Identification of pathogenic dematiaceous fungi and related taxa based on large subunit ribosomal DNA D1/D2 domain sequence analysis

FEMS Immunology and Medical Microbiology

Volumn 40, Issue 1, 2004, Pages 41-49

  Abliz, Paride ^a   Fukushima, Kazutaka ^a   Takizawa, Kayoko ^a   Nishimura, Kazuko ^a  

^a CHIBA UNIVERSITY   (Japan)

Author keywords

D1 D2 domains; Identification; Large subunit ribosomal DNA; Pathogenic dematiaceous fungus

Indexed keywords

RIBOSOME DNA;

ARTICLE; CLADOPHIALOPHORA BANTIANA; CLADOPHIALOPHORA CARRIONII; CONTROLLED STUDY; DNA SEQUENCE; EXOPHIALA; EXOPHIALA DERMATITIDIS; EXOPHIALA JEANSELMEI; EXOPHIALA MONILIAE; EXOPHIALA SPINIFERA; FONSECAEA COMPACTA; FONSECAEA PEDROSOI; FUNGAL VIRULENCE; FUNGUS; GENE SEQUENCE; HORTAEA WERNECKII; HYPHOMYCETES; MICROBIAL DIVERSITY; MICROBIAL IDENTIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PHIALOPHORA VERRUSA; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; SEQUENCE ANALYSIS; TAXONOMY;

CLADOPHIALOPHORA BANTIANA; CLADOPHIALOPHORA CARRIONII; CLADOSPORIUM; EXOPHIALA DERMATITIDIS; EXOPHIALA JEANSELMEI; EXOPHIALA MONILIAE; EXOPHIALA SPINIFERA; FONSECAEA COMPACTA; FONSECAEA PEDROSOI; HORTAEA WERNECKII; PHIALOPHORA VERRUCOSA;

EID: 0346460246     PISSN: 09288244     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0928-8244(03)00275-X     Document Type: Article

References (32)

1. Kwon-Chung, K.J. and Bennett, J.E. (1992) Chromoblastomycosis. In: Medical Mycology (Kwon-Chung, K.J. and Bennett, J.E., Eds.), p. 337. Lea and Febiger, Philadelphia, PA.
2. McGinnis M.R. Chromoblastomycosis and phaeohyphomycosis: new concepts, diagnosis, and mycology. J. Am. Acad. Dermatol. 8:1983;1-16.
3. Miyaji, M. and Nishimura, K. (1991) Chromoblastomycosis. In: A Dictionary of Medical Mycology, 2nd edn. (Miyaji, M. and Nishimura, K., Eds.), p. 69. Kyowa kikaku tsushin, Tokyo (in Japanese).
4. Duggan J.M., Wolf M.D., Kauffman C.A. Phialophora infection in an AIDS patient. Mycoses. 38:1995;215-218.
5. Rossmann S.N., Cernoch P.L., Davis J.R. Dematiaceous fungi are an increasing cause of human disease. Clin. Infect. Dis. 22:1996;73-80.
6. Lundstrom T.S., Fairfax M.R., Dugan M.C., Vazquez J.A., Chandrasekar P.H., Abella E., Kasten-Sportes C. Phialophora verrucosa infection in a BMT patient. Bone Marrow Transplant. 20:1997;789-791.
7. Mesa A., Henao J., Durango G. Phaeohyphomycosis in kidney transplant patients. Clin. Transplant. 13:1999;273-276.
8. Nucci M., Akiti T., Barreiros G., Silveira F., Revankar S.G., Sutton D.A., Patterson T.F. Nosocomial fungemia due to Exophiala jeanselmei var. jeanselmei and a Rhinocladielle species: newly described causes of bloodstream infection. J. Clin. Microbiol. 39:2001;514-518.
9. Lyke K.E., Miller N.S., Towne L., Merz W.G. A case of cutaneous ulcerative alternariosis: rare association with diabetes mellitus and unusual failure of itraconazole treatment. Clin. Infect. Dis. 32:2001;1178-1187.
10. Chua J.D., Gordon S.M., Banbury J., Hall G.S., Procop G.W. Relapsing Exophiala jeanselmei phaeohyphomycosis in a lung-transplant patient. Transplant. Infect. Dis. 3:2001;235-238.
11. Sharma N.L., Mahajan V., Sharma R.C., Sharma A. Subcutaneous phaeohyphomycosis in India: a case report and review. Int. J. Dermatol. 41:2002;16-20.
12. Keyser A., Schmid F.X., Linde H.J., Merk J., Birnbaum D.E. Disseminated Cladophialophora bantiana infection in a heart transplant recipient. J. Heart Lung Transplant. 21:2002;503-505.
13. Revankar S.G., Patterson J.E., Sutton D.A., Pullent R., Rinaldi M.G. Disseminated phaeohyphomycosis: review of an emerging mycosis. Clin. Infect. Dis. 34:2002;467-476.
14. Steadham J.E., Geis P.A., Simmank J.L. Use of carbonhydrate and nitrate assimilations in the identification of dematiaceous fungi. Diagn. Microbiol. Infect. Dis. 5:1986;71-75.
15. de Hoog G.S., Gueho E., Masclaux F., Gerrits van den Ende A.H., Kwon-Chung K.J., McGinnis M.R. Nutritional physiology and taxonomy of human-pathogenic Cladosporium-Xylohypha species. J. Med. Vet. Mycol. 33:1995;339-347.
16. Fothergill A.W. Identification of dematiaceous fungi and their role in human disease. Clin. Infect. Dis. 22:1996;S179-184.
17. Uijthof J.M., Van Belkum A., de Hoog G.S., Haase G. Exophiala dermatitidis and Sarcinomyces phaeomuriformis: ITS-sequencing and nutritional physiology. Med. Mycol. 36:1998;143-151.
18. de Hoog G.S., Takeo K., Yoshida S., Göttlich E., Nishimura K., Miyaji M. Phaeoanamorphic life cycle of Exophiala (Wangiella) dermatitidis. Antonie van Leeuwenhoek. 65:1994;143-153.
19. Kurtzman C.P., Robnett C.J. Identification of clinically important ascomycetous yeasts based on nucleotide divergence in the 5′end of the large subunit (26S) ribosomal DNA gene. J. Clin. Microbiol. 35:1997;1216-1223.
20. Kurtzman C.P., Robnett C.J. Identifcation and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek. 73:1998;331-371.
21. Voigt K., Cigelnik E., O'Donnell K. Phylogeny and PCR identification of clinically important Zygomycetes based on nuclear ribosomal-DNA sequence data. J. Clin. Microbiol. 37:1999;3957-3964.
22. Makimura K., Murayama S.Y., Yamaguchi H. Detection of wide range of medically important fungi by the polymerase chain reaction. J. Med. Microbiol. 40:1994;358-364.
23. O'Donnell, K. (1993) Fusarium and its near relatives. In: The Fungal Holomorph: Mitotic, Meiotic and Pleomorphic Speciation in Fungal Systematics (Reynolds, D.R. and Taylor, J.W. Eds.), pp. 225-233. CAB International, Wallingford.
24. Higgins D.G., Bleasby A.J., Fuchs R. CLUSTAL W: Improved software for multiple sequence alignment. Cabios. 8:1992;189-191.
25. Uijthof J.M.J., de Hoog G.S., deCock A.W., Takeo K., Nishimura K. Pathogenicity of strains of the black yeast Exophiala (Wangiella) dermatitidis: an evaluation based on polymerase chain reaction. Mycoses. 37:1994;235-242.
26. Caligiorne R.B., Resende M.A., Paiva E., Azevedo V. Use of RAPD (random amplified polymorphic DNA) to analyse genetic diversity of dematiaceous fungal pathogens. Can. J. Microbiol. 45:1999;408-412.
27. Caligiorne R.B., de Resende M.A., Dias-Neto E., Oliveira S.C., Azevedo V. Dematiaceous fungal pathogens: analysis of ribosomal DNA gene polymorphism by polymerase chain reaction-restriction fragment length polymorphism. Mycoses. 42:1999;609-614.
28. Yamagishi Y., Kawasaki K., Ishizaki H. Mitochondrial DNA analysis of Phialophora verrucosa. Mycoses. 40:1997;329-334.
29. Ishizaki H., Kawasaki M., Nishimura K., Miyaji M. Mitochondrial DNA analysis of Exophiala spinifera. Mycopathologia. 131:1995;67-70.
30. de Hoog, G.S., Guarro, J., Gené, J. and Figueras, M.J. (2002) Hyphomycetes. Genus Fonsecaea. In: Atlas of Clinical Fungi, 2nd edn. (de Hoog, G.S., Guarro, J., Gené, J. and Figueras, M.J., Eds.), pp. 676-680. Centraalbureau voor Schimmelcultures, Utrecht, and Universitat Rovira i Virgili, Reus.
31. Espinel-Ingroff A., McGinnis M.R., Pincus D.H., Goldson P.R., Kerkering T.M. Evaluation of the API 20C yeast identification system for the differentiation of some dematiaceous fungi. J. Clin. Microbiol. 27:1989;2565-2569.
32. Attili D.S., de Hoog G.S., Pizzirani-Kleiner A.A. rDNA-RFLP and ITS sequencing of species of the genus Fonsecaea, agents of chromoblastomycosis. Med. Mycol. 36:1998;219-225.