Thrombin-binding aptamer quadruplex formation: AFM and voltammetric characterization

Journal of Nucleic Acids

Volumn 2010, Issue , 2010, Pages

  Diculescu, Victor Constantin ^a   Chiorcea Paquim, Ana Maria ^a   Eritja, Ramon ^b   Oliveira Brett, Ana Maria ^a  

^a UNIVERSITY OF COIMBRA   (Portugal)

^b BIOMATERIALES Y NANOMEDICINA CIBER BBN   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; GRAPHITE; GUANINE; GUANINE QUADRUPLEX; PEPTIDE APTAMER; POTASSIUM ION; THROMBIN BINDING APTAMER; UNCLASSIFIED DRUG;

ADSORPTION; ARTICLE; ATOMIC FORCE MICROSCOPY; COMPLEX FORMATION; CONTROLLED STUDY; DNA BASE COMPOSITION; ELECTRODE; ELECTRON TRANSPORT; MOLECULAR STABILITY; OXIDATION; OXIDATION REDUCTION STATE; POTENTIOMETRY; PRIORITY JOURNAL; PYROLYSIS;

EID: 79955895959     PISSN: 20900201     EISSN: 2090021X     Source Type: Journal    
DOI: 10.4061/2010/841932     Document Type: Article

References (17)

1. Dapić V., Abdomerović V., Marrington R., Biophysical and biological properties of quadruplex oligodeoxyribonucleotides. Nucleic Acids Research 2003 31 8 2097 2107 2-s2.0-0038476179 10.1093/nar/gkg316 (Pubitemid 37442077)
2. Oganesian L., Bryan T. M., Physiological relevance of telomeric G-quadruplex formation: a potential drug target. BioEssays 2007 29 2 155 165 2-s2.0-33847372902 10.1002/bies.20523 (Pubitemid 46340250)
3. Cogoi S., Xodo L. E., G-quadruplex formation within the promoter of the KRAS proto-oncogene and its effect on transcription. Nucleic Acids Research 2006 34 9 2536 2549 2-s2.0-33744472232 10.1093/nar/gkl286 (Pubitemid 43985618)
4. Macaya R. F., Schultze P., Smith F. W., Roe J. A., Feigon J., Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution. Proceedings of the National Academy of Sciences of the United States of America 1993 90 8 3745 3749 2-s2.0-0027467617 (Pubitemid 23111444)
5. Ellington A. D., Szostak J. W., In vitro selection of RNA molecules that bind specific ligands. Nature 1990 346 6287 818 822 2-s2.0-0025074907 10.1038/346818a0 (Pubitemid 20272100)
6. Beissenhirtz M. K., Willner I., DNA-based machines. Organic and Biomolecular Chemistry 2006 4 18 3392 3401 2-s2.0-33748270872 10.1039/b607033g (Pubitemid 44319623)
7. del Toro M., Gargallo R., Eritja R., Jaumot J., Study of the interaction between the G-quadruplex-forming thrombin-binding aptamer and the porphyrin 5,10,15,20-tetrakis-(N-methyl-4-pyridyl)-21,23H-porphyrin tetratosylate. Analytical Biochemistry 2008 379 1 8 15 2-s2.0-46549084379 10.1016/j.ab.2008.04. 044
8. Tang Z., Shangguan D., Wang K., Selection of aptamers for molecular recognition and characterization of cancer cells. Analytical Chemistry 2007 79 13 4900 4907 2-s2.0-34447316180 10.1021/ac070189y (Pubitemid 47051443)
9. Chakraborty B., Jiang Z., Li Y., Yu H.-Z., hoganyu@sfu.ca Rational design and performance testing of aptamer-based electrochemical biosensors for adenosine. Journal of Electroanalytical Chemistry 2009 635 2 75 82 2-s2.0-33947221477 10.1016/j.jelechem.2009.08.006
10. Torres-Chavolla E., Alocilja E. C., alocilja@msu.edu Aptasensors for detection of microbial and viral pathogens. Biosensors and Bioelectronics 2009 24 11 3175 3182 2-s2.0-17644375117 10.1016/j.bios.2008.11.010
11. Numnuam A., Chumbimuni-Torres K. Y., Xiang Y., Aptamer-based potentiometric measurements of proteins using ion-selective microelectrodes. Analytical Chemistry 2008 80 3 707 712 2-s2.0-38849154546 10.1021/ac701910r (Pubitemid 351206858)
12. Wang C., Zhang M., Yang G., Single-stranded DNA aptamers that bind differentiated but not parental cells: subtractive systematic evolution of ligands by exponential enrichment. Journal of Biotechnology 2003 102 1 15 22 2-s2.0-0037430933 10.1016/S0168-1656(02)00360-7 (Pubitemid 36369199)
13. Morris K. N., Jensen K. B., Julin C. M., Weil M., Gold L., High affinity ligands from in vitro selection: complex targets. Proceedings of the National Academy of Sciences of the United States of America 1998 95 6 2902 2907 2-s2.0-0032539924 10.1073/pnas.95.6.2902 (Pubitemid 28135827)
14. Kelly J. A., Feigon J., Yeates T. O., Reconciliation of the X-ray and NMR structures of the thrombin-binding aptamer d(GGTTGGTGTGGTTGG). Journal of Molecular Biology 1996 256 3 417 422 2-s2.0-0029980523 10.1006/jmbi.1996.0097 (Pubitemid 26107194)
15. Chiorcea Paquim A.-M., Oretskaya T. S., Oliveira Brett A. M., Adsorption of synthetic homo- and hetero-oligodeoxynucleotides onto highly oriented pyrolytic graphite: atomic force microscopy characterization. Biophysical Chemistry 2006 121 2 131 141 2-s2.0-33746573968 10.1016/j.bpc.2005.12.017 (Pubitemid 44275194)
16. Marsh T. C., Vesenka J., Henderson E., A new DNA nanostructure, the G-wire, imaged by scanning probe microscopy. Nucleic Acids Research 1995 23 4 696 700 2-s2.0-0028964016
17. Oliveira Brett A. M., Diculescu V. C., Chiorcea-Paquim A. M., Serrano S. H. P., Chapter 20 DNA-electrochemical biosensors for investigating DNA damage. Comprehensive Analytical Chemistry 2007 49 413 437 2-s2.0-0029111530 10.1016/S0166-526X(06)49020-6