Perturbation of an arctic soil microbial community by metal nanoparticles

Journal of Hazardous Materials

Volumn 190, Issue 1-3, 2011, Pages 816-822

  Kumar, Niraj ^a   Shah, Vishal ^b   Walker, Virginia K ^a  

^a QUEEN S UNIVERSITY   (Canada)

^b DOWLING COLLEGE   (United States)

Author keywords

DGGE; Ecotoxicity; Microbial community toxicity indicator; Microbial diversity; Microcosms; Nanoparticles

Indexed keywords

DGGE; ECOTOXICITY; MICROBIAL COMMUNITIES; MICROBIAL DIVERSITY; MICROCOSMS;

AMPLIFIERS (ELECTRONIC); BIOMEDICAL ENGINEERING; ELECTRONIC EQUIPMENT MANUFACTURE; ELECTRONIC MEDICAL EQUIPMENT; ELECTROPHORESIS; ENVIRONMENTAL IMPACT; FATTY ACIDS; GENE ENCODING; MICROORGANISMS; NANOPARTICLES; OSCILLATORS (ELECTRONIC); SILICA; SILVER; SOILS; TOXICITY;

SOIL POLLUTION;

COPPER; FATTY ACID ESTER; METAL; NANOPARTICLE; SILVER;

ANTIMICROBIAL ACTIVITY; ARCTIC ENVIRONMENT; COPPER; ECOTOXICOLOGY; ENVIRONMENTAL IMPACT; MICROBIAL COMMUNITY; PHYSIOLOGICAL RESPONSE; SILICA; SILVER; SOIL MICROORGANISM; VULNERABILITY;

ANTIBACTERIAL ACTIVITY; ARCTIC; ARTICLE; BRADYRHIZOBIUM; BRADYRHIZOBIUM CANARIENSE; DENATURING GRADIENT GEL ELECTROPHORESIS; DNA DETERMINATION; DNA SEQUENCE; ENVIRONMENTAL IMPACT; MICROBIAL COMMUNITY;

ANTI-BACTERIAL AGENTS; ARCTIC REGIONS; BRADYRHIZOBIUM; ENVIRONMENTAL POLLUTANTS; METAL NANOPARTICLES; MICROBIAL CONSORTIA; SILVER; SOIL MICROBIOLOGY; TOXICITY TESTS;

BRADYRHIZOBIUM CANARIENSE;

EID: 79956073876     PISSN: 03043894     EISSN: 18733336     Source Type: Journal    
DOI: 10.1016/j.jhazmat.2011.04.005     Document Type: Article

References (38)

1. Field C.B., Lobell D.B., Peters H.A., Chiariello N.R. Feedbacks of terrestrial ecosystems to climate change. Annu. Rev. Environ. Resour. 2007, 32:1-29.
2. McGuire A.D., Anderson L.G., Christensen T.R., Dallimore S., Guo L., Hayes D.J., Heimann M., Lorenson T.D., Macdonald R.W., Roulet N. Sensitivity of the carbon cycle in the Arctic to climate change. Ecol. Monogr. 2009, 79:523-555.
3. Landers D.H., Bangay G., Sisula H., Colborn T., Liljelund L.E. Airborne contaminants in the Arctic: what we need to know. Sci. Total Environ. 1995, 160/161:841-848.
4. Davidson E.A., Janssens I.A. Temperature sensitivity of soil carbon decomposition and feedbacks to climate change. Nature 2006, 440:165-173.
5. Anand M., Ma K.-M., Okonski A., Levin S., McCreath D. Characterising biocomplexity and soil microbial dynamics along a smelter-damaged landscape gradient. Sci. Total Environ. 2003, 311:247-259.
6. Balser T.C., Firestone M.K. Linking microbial community composition and soil processes in a California annual grassland and mixed-conifer forest. Biogeochemistry 2005, 73:395-415.
7. Chapin F.S., Carpenter S.R., Kofinas G.P., Folke C., Abel N., Clark W.C., Olsson P., Smith D.M.S., Walker B., Young O.R., Birkes F., Biggs R., Grove J.M., Naylor R.L., Pinkerton E., Steffen W., Swanson F.J. Ecosystem stewardship: sustainability strategies for a rapidly changing planet. Trends Ecol. Evol. 2009, 25:241-249.
8. Simonet B.M., Valćarcel M. Monitoring nanoparticles in the environment. Anal. Bioanal. Chem. 2009, 393:17-21.
9. Tong Z., Bischoff M., Nies L., Applegate B., Turco R.F. Impact of fullerene (C60) on a soil microbial community. Environ. Sci. Technol. 2007, 41:2985-2991.
10. Johansen A., Pedersen A.L., Jensen K.A., Karlson U., Hansen B.M., Scott-Fordsmand J.J., Winding A. Effects of C60 fullerene nanoparticles on soil bacteria and protozoans. Environ. Toxicol. Chem. 2008, 27:895-1903.
11. Shah V., Belozerova I. Influence of metal nanoparticles on the soil microbial community and germination of lettuce seeds. Water Air Soil Pollut. 2008, 197:143-148.
12. Hänsch M., Emmerling C. Effects of silver nanoparticles on the microbiota and enzyme activity in soil. J. Plant Nutr. Soil Sci. 2010, 173:554-558.
13. Sondi I., Salopek-Sondi B. Silver nanoparticles as antimicrobial agent: a case study on E. coli as a model for Gram-negative bacteria. J. Colloid Interface Sci. 2004, 275:177-182.
14. Kim J.S., Kuk E., Yu K.N., Kim J.-H., Park S.J., Lee H.J., Kim S.H., Park Y.K., Park Y.H., Hwang C.-Y., Kim Y.-K., Lee Y.-S., Jeong D.H., Cho M.-H. Antimicrobial effects of silver nanoparticles. Nanomedicine 2007, 3:95-101.
15. Panáček A., Kolář M., Večeřová R., Prucek R., Soukupová J., Kryštof V., Hamal P., Zbořil R., Kvítek L. Antifungal activity of silver nanoparticles against Candida spp. Biomaterials 2009, 30:6333-6340.
16. Miao A.-J., Schwehr K.A., Xu C., Zhang S.-J., Luo Z., Quigg A., Santschi P.H. The algal toxicity of silver engineered nanoparticles and detoxification by exopolymeric substances. Environ. Pollut. 2009, 157:3034-3041.
17. Matveeva N.B., Egorova E.M., Beilina S.I., Lednev V.V. Chemotactic assay for biological effects of silver nanoparticles. Biophysics 2006, 51:758-763.
18. Buzea C., Pacheco I.I., Ivan I., Robbie K. Nanomaterials and nanoparticles: sources and toxicity. Biointerphases 2007, 2:MR17-MR71.
19. Cioffi N., Torsi L., Ditaranto N., Tantillo G., Ghibelli L., Sabbatini L., Bleve-Zacheo T., D'Alessio M., Zambonin P.G., Traversa E. Copper nanoparticle/polymer composites with antifungal and bacteriostatic properties. Chem. Mater. 2005, 17:5255-5262.
20. Liang J., Wu R., Huang T.S., Worley S.D. Polymerization of a hydantoinylsiloxane on particles of silicon dioxide to produce a biocidal sand. J. Appl. Polym. Sci. 2005, 97:1161-1166.
21. Shah V., Dobiášová P., Baldrian P., Nerud F., Kumar A., Seal S. Influence of iron and copper nanoparticle powder on the production of lignocellulose degrading enzymes in the fungus Trametes versicolor. J. Hazard. Mater. 2010, 178:1141-1145.
22. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, Tech. note # 101, MIDI, Newark, DE 1990, revised 2001.
23. Rudi K., Moen B., Dromtorp S.M., Holck A.L. Use of ethidium monoazide and PCR in combination for quantification of viable and dead cells in complex samples. Appl. Environ. Microbiol. 2005, 71:1018-1024.
24. Pisz J.M., Lawrence J.R., Schafer A.N., Siciliano S.D. Differentiation of genes extracted from non-viable versus viable micro-organisms in environmental samples using ethidium monoazide bromide. J. Microbiol. Methods 2007, 71:312-318.
25. Margulies M., Egholm M., Altman W.E., Attiya S., Bader J.S., Bemben L.A., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380.
26. Øverås L., Forney L., Daae F.L., Torsvik V. Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl. Environ. Microbiol. 1997, 63:3367-3373.
27. Lane D.J., Pace B., Olsen G.J., Stahl D.A., Sogin M.L., Pace N.R. Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc. Natl. Acad. Sci. U. S. A. 1985, 82:6955-6959.
28. Muyzer G., de Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
29. Wu Z., Qin L., Walker V.K. Characterization and recombinant expression of a divergent ice nucleation gene from 'Pseudomonas borealis'. Microbiology 2009, 155:1164-1169.
30. Derry A.M., Staddon W.J., Trevors J.T. Functional diversity and community structure of microorganisms in uncontaminated and creosote-contaminated soils as determined by sole-carbon-source-utilization. World J. Microbiol. Biotechnol. 1998, 14:571-578.
31. Goecks J., Nekrutenko A., Taylor J. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 2010, 11:R86. the Galaxy Team.
32. Blankenberg D., Gordon A., Von Custer G., Coraor N., Taylor J., Nekrutenko A. Manipulation of FASTQ data with Galaxy. Bioinformatics 2010, 26:1783-1785. the Galaxy Team.
33. Oechel W.C., Vourlitis G.L. Effects of global change on carbon storage in cold soils. Soils and Global Change 1995, 117-130. Lewis Publishers, New York. R. Lal, J. Kimble, E. Levine, B.A. Stewart (Eds.).
34. Haggstrom J.A., Klabunde K.J., Marchin G.L. Biocidaal properties of metal oxide nanoparticles and their halogen adducts. Nanoscale 2010, 2:399-405.
35. Jiang W., Mashayekhi H., Xing B. Bacterial toxicity comparison between nano- and micro-scaled oxide particles. Environ. Pollut. 2009, 157:1619-1625.
36. Vinuesa P., León-Barrios M., Silva C., Willems A., Jarabo-Lorenzo A., Pérez-Galdona R., Werner D., Martínez-Romero E. Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta. Int. J. Syst. Evol. Microbiol. 2005, 55:569-575.
37. Roh J.-Y., Sim S.J., Yi J., Park K., Chung K.H., Ryu D.-Y., Choi J. Ecotoxicity of silver nanoparticles on the soil nematode Caenorhabditis elegans using functional ecotoxicogenomics. Environ. Sci. Technol. 2009, 43:3933-3940.
38. Ping C.-L., Michaelson G.J., Jorgenson M.T., Kimble J.M., Epstein H., Romanovsky V.E., Walker D.A. High stocks of soil organic carbon in the North American Arctic region. Nat. Geosci. 2008, 1:615-619.