메뉴 건너뛰기




Volumn 2, Issue 1, 2011, Pages

Two-dimensional enzyme diffusion in laterally confined DNA monolayers

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; OLIGOMER; DNA; RESTRICTION ENDONUCLEASE;

EID: 79955666989     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms1296     Document Type: Article
Times cited : (23)

References (52)
  • 1
    • 77950792003 scopus 로고    scopus 로고
    • Crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm
    • McGufee, S. R. & Elcock, A. H. Difusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm. PLoS Comput. Biol. 6, 18 (2010).
    • (2010) PLoS Comput. Biol. , vol.6 , pp. 18
    • McGufee, S.R.1    Difusion, H.E.A.2
  • 3
    • 58149234737 scopus 로고    scopus 로고
    • Real-time DNA sequencing from single polymerase molecules
    • Eid, J. et al. Real-time DNA sequencing from single polymerase molecules. Science 323, 133-138 (2009).
    • (2009) Science , vol.323 , pp. 133-138
    • Eid, J.1
  • 5
    • 45849144754 scopus 로고    scopus 로고
    • Surface-structure-regulated cell-membrane penetration by monolayer-protected nanoparticles
    • Verma, A. et al. Surface-structure-regulated cell-membrane penetration by monolayer-protected nanoparticles. Nat. Mater. 7, 588-595 (2008).
    • (2008) Nat. Mater. , vol.7 , pp. 588-595
    • Verma, A.1
  • 6
    • 77955819966 scopus 로고    scopus 로고
    • Attomole detection of mesophilic DNA polymerase products by nanoparticle-enhanced surface plasmon resonance imaging on glassifed gold surfaces
    • Giford, L. K., Sendroiu, I. E., Corn, R. M. & Lupták, A. Attomole detection of mesophilic DNA polymerase products by nanoparticle- enhanced surface plasmon resonance imaging on glassifed gold surfaces. J. Am. Chem. Soc. 132, 9265-9267 (2010).
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 9265-9267
    • Giford, L.K.1    Sendroiu, I.E.2    Corn, R.M.3    Lupták, A.4
  • 7
    • 38149040049 scopus 로고    scopus 로고
    • Self-assembled water-soluble nucleic acid probe tiles for label-free RNA hybridization assays
    • Ke, Y. G., Lindsay, S., Chang, Y., Liu, Y & Yan, H. Self-assembled water-soluble nucleic acid probe tiles for label-free RNA hybridization assays. Science 319, 180-183 (2008).
    • (2008) Science , vol.319 , pp. 180-183
    • Ke, Y.G.1    Lindsay, S.2    Chang, Y.3    Liu, Y.4    Yan, H.5
  • 8
    • 76349083858 scopus 로고    scopus 로고
    • Semisynthetic DNA-protein conjugates for biosensing and nanofabrication
    • Niemeyer, C. M. Semisynthetic DNA-protein conjugates for biosensing and nanofabrication. Angew. Chem. Int. Ed. 49, 1200-1216 (2010).
    • (2010) Angew. Chem. Int. Ed. , vol.49 , pp. 1200-1216
    • Niemeyer, C.M.1
  • 9
    • 77949893418 scopus 로고    scopus 로고
    • Fabrication of biomolecular devices via supramolecular contact-based approaches
    • Akbulut, O., Yu, A. A. & Stellacci, F. Fabrication of biomolecular devices via supramolecular contact-based approaches. Chem. Soc. Rev. 39, 30-37 (2010).
    • (2010) Chem. Soc. Rev. , vol.39 , pp. 30-37
    • Akbulut, O.1    Yu, A.A.2    Stellacci, F.3
  • 11
    • 55549127533 scopus 로고    scopus 로고
    • Selective enzymatic labeling to detect packing-induced denaturation of double-stranded DNA at interfaces
    • Peled, D., Daube, S. S. & Naaman, R. Selective enzymatic labeling to detect packing-induced denaturation of double-stranded DNA at interfaces. Langmuir 24, 11842-11846 (2008).
    • (2008) Langmuir , vol.24 , pp. 11842-11846
    • Peled, D.1    Daube, S.S.2    Naaman, R.3
  • 12
    • 46749136342 scopus 로고    scopus 로고
    • Self-assembled DNA nanostructures for distance-dependent multivalent ligand-protein binding
    • Rinker, S., Ke, Y, Liu, Y, Chhabra, R. & Yan, H. Self-assembled DNA nanostructures for distance-dependent multivalent ligand-protein binding. Nat. Nanotechnol. 3, 418-422 (2008).
    • (2008) Nat. Nanotechnol. , vol.3 , pp. 418-422
    • Rinker, S.1    Ke, Y.2    Liu, Y.3    Chhabra, R.4    Yan, H.5
  • 13
    • 65549170920 scopus 로고    scopus 로고
    • Self-assembly of a nanoscale DNA box with a controllable lid
    • Andersen, E. S. et al. Self-assembly of a nanoscale DNA box with a controllable lid. Nature 459, 73-76 (2009).
    • (2009) Nature , vol.459 , pp. 73-76
    • Andersen, E.S.1
  • 14
    • 77952392836 scopus 로고    scopus 로고
    • Molecular robots guided by prescriptive landscapes
    • Lund, K. et al. Molecular robots guided by prescriptive landscapes. Nature 465, 206-210 (2010).
    • (2010) Nature , vol.465 , pp. 206-210
    • Lund, K.1
  • 15
    • 0034642536 scopus 로고    scopus 로고
    • DNA computing on surfaces
    • Liu, Q. H. et al. DNA computing on surfaces. Nature 403, 175-179 (2000).
    • (2000) Nature , vol.403 , pp. 175-179
    • Liu, Q.H.1
  • 16
    • 0035883723 scopus 로고    scopus 로고
    • Structure and function of type II restriction endonucleases
    • Pingoud, A. & Jeltsch, A. Structure and function of type II restriction endonucleases. Nucl Acids Res. 29, 3705-3727 (2001). (Pubitemid 32910514)
    • (2001) Nucleic Acids Research , vol.29 , Issue.18 , pp. 3705-3727
    • Pingoud, A.1    Jeltsch, A.2
  • 17
    • 34548565667 scopus 로고    scopus 로고
    • Quantitative analysis of chromosome conformation capture assays (3C-qPCR)
    • Hagege, H. et al. Quantitative analysis of chromosome conformation capture assays (3C-qPCR). Nat. Protoc. 2, 1722-1733 (2007).
    • (2007) Nat. Protoc. , vol.2 , pp. 1722-1733
    • Hagege, H.1
  • 18
    • 0035936116 scopus 로고    scopus 로고
    • Programmable and autonomous computing machine made of biomolecules
    • DOI 10.1038/35106533
    • Benenson, Y et al. Programmable and autonomous computing machine made of biomolecules. Nature 414, 430-434 (2001). (Pubitemid 34173721)
    • (2001) Nature , vol.414 , Issue.6862 , pp. 430-434
    • Benenson, Y.1    Paz-Elizur, T.2    Adar, R.3    Keinan, E.4    Llvneh, Z.5    Shapiro, E.6
  • 19
    • 3042579602 scopus 로고    scopus 로고
    • How do site-specific DNA-binding proteins find their targets?
    • DOI 10.1093/nar/gkh624
    • Halford, S. E. & Marko, J. F. How do site-specifc DNA-binding proteins fnd their targets? Nucl. Acids Res. 32, 3040-3052 (2004). (Pubitemid 39022995)
    • (2004) Nucleic Acids Research , vol.32 , Issue.10 , pp. 3040-3052
    • Halford, S.E.1    Marko, J.F.2
  • 21
    • 77951262614 scopus 로고    scopus 로고
    • Considerations of solid-phase DNA amplifcation
    • Palanisamy, R., Connolly, A. R. & Trau, M. Considerations of solid-phase DNA amplifcation. Bioconjug. Chem. 21, 690-695 (2010).
    • (2010) Bioconjug. Chem. , vol.21 , pp. 690-695
    • Palanisamy, R.1    Connolly, A.R.2    Trau, M.3
  • 22
    • 66749172956 scopus 로고    scopus 로고
    • Steric efects and mass-transfer limitations surrounding amplifcation reactions on immobilized long and clinically relevant DNA templates
    • McCalla, S. E., Luryi, A. L. & Tripathi, A. steric efects and mass-transfer limitations surrounding amplifcation reactions on immobilized long and clinically relevant DNA templates. Langmuir 25, 6168-6175 (2009).
    • (2009) Langmuir , vol.25 , pp. 6168-6175
    • McCalla, S.E.1    Luryi, A.L.2    Tripathi, A.3
  • 26
    • 0011705680 scopus 로고    scopus 로고
    • Production of Nanostructures of DNA on Surfaces
    • DOI 10.1021/nl025626x
    • Liu, M., Amro, N. A., Chow, C. S. & Liu, G. Y Production of nanostructures of DNA on surfaces. Nano Lett. 2, 863-867 (2002). (Pubitemid 135706450)
    • (2002) Nano Letters , vol.2 , Issue.8 , pp. 863-867
    • Liu, M.1    Amro, N.A.2    Chow, C.S.3    Liu, G.-Y.4
  • 27
    • 0000219104 scopus 로고    scopus 로고
    • Nanometer-scale fabrication by simultaneous nanoshaving and molecular self-assembly
    • Xu, S. & Liu, G. Y Nanometer-scale fabrication by simultaneous nanoshaving and molecular self-assembly. Langmuir 13, 127-129 (1997). (Pubitemid 127591907)
    • (1997) Langmuir , vol.13 , Issue.2 , pp. 127-129
    • Xu, S.1    Liu, G.-Y.2
  • 28
    • 0242292018 scopus 로고    scopus 로고
    • Label-Free Detection of DNA Hybridization at the Nanoscale: A Highly Sensitive and Selective Approach Using Atomic-Force Microscopy
    • DOI 10.1002/anie.200352178
    • Zhou, D., Sinniah, K., Abell, C. & Rayment, T. Label-free detection of DNA hybridization at the nanoscale: a highly sensitive and selective approach using atomic-force microscopy13. Angew. Chem. Int. Ed. 42, 4934-4937 (2003). (Pubitemid 37345395)
    • (2003) Angewandte Chemie - International Edition , vol.42 , Issue.40 , pp. 4934-4937
    • Zhou, D.1    Sinniah, K.2    Abell, C.3    Rayment, T.4
  • 29
    • 78650644710 scopus 로고    scopus 로고
    • Brownian motion of stif flaments in a crowded environment
    • Fakhri, N., MacKintosh, F. C, Lounis, B., Cognet, L. & Pasquali, M. Brownian motion of stif flaments in a crowded environment. Science 330, 1804-1807 (2010).
    • (2010) Science , vol.330 , pp. 1804-1807
    • Fakhri, N.1    MacKintosh, F.C.2    Lounis, B.3    Cognet, L.4    Pasquali, M.5
  • 30
    • 0345201159 scopus 로고
    • Rotational relaxation-time of rigid rod-like macromolecule in concentrated solution
    • Doi, M. Rotational relaxation-time of rigid rod-like macromolecule in concentrated solution. J. De Physique 36, 607-611 (1975).
    • (1975) J. de Physique , vol.36 , pp. 607-611
    • Doi, M.1
  • 31
    • 0022814580 scopus 로고
    • Rotational difusion of short DNA fragments in polyacrylamide gels: An electric birefringence study
    • Wijmenga, S. S. & Maxwell, A. Rotational difusion of short DNA fragments in polyacrylamide gels: an electric birefringence study. Biopolymers 25, 2173-2186 (1986).
    • (1986) Biopolymers , vol.25 , pp. 2173-2186
    • Wijmenga, S.S.1    Maxwell, A.2
  • 32
    • 0037195315 scopus 로고    scopus 로고
    • Use of atomic force microscopy for making addresses in DNA coatings
    • DOI 10.1021/la0258547
    • Zhou, D., Sinniah, K., Abell, C. & Rayment, T. Use of atomic force microscopy for making addresses in DNA coatings. Langmuir 18, 8278-8281 (2002). (Pubitemid 35289532)
    • (2002) Langmuir , vol.18 , Issue.22 , pp. 8278-8281
    • Zhou, D.1    Sinniah, K.2    Abell, C.3    Rayment, T.4
  • 33
    • 0023645197 scopus 로고
    • Proteins encoded by the DpnII restriction gene cassette: Two methylases and an endonuclease
    • de la Campa, A. G., Kale, P., Springhorn, S. S. & Lacks, S. A. Proteins encoded by the DpnII restriction gene cassette: two methylases and an endonuclease. J. Mol. Biol. 196, 457-469 (1987).
    • (1987) J. Mol. Biol. , vol.196 , pp. 457-469
    • De La Campa, A.G.1    Kale, P.2    Springhorn, S.S.3    Lacks, S.A.4
  • 34
    • 0030031596 scopus 로고    scopus 로고
    • Partitioning and diffusion of proteins and linear polymers in polyacrylamide gels
    • Tong, J. & Anderson, J. L. Partitioning and difusion of proteins and linear polymers in polyacrylamide gels. Biophys. J. 70, 1505-1513 (1996). (Pubitemid 26073062)
    • (1996) Biophysical Journal , vol.70 , Issue.3 , pp. 1505-1513
    • Tong, J.1    Anderson, J.L.2
  • 36
    • 0035945270 scopus 로고    scopus 로고
    • The effect of surface probe density on DNA hybridization
    • Peterson, A. W., Heaton, R. J. & Georgiadis, R. M. Te efect of surface probe density on DNA hybridization. Nucl. Acids Res. 29, 5163-5168 (2001). (Pubitemid 34065435)
    • (2001) Nucleic Acids Research , vol.29 , Issue.24 , pp. 5163-5168
    • Peterson, A.W.1    Heaton, R.J.2    Georgiadis, R.M.3
  • 37
    • 78650123870 scopus 로고    scopus 로고
    • Reversible and controllable nanolocomotion of an RNA-processing machinery
    • Lee, G., Hartung, S., Hopfner, K.-P. & Ha, T. Reversible and controllable nanolocomotion of an RNA-processing machinery. Nano Lett. 10, 5123-5130 (2010).
    • (2010) Nano Lett. , vol.10 , pp. 5123-5130
    • Lee, G.1    Hartung, S.2    Hopfner, K.-P.3    Ha, T.4
  • 38
    • 0031694675 scopus 로고    scopus 로고
    • A DNA self-assembled monolayer for the specific attachment of unmodified double- or single-stranded DNA
    • Bamdad, C. A DNA self-assembled monolayer for the specifc attachment of unmodifed double-or single-stranded DNA. Biophys. J. 75, 1997-2003 (1998). (Pubitemid 28455195)
    • (1998) Biophysical Journal , vol.75 , Issue.4 , pp. 1997-2003
    • Bamdad, C.1
  • 41
    • 1842450609 scopus 로고    scopus 로고
    • Direct Detection of Genomic DNA by Enzymatically Amplified SPR Imaging Measurements of RNA Microarrays
    • DOI 10.1021/ja039823p
    • Goodrich, T. T., Lee, H. J. & Corn, R. M. Direct detection of genomic DNA by enzymatically amplifed Spr imaging measurements of RNA microarrays. J Am. Chem. Soc. 126, 4086-4087 (2004). (Pubitemid 38453852)
    • (2004) Journal of the American Chemical Society , vol.126 , Issue.13 , pp. 4086-4087
    • Goodrich, T.T.1    Lee, H.J.2    Corn, R.M.3
  • 42
    • 28544447914 scopus 로고    scopus 로고
    • Fabricating RNA microarrays with RNA-DNA surface ligation chemistry
    • DOI 10.1021/ac0516180
    • Lee, H. J., Wark, A. W., Li, Y. & Corn, R. M. Fabricating RNA microarrays with RNA-DNA surface ligation chemistry. Anal Chem. 77, 7832-7837 (2005). (Pubitemid 41746253)
    • (2005) Analytical Chemistry , vol.77 , Issue.23 , pp. 7832-7837
    • Lee, H.J.1    Wark, A.W.2    Li, Y.3    Corn, R.M.4
  • 43
    • 39449136429 scopus 로고    scopus 로고
    • Controlling the reactivity of adsorbed DNA on template surfaces
    • DOI 10.1021/la702799v
    • Kaufmann, R., Averbukh, I., Naaman, R. & Daube, S. S. Controlling the reactivity of adsorbed DNA on template surfaces. Langmuir 24, 927-931 (2008). (Pubitemid 351270964)
    • (2008) Langmuir , vol.24 , Issue.3 , pp. 927-931
    • Kaufmann, R.1    Averbukh, I.2    Naaman, R.3    Daube, S.S.4
  • 44
    • 35349031045 scopus 로고    scopus 로고
    • Replication of DNA microarrays prepared by in situ oligonucleotide polymerization and mechanical transfer
    • DOI 10.1021/ac0715219
    • Kim, J. & Crooks, R. M. Replication of DNA microarrays prepared by in situ oligonucleotide polymerization and mechanical transfer. Anal. Chem. 79, 7267-7274 (2007). (Pubitemid 47606092)
    • (2007) Analytical Chemistry , vol.79 , Issue.19 , pp. 7267-7274
    • Kim, J.1    Crooks, R.M.2
  • 45
    • 65249103925 scopus 로고    scopus 로고
    • Protein density profle at the interface of water with oligo(ethylene glycol) self-assembled monolayers
    • Skoda, M. W. A. et al., Protein density profle at the interface of water with oligo(ethylene glycol) self-assembled monolayers. Langmuir 25, 4056-4064 (2009).
    • (2009) Langmuir , vol.25 , pp. 4056-4064
    • Skoda, M.W.A.1
  • 46
    • 0040292131 scopus 로고    scopus 로고
    • Probing resistance to protein adsorption of oligo(ethylene glycol)-terminated self-assembled monolayers by scanning force microscopy
    • Feldman, K., Hahner, G., Spencer, N. D., Harder, P. & Grunze, M. Probing resistance to protein adsorption of oligo(ethylene glycol)-terminated self-assembled monolayers by scanning force microscopy. J. Am. Chem. Soc. 121, 10134-10141 (1999).
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 10134-10141
    • Feldman, K.1    Hahner, G.2    Spencer, N.D.3    Harder, P.4    Grunze, M.5
  • 47
    • 52649137594 scopus 로고    scopus 로고
    • Evaluation of hydrodynamic size and zeta-potential of surface-modifed Au nanoparticle-DNA conjugates via Ferguson analysis
    • Park, S. & Hamad-Schiferli, K. Evaluation of hydrodynamic size and zeta-potential of surface-modifed Au nanoparticle-DNA conjugates via Ferguson analysis. J. Phys. Chem. C 112, 7611-7616 (2008).
    • (2008) J. Phys. Chem. C , vol.112 , pp. 7611-7616
    • Park, S.1    Hamad-Schiferli, K.2
  • 48
    • 76749101225 scopus 로고    scopus 로고
    • Interfacial complexation explains anomalous difusion in nanofuids
    • Ozturk, S., Hassan, Y. A. & Ugaz, V. M. Interfacial complexation explains anomalous difusion in nanofuids. Nano Lett. 10, 665-671 (2010).
    • (2010) Nano Lett. , vol.10 , pp. 665-671
    • Ozturk, S.1    Hassan, Y.A.2    Ugaz, V.M.3
  • 49
    • 33846862689 scopus 로고    scopus 로고
    • A patterned anisotropic nanofluidic sieving structure for continuous-flow separation of DNA and proteins
    • DOI 10.1038/nnano.2006.206
    • Fu, J. P., Schoch, R. B., Stevens, A. L., Tannenbaum, S. R. & Han, J. Y A patterned anisotropic nanofuidic sieving structure for continuous-fow separation of DNA and proteins. Nat. Nanotechnol 2, 121-128 (2007). (Pubitemid 46226372)
    • (2007) Nature Nanotechnology , vol.2 , Issue.2 , pp. 121-128
    • Fu, J.1    Schoch, R.B.2    Stevens, A.L.3    Tannenbaum, S.R.4    Han, J.5
  • 50
    • 77956373200 scopus 로고    scopus 로고
    • Extended-nano fuidic systems for analytical and chemical technologies
    • Mawatari, K., Tsukahara, T., Sugii, Y & Kitamori, T. Extended-nano fuidic systems for analytical and chemical technologies. Nanoscale 2, 1588-1595 (2010).
    • (2010) Nanoscale , vol.2 , pp. 1588-1595
    • Mawatari, K.1    Tsukahara, T.2    Sugii, Y.3    Kitamori, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.