Streptomyces tacrolimicus sp.nov., a low producer of the immunosuppressant tacrolimus (FK506)

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 5, 2011, Pages 1084-1088

  Martínez Castro, Miriam ^a   Barreiro, Carlos ^b   Romero, Francisco ^c   Fernández Chimeno, Rosa Isabel ^c   Martín, Juan F ^a,b  

^a UNIVERSITY OF LEÓN   (Spain)

^b Institute of Biotechnology INBIOTEC Parque Científico de León   (Spain)

^c Instituto Biomar SA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; TACROLIMUS;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENOTYPE; GENUS; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STREPTOMYCES; STREPTOMYCES FLAVOFUNGINI; STREPTOMYCES FULVISSIMUS; STREPTOMYCES TACROLIMICUS; TAXONOMY;

DNA, BACTERIAL; IMMUNOSUPPRESSIVE AGENTS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; STREPTOMYCES; TACROLIMUS;

STREPTOMYCES;

EID: 79955833454     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.024273-0     Document Type: Article

References (36)

1. Becker, B., Lechevalier, M. P., Gordon, R. E. & Lechevalier, H. A.(1964). Rapid differentiation betweennocardia and Streptomyces by paper chromatography of whole-cell hydrolysates. Appl Microbiol 12, 421-423.
2. Bentley, S. D., Chater, K. F., Cerdeň o-Tárraga, A. M., Challis, G. L., Thomson,n. R., James, K. D., Harris, D. E., Quail, M. A., Kieser, H. & other authors (2002). Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).nature 417, 141-147.
3. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
4. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
5. Dumont, F., Garrity, G. M., Fernandez, I. M. & Matas, T. D. (1992). Process for producing FK506. United States patentno. 5,116,756.
6. Euzé by, J. P. (1997). List of bacterialnames with standing innomenclature: a folder available on the Internet. Int J Syst Bacteriol 47, 590-592.
7. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Felsenstein, J. (2005). PHYLIP (phylogeny inference package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle.
10. Garrity, G. M., Heimbuch, B. K., Motamedi, H. & Shafiee, A. (1993). Genetic relationships among actinomycetes that produce the immunosuppressant macrolides FK506, FK520/FK523 and rapamycin. J Ind Microbiol 12, 42-47.
11. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
12. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
13. Ikeda, H., Ishikawa, J., Hanamoto, A., Shinose, M., Kikuchi, H., Shiba, T., Sakaki, Y., Hattori, M. & Omura, S. (2003). Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.nat Biotechnol 21, 526-531.
14. Jones, K. L. (1949). Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57, 141-145.
15. Kelly, K. L. (1964). Inter-Society Color Council -national Bureau of Standards Colorname Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
16. Kieser, T., Bibb, M. J., Buttner, M. J., Chater, K. F. & Hopwood, D. A. (2000). Practical Streptomyces Genetics.norwich: John Innes Foundation.
17. Kim, H. S. & Park, Y. I. (2008). Isolation and identification of anovel microorganism producing the immunosuppressant tacrolimus. J Biosci Bioeng 105, 418-421.
18. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies ofnucleotide sequences. J Mol Evol 16, 111-120.
19. Kino, T., Hatanaka, H., Hashimoto, M.,nishiyama, M., Goto, T., Okuhara, M., Kohsaka, M., Aoki, H. & Imanaka, H. (1987). FK-506, anovel immunosuppressant isolated from a Streptomyces. I. Fermentation, isolation, and physico-chemical and biological characteristics. J Antibiot (Tokyo) 40, 1249-1255.
20. Langham, C. D., Williams, S. T., Sneath, P. H. A. & Mortimer, A. M. (1989).new probability matrices for identification of Streptomyces. J Gen Microbiol 135, 121-133.
21. Lechevalier, M. P. & Lechevalier, H. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
22. Locci, R. (1989). Streptomyces and related genera. In Bergey's Manual of Systematic Bacteriology, vol. 4, pp. 2451-2508 Edited by S. T. Williams, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
23. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids. J Clin Microbiol 16, 584-586.
24. Miller, L. & Berger, T. (1985). Bacteria identification by gas chromatography of whole cell fatty acids, Hewlett-Packard applicationnote 228-241. Avondale, PA: Hewlett-Packard.
25. Muramatsu, H., Mokhtar, S., Katsuoka, M. & Ezaki, M. (2005). Phylogenetic analysis of immunosuppressant FK506-producing streptomycete strains. Actinomycetologica 19, 33-39.
26. Ohnishi, Y., Ishikawa, J., Hara, H., Suzuki, H., Ikenoya, M., Ikeda, H., Yamashita, A., Hattori, M. & Horinouchi, S. (2008). Genome sequence of the streptomycin-producing microorganism Streptomyces griseus IFO 13350. J Bacteriol 190, 4050-4060.
27. Saitou,N. &nei, M. (1987). Theneighbor-joining method: anew method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
28. Shafiee, A., Motamedi, H. & Chen, T. (1994). Enzymology of FK-506 biosynthesis. Purification and characterization of 31-O-desmethylFK- 506 O: methyltransferase from Streptomyces sp. MA6858. Eur J Biochem 225, 755-764.
29. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
30. Sigmund, J. M., Clark, D. C., Rainey, F. A. & Anderson, A. S. (2003). Detection of eubacterial 3-hydroxy-3-methylglutaryl coenzyme a reductases fromnatural populations of actinomycetes. Microb Ecol 46, 106-112.
31. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
32. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
33. Tamura, K., Dudley, J.,nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
34. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.nucleic Acids Res 22, 4673-4680.
35. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Bacterial Systematics. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
36. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M., Sneath, P. H. & Sackin, M. J. (1983).numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.