Analysis of re-integrated Ac element positions in the genome of Populus provides a basis for Ac/Ds-transposon activation tagging in trees

Trees - Structure and Function

Volumn 25, Issue 3, 2011, Pages 551-557

  Fladung, Matthias ^a  

^a Federal Research Centre for Forestry and Forest Products   (Germany)

Author keywords

Functional genomics; Poplar; Transgenic aspen; Transposition; Tree genomics

Indexed keywords

FUNCTIONAL GENOMICS; POPLAR; TRANSGENIC ASPEN; TRANSPOSITION; TREE GENOMICS;

ACTIVATION ANALYSIS; INTEGRATION; PLANT EXTRACTS; SCAFFOLDS (BIOLOGY); TISSUE;

GENES;

POPULUS; POPULUS TRICHOCARPA; ZEA MAYS;

EID: 79956109490     PISSN: 09311890     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00468-010-0511-0     Document Type: Article

References (29)

1. Busov V, Meilan R, Pearce DW, Ma C, Rood SB, Strauss SH (2003) Activation tagging of a dominant gibberellin catabolism gene (GA 2-oxidase) from poplar that regulates tree stature. Plant Physiol 132: 1283-1291.
2. Busov V, Brunner A, Meilan R, Filichkin S, Ganio L, Gandhi S, Strauss SH (2005) Genetic transformation: a powerful tool for dissection of adaptive traits in trees. New Phytol 167: 9-18.
3. Busov V, Yordanov Y, Gou J, Meilan R, Ma C, Regan S, Strauss S (2010) Activation tagging is an effective gene tagging system in Populus. Tree Genet Genomes. doi: 10. 1007/s11295-010-0317-7.
4. Cooper LD, Marquez-Cedillo L, Singh J, Sturbaum AK, Zhang S, Edwards V, Johnson K, Kleinhofs A, Rangel S, Carollo V, Bregitzer P, Lemaux PG, Hayes PM (2004) Mapping Ds insertions in barley using a sequence-based approach. Mol Genet Genomics 272: 181-193.
5. Feldmann KA (1991) T-DNA insertion mutagenesis in Arabidopsis: mutational spectrum. Plant J 1: 71-82.
6. Flachowsky H, Hanke MV, Peil A, Strauss SH, Fladung M (2009) A review on transgenic approaches to accelerate breeding of woody plants. Plant Breed 128: 217-226.
7. Fladung M (1990) Transformation of diploid and tetraploid potato clones with the rolC gene of Agrobacterium rhizogenes and characterization of transgenic plants. Plant Breed 104: 295-304.
8. Fladung M (1999) Gene stability in transgenic aspen (Populus). I. Flanking DNA sequences and T-DNA structure. Mol Gen Genet 260: 574-581.
9. Fladung M, Ahuja MR (1997) Excision of the maize transposable element Ac in periclinal chimeric leaves of 35S-Ac-rolC transgenic aspen-Populus. Plant Mol Biol 33: 1097-1103.
10. Fladung M, Kumar S, Ahuja MR (1997) Genetic transformation of Populus genotypes with different chimeric gene constructs: transformation efficiency and molecular analysis. Trans Res 6: 111-121.
11. Fladung M, Deutsch F, Hönicka H, Kumar S (2004) DNA and transposon tagging in aspen. Plant Biol 6: 5-11.
12. Fladung M, Schenk TMH, Polak O, Becker D (2010) Elimination of marker genes and targeted integration via FLP/FRT-recombination system from yeast in hybrid aspen (Populus tremula L. × P. tremuloides Michx.). Tree Genet Genomes 6: 205-217.
13. Greco R, Ouwerkerk PBF, Taal AJC, Favalli C, Beguiristain T, Puigdomènech P, Colombo L, Hoge JHC, Pereira A (2001) Early and multiple Ac transpositions in rice suitable for efficient insertional mutagenesis. Plant Mol Biol 46: 215-227.
14. Greco R, Ouwerkerk PBF, De Kam RJ, Sallaud C, Favalli C, Colombo L, Guiderdoni E, Meijer AH, Hoge JHC, Pereira A (2004) Transpositional behaviour of an Ac/Ds system for reverse genetics in rice. Theor Appl Genet 108: 10-24.
15. Harrison EJ, Bush M, Plett JM, McPhee DP, Vitez R, O'Malley B, Sharma V, Bosnich W, Seguin A, MacKay J, Regan S (2007) Diverse developmental mutants revealed in an activation tagged population of poplar. Can J Bot 85: 1071-1087.
16. Kolesnik T, Szeverenyi I, Bachmann D, Kumar CS, Jiang S, Ramamoorthy R, Cai M, Ma ZG, Sundaresan V, Ramachandran S (2004) Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences. Plant J 37: 301-314.
17. Koncz C, Martini N, Mayerhofer R, Koncz-Kalman Z, Körber H, Redei GP, Schell J (1989) High-frequency T-DNA-mediated gene tagging in plants. Proc Natl Acad Sci USA 86: 8467-8471.
18. Kumar S, Fladung M (2003) Somatic mobility of the maize element Ac and its usability for gene tagging in aspen. Plant Mol Biol 51: 643-650.
19. Martienssen RA (1998) Functional genomics: Probing plant gene function and expression with transposons. Proc Natl Acad Sci USA 95: 2021-2026.
20. McGinnis KM (2010) RNAi for functional genomics in plants. Brief Funct Genomic 9: 111-117.
21. McKenzie N, Dale PJ (2004) Mapping of transposable element Dissociation inserts in Brassica oleracea following plant regeneration from streptomycin selection of callus. Theor Appl Genet 109: 333-341.
22. Meissner R, Chague V, Zhu Q, Emmanuel E, Elkind Y, Levy AA (2000) A high throughput system for transposon tagging and promoter trapping in tomato. Plant J 22: 265-274.
23. Pakull B, Groppe K, Meyer M, Markussen T, Fladung M (2009) Genetic linkage mapping in aspen (Populus tremula L. and P. tremuloides Michx.). Tree Genet Genomes 5: 505-515.
24. Parinov S, Sevugan M, Ye D, Yang WC, Kumaran M, Sundaresan V (1999) Analysis of flanking sequences from Dissociation insertion lines: a database for reverse genetics in Arabidopsis. Plant Cell 11: 2263-2270.
25. Qu SH, Desai A, Wing R, Sundaresan V (2008) A versatile transposon-based activation tag system for functional genomics in cereals and other monocot plants. Plant Physiol 146: 189-199.
26. Raina S, Mahalingam R, Chen FQ, Fedoroff N (2002) A collection of sequenced and mapped Ds transposon insertion sites in Arabidopsis thaliana. Plant Mol Biol 50: 93-110.
27. Springer PS (2000) Gene traps: tools for plant development and genomics. Plant Cell 12: 1007-1020.
28. Suzuki Y, Uemura S, Saito Y, Murofushi N, Schmitz G, Theres K, Yamaguchi I (2001) A novel transposon tagging element for obtaining gain-of-function mutants based on a self-stabilizing Ac derivative. Plant Mol Biol 45: 123-131.
29. Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, van de Peer Y, Rokhsar D (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313: 1596-1604.