Major Lineages of the Genus Lilium (Liliaceae) Based on nrDNA ITS Sequences, with Special Emphasis on the Korean Species

Journal of Plant Biology

Volumn 54, Issue 3, 2011, Pages 159-171

  Lee, Chang Shook ^a   Kim, Seung Chul ^b   Yeau, Sung Hee ^a   Lee, Nam Sook ^a  

^a Ewha Womans University   (South Korea)

^b Sungkyunkwan University   (South Korea)

Author keywords

ITS; Korean Lilium; Liliaceae; Lilium; Major lineages

Indexed keywords

CARDIOCRINUM; FRITILLARIA (ANGIOSPERM); LILIACEAE; LILIUM; LILIUM AMABILE; LILIUM CALLOSUM; LILIUM HANSONII; MAGNOLIOPHYTA; NOTHOLIRION;

EID: 79955590330     PISSN: 12269239     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12374-011-9152-0     Document Type: Article

References (44)

1. Asano Y (1986) A numerical taxonomic study of the genus Lilium in Japan. J Fac Agric Hokkaido Univ 62: 333-341.
2. Baker JG (1871) Gardeners chronicle 104: 1650.
3. Baranova MV (1969) The geographical distribution of Lilium species in the flora of the USSR. Lily Year Book RHS 32: 39-55.
4. Baranova MV (1988) Konspekt sistemy roda Lilium (Liliaceae). [A synopsis of thesystem of the genus Lilium (Liliaceae)]. Bot Zurn (Moscow Leningra) 73: 1319-1329.
5. Comber HF (1949) A new classification of the genus Lilium. Lily Year Book RHS 13: 86-105.
6. Dubouzet JG, Shinoda K (1999) Phylogenetic analysis of the internal transcribed spacer region of Japanese Lilium species. Theor Appl Genet 98: 954-960.
7. Endlicher S (1836-1840) Genera Plantarum Secundum Ordines Naturales Disposita, Fr. Back, Wien.
8. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
9. Fitch W (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20: 406-416.
10. Goldman N (1993) Statistical tests of models of DNA substitution. J Mol Evol 36: 182-198.
11. Hayashi K, Kawano S (2000) Molecular systematics of Lilium and allied genera (Liliaceae): phylogenetic relationships among Lilium and related genera based on rbcL and matK gene sequence data. Plant Species Biol 15: 73-93.
12. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
13. Ikinci N, Oberprieler C, Güner A (2006) On the origin of European lilies: phylogenetic analysis of Lilium section Liriotypus (Liliaceae) using sequences of the nuclear ribosomal transcribed spacers. Willdeowia 36: 647-656.
14. Kim YS, Lee WB (1990a) A study of morphological characters on the genus Lilium L. in Korea. Korean J Plant Tax 20: 165-178, in Korean.
15. Kim YS, Lee WB (1990b) A study of anatomical characters on the genus Lilium L. in Korea. Korean J Plant Tax 20: 179-189, in Korean.
16. Kim YS, Lee WB (1990c) A study of epidermal characters on the genus Lilium L. inKorea by SEM. Korean J Plant Tax 20: 195-207, in Korean.
17. Kim S-C, Crawford DJ, Jansen RK (1996) Phylogenetic relationships among the genera of the subtribe Sonchinae (Asteraceae): evidence from ITS sequences. Syst Bot 21: 417-432.
18. Krause K (1930) Liliaceae. In: Engler A (ed) Die natrichen Pflanzenfamilien, Ed 2. Engelman, Leipzig, pp 227-386.
19. Lee WB (1989) A systematic study on the genus Lilium in Korea. PhD thesis, Korea University. Seoul, Korea.
20. Lee WB, Choi SY, Kim YS (1993) An application of random amplified polymorphic DNA (RAPD) to systematics of some species of Lilium in Korea. Korean J Plant Tax 23: 35-42 (in Korean).
21. Leslie AC (1982) The international lily register, 3rd edn. Royal Horticultural Society, London.
22. Lighty RW (1960) Cytological and interspecific hybridization studies in Lilium L. and their significance for classification. PhD thesis, Cornell University, New York.
23. Lighty RW (1968) Evolutionary trends in lilies. Lily Year Book RHS 31: 40-44.
24. McRae EA (1998) Lily species. In: McRae EA (ed) Lilies: a guide for growers and collectors. Timber, Portland, pp 105-204.
25. Muratovic E, Hidalgo O, Garnatje T, Sijak-Yakovlev S (2010) Molecular phylogeny and genome size in European lilies (genus Lilium, Liliaceae). Adv Sci Lett 3: 180-189.
26. Nishikawa T, Okazaki K, Uchino T, Arakawa K, Nagamine T (1999) A molecular phylogeny of Lilium in the internal transcribed spacer region of nuclear ribosomal DNA. J Mol Evol 49: 238-249.
27. Nishikawa T, Okazaki K, Arakawa K, Nagamine T (2001) Phylogenetic analysis of section Sinomartagon in genus Lilium using sequences of the internal transcribed spacer region in nuclear ribosomal DNA. Breed Sci 51: 39-46.
28. Noda S (1987) "Lily road" toward the Japanese Islands - a cytological view point. In: Shimizu M (ed) The Lilies of Japan. Seibundo-shinkousya, Tokyo, pp 98-110.
29. Nylander JAA (2004) MrModeltest 2. 2. Computer program and documentation distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala.
30. Posada D, Crandall K (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
31. Reichenback HGL (1830) Flora Germanica Excursiora. Cnobloch, Leipzig.
32. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogeneetic inference under mixed models. Bioinformatics 19: 1572-1574.
33. Rønsted N, Law S, Thornton H, Fay MF, Chase MW (2005) Molecular phylogenetic evidence for the monophyly of Fritillaria and Lilium (Liliaceae; Liliales) and the infrageneric classification of Fritillaria. Mol Phylogenet Evol 35: 509-527.
34. Shimizu M (1971) Lilies of Japan. Seibundo Shinko-sha, Tokyo (in Japanese).
35. Smyth DR, Kongsuwan K, Wisdharomn S (1989) A survey of C-band patterns in chromosomes of Lilium (Liliaceae). Pl Syst Evol 163: 53-69.
36. Suh Y, Lee J, Lee S, Lee C, Yeau S-H, Lee NS (2002) Molecular evidence for the taxonomic identity of Korean Adonis (Ranunculaceae). J Plant Res 115: 217-223.
37. Sultana S, Lee S-H, Bang J-W, Choi H-W (2010) Physical mapping of rRNA gene loci and inter-specific relationships in wild Lilium distributed in Korea. J Plant Biol 53: 433-443.
38. Swofford DL (2002) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sinauer, Sunderland.
39. The Genera of Vascular Plants of Korea (2007) Flora of Korea Editorial Committee. Academy, Seoul.
40. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882.
41. Whelan S, Goldman N (1999) Distributions of statistics used for the comparision of models of sequence evolution in phylogenetics. Mol Biol Evol 16: 1292-1299.
42. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, San Diego, pp 315-322.
43. Wilson EH (1925) The lilies of Eastern Asia. Dulau, London.
44. Woodcock HBD, Stearn WT (1950) Lilies of the world. Country Life, London.