary).
65. Penczak T., Lek S., Godinho F., Agostinho A.A. Patterns of fish assemblages in tropical streams using SOM algorithm and conventional statistical methods. Ecohydrology and Hydrobiology 2004, 4:139-146.
66. Penczak T., Mann R.H.K. The impact of stream order on fish populations in the Pilica drainage basin, Poland. Polish Archives Hydrobiology 1990, 37:243-261.
67. Peterson J.T., Bayley P.B. Colonization rates of fish in experimentally defaunated warmwater streams. Transaction of the American Fisheries Society 1993, 122:199-207.
68. Pielou E.C. Ecological Diversity 1975, Wiley InterScience, New York.
69. Quinn G.P., Keough M.J. Experimental Design and Data Analysis for Biologists 2002, Cambridge University Press, Cambridge.
70. Reasch R.J., Berra T.M. Comparison of fish communities in a clean-water stream and an adjacent polluted stream. American Midland Naturalist 1987, 118:301-322.
71. Ricker W.E. Methods for Assessment of Fish Production in Fresh Waters. IBP Handbook No. 3 1968, Blackwell Scientific Publications, Oxford.
72. Rose K.A. Why are quantitative relationships between environmental quality and fish populations so elusive?. Ecological Applications 2000, 10:367-385.
73. Ross S.T. Resource partitioning in fish assemblages: a review of field sudies. Copeia 1986, 1986:352-388.
74. Ross S.T., Matthews W.J., Echelle A.A. Persistence of stream fish assemblages: effects of environmental change. American Naturalist 1985, 126:24-40.
75. Scheiner S.M. MANOVA: Multiple Response Variables and Multispecies Interactions 1993, 94-112. Chapman and Hall, London, New York. S.M. Scheiner, J. Gurevitch (Eds.).
76. Schlosser I.J. Fish community structure and function along two habitat gradients in a headwater stream. Ecological Monographs 1982, 52:395-414.
77. Schlosser I.J., Johnson J.D., Knotek W.L., Łapińska M. Climate variability and size-structured interactions among juvenile fish along a lake-stream gradient. Ecology 2000, 81:1046-1057.
78. Skud B.E. Dominance in fishes: the relation between environment and abundance. Science 1982, 216:144-149.
79. Southwood T.R.E. Ecological Methods 1966, Chapman and Hall, London.
80. Southwood T.R.E., Henderson P.A. Ecological Methods 2000, Blackwell Science, Oxford. 3rd ed.
81. Fish Energetics, New Perspective 1985, Croom Helm, London, Sydney. P. Tytler, P. Calow (Eds.).
82. Vesanto, J., Himberg, J., Alhoniemi, E., Parhankangas, J., 2000. SOM Toolbox for Matlab 5. Technical Report A57. Neural Networks Research Centre, Helsinki, University of Technology, Helsinki, Finland.
83. Wootton R.J. Energetics of reproduction. Fish Energetics, New Perspectives 1985, 231-254. Croom Helm, London, Sydney. P. Tytler, P. Calow (Eds.).
84. Wootton R.J., Allen J.R.M., Cole S.J. Energetics of the annual reproductive cycle in female sticklebacks, Gasterosteus aculeatus L. Journal of Fish Biology 1980, 17:387-394.
85. Zippin C. An evaluation of the removal method of estimating animal populations. Biometrics 1956, 12:163-189.