Activity of FEN1 endonuclease on nucleosome substrates is dependent upon DNA sequence but not flap orientation

Journal of Biological Chemistry

Volumn 286, Issue 20, 2011, Pages 17521-17529

  Jagannathan, Indu ^a   Pepenella, Sharon ^a   Hayes, Jeffrey J ^a  

^a UNIVERSITY OF ROCHESTER SCHOOL OF MEDICINE AND DENTISTRY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BASE EXCISION REPAIRS; ENDONUCLEASES; HISTONE OCTAMERS; IN-VITRO; IN-VIVO; NUCLEOSOME STRUCTURE; NUCLEOSOME SURFACE; NUCLEOSOMES; OKAZAKI FRAGMENTS; ROTATIONAL ORIENTATION; SEQUENCE-DEPENDENT; SINGLE-STRANDED DNA; XENOPUS;

ENZYMES; SUBSTRATES; ULTRAVIOLET DEVICES;

DNA;

FLAP ENDONUCLEASE; FLAP ENDONUCLEASE 1; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; DNA SEQUENCE; ENZYME ACTIVITY; ENZYME RECONSTITUTION; IN VITRO STUDY; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CLEAVAGE; PROTEIN DENATURATION; PROTEIN STRUCTURE; XENOPUS;

ANIMALS; DNA; FLAP ENDONUCLEASES; HUMANS; NUCLEOSOMES; SUBSTRATE SPECIFICITY; XENOPUS;

EID: 79955978866     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.229658     Document Type: Article

References (37)

1. Henricksen, L. A., and Bambara, R. A. (1998) Leuk. Res. 22, 1-5
2. Liu, Y., Kao, H. I., and Bambara, R. A. (2004) Annu. Rev. Biochem. 73, 589-615
3. Qiu, J., Qian, Y., Chen, V., Guan, M. X., and Shen, B. (1999) J. Biol. Chem. 274, 17893-17900
4. Larsen, E., Gran, C., Saether, B. E., Seeberg, E., and Klungland, A. (2003) Mol. Cell. Biol. 23, 5346-5353
5. Matsuzaki, Y., Adachi, N., and Koyama, H. (2002) Nucleic Acids Res. 30, 3273-3277
6. Kucherlapati, M., Yang, K., Kuraguchi, M., Zhao, J., Lia, M., Heyer, J., Kane, M. F., Fan, K., Russell, R., Brown, A. M., Kneitz, B., Edelmann, W., Kolodner, R. D., Lipkin, M., and Kucherlapati, R. (2002) Proc. Natl. Acad. Sci. U.S.A. 99, 9924-9929
7. Hosfield, D. J., Mol, C. D., Shen, B., and Tainer, J. A. (1998) Cell 95, 135-146
8. Murante, R. S., Rust, L., and Bambara, R. A. (1995) J. Biol. Chem. 270, 30377-30383
9. Robins, P., Pappin, D. J., Wood, R. D., and Lindahl, T. (1994) J. Biol. Chem. 269, 28535-28538
10. Kao, H. I., Henricksen, L. A., Liu, Y., and Bambara, R. A. (2002) J. Biol. Chem. 277, 14379-14389
11. Bornarth, C. J., Ranalli, T. A., Henricksen, L. A., Wahl, A. F., and Bambara, R. A. (1999) Biochemistry 38, 13347-13354
12. Cusick, M. E., Lee, K. S., DePamphilis, M. L., and Wassarman, P. M. (1983) Biochemistry 22, 3873-3884
13. Gong, F., Fahy, D., Liu, H., Wang, W., and Smerdon, M. J. (2008) Cell Cycle 7, 1067-1074
14. Gong, F., Fahy, D., and Smerdon, M. J. (2006) Nat. Struct. Mol. Biol. 13, 902-907
15. Peterson, C. L., and Côté, J. (2004) Genes Dev. 18, 602-616
16. Prasad, A., Wallace, S. S., and Pederson, D. S. (2007) Mol. Cell. Biol. 27, 8442-8453
17. Ishibashi, T., So, K., Cupples, C. G., and Ausio, J. (2008) Mol. Cell. Biol. 28, 4734-4744
18. Nilsen, H., Lindahl, T., and Verreault, A. (2002) EMBO J. 21, 5943-5952
19. Beard, B. C., Wilson, S. H., and Smerdon, M. J. (2003) Proc. Natl. Acad. Sci. U.S.A. 100, 7465-7470
20. Beard, B. C., Stevenson, J. J., Wilson, S. H., and Smerdon, M. J. (2005)DNA Repair 4, 203-209
21. Cole, H. A., Tabor-Godwin, J. M., and Hayes, J. J. (2010) J. Biol. Chem. 285, 2876-2885
22. Chafin, D. R., Vitolo, J. M., Henricksen, L. A., Bambara, R. A., and Hayes, J. J. (2000) EMBO J. 19, 5492-5501
23. Huggins, C. F., Chafin, D. R., Aoyagi, S., Henricksen, L. A., Bambara, R. A., and Hayes, J. J. (2002) Mol. Cell 10, 1201-1211
24. Lowary, P. T., and Widom, J. (1998) J. Mol. Biol. 276, 19-42
25. Yang, Z., Zheng, C., and Hayes, J. J. (2007) J. Biol. Chem. 282, 7930-7938
26. Rhodes, D. (1985) EMBO J. 4, 3473-3482
27. Thiriet, C., and Hayes, J. J. (1998) J. Biol. Chem. 273, 21352-21358
28. Hayes, J. J., Tullius, T. D., and Wolffe, A. P. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 7405-7409
29. Aoyagi, S., Wade, P. A., and Hayes, J. J. (2003) J. Biol. Chem. 278, 30562-30568
30. Aoyagi, S., Narlikar, G., Zheng, C., Sif, S., Kingston, R. E., and Hayes, J. J. (2002) Mol. Cell. Biol. 22, 3653-3662
31. Kassabov, S. R., Henry, N. M., Zofall, M., Tsukiyama, T., and Bartholomew, B. (2002) Mol. Cell. Biol. 22, 7524-7534
32. Edayathumangalam, R. S., Weyermann, P., Dervan, P. B., Gottesfeld, J. M., and Luger, K. (2005) J. Mol. Biol. 345, 103-114
33. Polach, K. J., and Widom, J. (1995) J. Mol. Biol. 254, 130-149
34. Suto, R. K., Edayathumangalam, R. S., White, C. L., Melander, C., Gottesfeld, J. M., Dervan, P. B., and Luger, K. (2003) J. Mol. Biol. 326, 371-380
35. Ong, M. S., Richmond, T. J., and Davey, C. A. (2007) J. Mol. Biol. 368, 1067-1074
36. Kulaeva, O. I., Gaykalova, D. A., Pestov, N. A., Golovastov, V. V., Vassylyev, D. G., Artsimovitch, I., and Studitsky, V. M. (2009) Nat. Struct. Mol. Biol. 16, 1272-1278
37. Lowary, P. T., and Widom, J. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 1183-1188