A dynamic bead-based microarray for parallel DNA detection

Journal of Micromechanics and Microengineering

Volumn 21, Issue 5, 2011, Pages

  Sochol, R D ^a   Casavant, B P ^b   Dueck, M E ^b   Lee, L P ^b   Lin, L ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b University of California at Berkeley   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL APPLICATIONS; CROSS SECTIONAL AREA; DNA OLIGONUCLEOTIDES; DRUG SCREENING; HEPATITIS C; MEDICAL DIAGNOSTICS; MICRO FLUIDIC SYSTEM; MICROBEADS; MICROFLUIDIC MIXING; MICROFLUIDIC PLATFORMS; MICROMACHINING PROCESS; MOLECULAR BEACON; PARALLEL DETECTION; PARALLEL REACTION CHAMBERS; PARALLEL-DNA; PARALLELIZATIONS; PROTOTYPE SYSTEM; QUANTITATIVE DETECTION; SINGLE CHIPS;

DNA; DNA SEQUENCES; MICROMACHINING; OLIGONUCLEOTIDES; POLYSTYRENES;

MICROFLUIDICS;

EID: 79955843076     PISSN: 09601317     EISSN: 13616439     Source Type: Journal    
DOI: 10.1088/0960-1317/21/5/054019     Document Type: Article

References (30)

1. Syvanen A C 2001 Accessing genetic variation: genotyping single nucleotide polymorphisms Nature Rev. Genet. 2 930-42
2. Verpoorte E 2003 Beads and chips: new recipes for analysis Lab Chip 3 60N-68N
3. Dittrich P S and Manz A 2006 Lab-on-a-chip: microfluidics in drug discovery Nature Rev. Drug Discovery 5 210-8 (Pubitemid 43336034)
4. Tan W H and Takeuchi S 2007 A trap-and-release integrated microfluidic system for dynamic microarray applications Proc. Natl Acad. Sci. USA 104 1146-51 (Pubitemid 46183973)
5. Lim C T and Zhang Y 2007 Bead-based microfluidic immunoassays: the next generation Biosens. Bioelectron. 22 1197-204 (Pubitemid 46157004)
6. Nilsson J, Evander M, Hammarstrom B and Laurell T 2009 Review of cell and particle trapping in microfluidic systems Anal. Chim. Acta 649 141-57
7. Horejsh D, Martini F, Poccia F, Ippolito G, Di Caro A and Capobianchi M R 2005 A molecular beacon, bead-based assay for the detection of nucleic acids by flow cytometry Nucleic Acids Res. 33 e13
8. Ng J K K and Liu W T 2006 Miniaturized platforms for the detection of single-nucleotide polymorphisms Anal. Bioanal. Chem. 386 427-34
9. Du J Y et al 2009 Bead-based profiling of tyrosine kinase phosphorylation identifies src as a potential target for glioblastoma therapy Nature Biotechnol. 27 77-83
10. Dunbar S A 2006 Applications of luminex (r) xmap (tm) technology for rapid, high-throughput multiplexed nucleic acid detection Clin. Chim. Acta 363 71-82 (Pubitemid 41745226)
11. Ali M F et al 2003 DNA hybridization and discrimination of single-nucleotide mismatches using chip-based microbead arrays Anal. Chem. 75 4732-9 (Pubitemid 37139772)
12. Hashmi G et al 2005 A flexible array format for large-scale, rapid blood group DNA typing Transfusion 45 680-8 (Pubitemid 40656378)
13. Ng J K, Feng H H and Liu W T 2007 Rapid discrimination of single-nucleotide mismatches using a microfluidic device with monolayered beads Anal. Chim. Acta 582 295-303 (Pubitemid 46001373)
14. Qiu X B et al 2009 Finger-actuated, self-contained immunoassay cassettes Biomed. Microdevices 11 1175-86
15. Steemers F J and Gunderson K L 2007 Whole genome genotyping technologies on the BeadArray (TM) platform Biotechnol. J. 2 41-9 (Pubitemid 46738887)
16. Thompson J A and Bau H H 2010 Microfluidic, bead-based assay: theory and experiments J. Chromatogr. B-Anal. Technol. Biomed. Life Sci. 878 228-36
17. Thompson J A, Du X G, Grogan J M, Schrlau M G and Bau H H 2010 Polymeric microbead arrays for microfluidic applications J. Micromech. Microeng. 20 115017
18. Hur S C, Tse H T K and Di Carlo D 2010 Sheathless inertial cell ordering for extreme throughput flow cytometry Lab Chip 10 274-80
19. Kim D N, Lee Y and Koh W G 2009 Fabrication of microfluidic devices incorporating bead-based reaction and microarray-based detection system for enzymatic assay Sensors Actuators B 137 305-12
20. Nagai H, Narita Y, Ohtaki M, Saito K and Wakida S I 2007 Single-bead analysis on a disk-shaped microfluidic device using an antigen-immobilized bead Anal. Sci. 23 975-9
21. Tuleuova N, Jones C N, Yan J, Ramanculov E, Yokobayashi Y and Revzin A 2010 Development of an aptamer beacon for detection of interferon-gamma Anal. Chem. 82 1851-7
22. Hsieh A T H, Pan P J H and Lee A P 2009 Rapid label-free DNA analysis in picoliter microfluidic droplets using fret probes Microfluid. Nanofluid. 6 391-401
23. Strohsahl C M, Miller B L and Krauss T D 2007 Preparation and use of metal surface-immobilized DNA hairpins for the detection of oligonucleotides Nat. Protoc. 2 2105-10 (Pubitemid 351565847)
24. Kim S et al 2007 Rapid DNA hybridization analysis using a PDMS microfluidic sensor and a molecular beacon Anal. Sci. 23 401-5
25. Jung J et al 2007 Fast and sensitive DNA analysis using changes in the FRET signals of molecular beacons in a PDMS microfluidic channel Anal. Bioanal. Chem. 387 2609-15 (Pubitemid 46479921)
26. Tan L et al 2005 Molecular beacons for bioanalytical applications Analyst 130 1002-5 (Pubitemid 40980111)
27. Yang J H, Lai J P, Douglas S D, Metzger D, Zhu X H and Ho W Z 2002 Real-time RT-PCR for quantitation of hepatitis C virus RNA J. Virol. Methods 102 119-28 (Pubitemid 34185477)
28. Zuo X B, Yang X H, Wang K M, Tan W H and Wen J H 2007 A novel sandwich assay with molecular beacon as report probe for nucleic acids detection on one-dimensional microfluidic beads array Anal. Chim. Acta 587 9-13
29. Ng J K, Selamat E S and Liu W T 2008 A spatially addressable bead-based biosensor for simple and rapid DNA detection Biosens. Bioelectron. 23 803-10 (Pubitemid 350296937)
30. Nkodo A E et al 2001 Diffusion coefficient of DNA molecules during free solution electrophoresis Electrophoresis 22 2424-32 (Pubitemid 32725549)