Mould and yeast identification in archival settings: Preliminary results on the use of traditional methods and molecular biology options in Portuguese archives

International Biodeterioration and Biodegradation

Volumn 65, Issue 4, 2011, Pages 619-627

  Pinheiro, A C ^a   Macedo, M F ^a   Jurado, V ^b   Saiz Jimenez, C ^b   Viegas, C ^c   Brandao J ^d   Rosado, L ^d  

^a UNIVERSIDADE NOVA DE LISBOA   (Portugal)

^b INSTITUTO DE RECURSOS NATURALES Y AGROBIOLOGÍA DE SEVILLA   (Spain)

^c INSTITUTO POLITÉCNICO DE LISBOA   (Portugal)

^d NATIONAL INSTITUTE OF HEALTH DR RICARDO JORGE   (Portugal)

Author keywords

Archives; DHPLC; Fungi; Paper documents

Indexed keywords

ARCHIVE MATERIALS; ARCHIVES; ASPERGILLUS FUMIGATUS; ASPERGILLUS NIGER; BACTERIAL COMMUNITY; BIOLOGICAL CONTAMINANTS; CLASSICAL METHODOLOGIES; COMPLEX MIXTURE; CULTURE MEDIA; DENATURING GRADIENT GEL ELECTROPHORESIS; DHPLC; ENVIRONMENTAL ANALYSIS; ENVIRONMENTAL CONDITIONS; FRACTION COLLECTION; FRAGMENT LENGTHS; FUNGAL COLONIZATION; FUSARIUM SP; GENETIC VARIATION; HUMAN HEALTH; INDOOR AIR QUALITY; NON-VIABLE; PAPER DOCUMENTS; SAMPLE ANALYSIS;

AIR QUALITY; ASPERGILLUS; CLONING; ELECTROPHORESIS; GENES; INDOOR AIR POLLUTION; LIQUID CHROMATOGRAPHY; MOLECULAR BIOLOGY; YEAST;

MOLECULAR STRUCTURE;

AIR QUALITY; BACTERIUM; COLONIZATION; FUNGUS; GENETIC VARIATION; IDENTIFICATION METHOD; INDOOR AIR; LIQUID CHROMATOGRAPHY; MICROBIAL COMMUNITY; MOLECULAR ANALYSIS; PATHOGEN; PRESERVATION; PUBLIC HEALTH;

PORTUGAL;

ASPERGILLUS FUMIGATUS; ASPERGILLUS NIGER; BACTERIA (MICROORGANISMS); CANDIDA; FUNGI; FUSARIUM; FUSARIUM SP.; STACHYBOTRYS;

EID: 79955789480     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2011.02.008     Document Type: Article

References (32)

1. Abliz P., Fukushima K., Takizawa K., Nishimura K. Identification of pathogenic dematiceous fungi and related taxa based on large subunit ribosomal D1/D2 domain sequence analysis. FEMS Immunology and Medical Microbiology 2004, 40:41-49.
2. Handbook of Applied Mycology: Foods and Feeds 1991, Vol. 3. Marcel Dekker Inc, New York. D. Arora, K. Mukerji, M. Helmer (Eds.).
3. Barlaan E.A., Sugimori M., Furukawa S., Takeuchi K. Profiling and monitoring of microbial populations by denaturing high-performance liquid chromatography. Journal of Microbiological Methods 2005, 61:399-412.
4. Buttner M.P., Stetzenbach L.D. Monitoring airborne fungal spores in an experimental indoor environment to evaluate sampling methods and the effects of human activity on air sampling. Applied and Environmental Microbiology 1993, 59:219-226.
5. Cano J., Guarro J., Gené J. Molecular and morphological identification of Colletotrichum species of clinical interest. Journal of Clinical Microbiology 2004, 42:2450-2454.
6. Corte A.M., Ferroni A., Salvo V.S. Isolation of fungal species from test samples and maps damaged by foxing, and correlation between these species and the environment. International Biodeterioration & Biodegradation 2003, 51:167-173.
7. De Baere T., Claeys G., Swinne D., Massonet C., Verschraegen G., Muylaert A., Vaneechoutte M. Identification of cultured isolates of clinically important yeast species using fluorescent fragment length analysis of the amplified internally transcribed rRNA spacer 2 region. BMC Microbiology 2002, 2:21.
8. Domann E., Hong G., Imirzalioglu C., Turschner S., Kuhle J., Watzel C., Hain T., Hossein H., Chakraborty T. Culture-independent identification of pathogenic bacteria and polymicrobial infections in the genitourinary tract of renal transplant recipients. Journal of Clinical Microbiology 2003, 41:5500-5510.
9. Duchaine C., Mériaux A. The importance of combining air sampling and surface analysis when studying problematic houses for mold biodiversity determination. Aerobiologia 2001, 17:121-125.
10. Fujita S.I., Senda Y., Nakaguchi S., Hashimoto T. Multiplex PCR using internal transcribed spacer 1 and 2 regions for rapid detection and identification of yeast strains. Journal of Clinical Microbiology 2001, 39:3617-3622.
11. Gafan G.P., Spratt D.A. Denaturing gradient gel electrophoresis gel expansion (DGGEGE)-an attempt to resolve the limitations of co-migration in the DGGE of complex polymicrobial communities. FEMS Microbiology Letters 2005, 253:303-307.
12. Gelsomino A., Keijzer-Wolters A.C., Cacco G., van Elsas J.D. Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. Journal of Microbiological Methods 1999, 38:1-15.
13. Goldenberg O., Herrmann S., Adam T., Marjoram G., Hong G., Gobël U.B., Graf B. Use of denaturing high-performance liquid chromatography for rapid detection of seven Candida species. Journal of Clinical Microbiology 2005, 43:5912-5915.
14. Goldenberg O., Herrmann S., Marjoram G., Noyer-Weidner M., Hong G., Bereswill S., Göbel U. Molecular monitoring of the intestinal flora by denaturing high performance liquid chromatography. Journal of Microbiological Methods 2007, 68:94-105.
15. Hinrikson H., Hurst S.F., Lott T.J., Warnock D.W., Morrison C.J. Assessment of ribosomal large-subunit D1-D, internal transcribed spacer 1, and internal transcribed spacer 2 regions as targets for molecular identification of medically important Aspergillus species. Journal of Clinical Microbiology 2005, 43:2092-2103.
16. Janse I., Bok J., Zwart G. A simple remedy against artifactual double bands in denaturing gradient gel electrophoresis. Journal of Microbiological Methods 2004, 57:279-281.
17. Kemp P.C., Neumeister-Kemp H.G., Esposito B. Changes in airborne fungi from the outdoors to indoor air: large HVAC systems in nonproblem buildings in two different climates. American Industrial Hygiene Association Journal 2003, 64:269-275.
18. Larone D.H. Medically important fungi: A guide to identification 2002, American Society for Microbiology, Washington. fourth ed.
19. Leaw S.N., Chang H.C., Sun H.F., Barton R., Bouchara J.P., Chang T.C. Identification of medically important yeast species by sequence analysis of the internal transcribed spacer regions. Journal of Clinical Microbiology 2006, 44:693-699.
20. Mandrioli P., Caneva G. Aerobiologia e beni culturali; associazione Italiana di aerobiologia - Consiglio nazionale delle richerche 1998, Nardini Editore, Firenze.
21. Maggi O., Persiani A.M., Gallo F., Valenti P., Pasquariello G., Sclocchi M.C., Scorrano M. Airborne fungal spores in dust present in archives: proposal for a detection method, new for archival materials. Aerobiologia 2000, 16:429-434.
22. Muyzer G., Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 1998, 73:127-141.
23. Nikolausz M., Sipos R., Revesz S., Szekely A., Marialigeti K. Observation of bias associated with re-amplification of DNA isolated from denaturing gradient gels. FEMS Microbiology Letters 2005, 244:385-390.
24. Ninet B., Jan I., Bontems O., Léchenne B., Jousson O., Panizzon R., Lew D., Monod M. Identification of dermatophyte species by 28S ribossomal DNA sequencing with a commercial kit. Journal of Clinical Microbiology 2003, 41:826-830.
25. Nota Técnica NT-SCE-02, 2009. Metodologia para auditorias periódicas de QAI em edifícios existentes no Âmbito do RSECE. http://www.apambiente.pt/politicasambiente/Ar/QualidadeArInterior/AuditoriasRequisitosQAI/Documents/NT_SCE_Abril_2009.pdf.
26. Rossman A. Report of the planning workshop for all fungi DNA barcoding. Inoculum 2007, 58:1-5.
27. Salvaggio J., Aukrust L. Mould induced asthma. Journal of Allergy and Clinical Immunology 1981, 68:327-346.
28. Samson R.A., Hoekstra E.S., Frisvad J.C. Introduction to food- and airborne fungi 2004, Centraalbureau voor Schimmelcultures, Utrecht. seventh ed.
29. Turenne C.Y., Sanche S.E., Hoban D.J., Karlowski J.A., Kabani A.M. Rapid identification of fungi by using the ITS2 genetic region and an automated fluorescent capillary electrophoresis system. Journal of Clinical Microbiology 1999, 37:1846-1851.
30. White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribossomal RNA genes for phylogenetics. PCR protocols: A guide to methods and applications 1990, Academic Press, San Diego. M.A. Innis, D.H. Gelfand, J.J. Sninsky, T.J. White (Eds.).
31. Wlazlo A., Lawniczek A., Ludzen-Izbinska B., Harkawy A., Anczyk E., Gorny R.L. Exposure to bioaerosols at libraries. Indoor Air 2008, 17-22 August 2008, Copenhagen, Denmark, Paper ID:499.
32. Zyska B. Fungi isolated from library materials: a review of the literature. International Biodeterioration & Biodegradation 1997, 40:43-51.