-
1
-
-
46849090495
-
Robust, tunable biological oscillations from interlinked positive and negative feedback loops
-
Tsai TY, Choi YS, Ma W, Pomerening JR, Tang C, et al. (2008) Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science 321: 126-129.
-
(2008)
Science
, vol.321
, pp. 126-129
-
-
Tsai, T.Y.1
Choi, Y.S.2
Ma, W.3
Pomerening, J.R.4
Tang, C.5
-
2
-
-
0025826876
-
Modeling the cell division cycle: cdc2 and cyclin interactions
-
Tyson JJ, (1991) Modeling the cell division cycle: cdc2 and cyclin interactions. Proc Natl Acad Sci U S A 88: 7328-7332.
-
(1991)
Proc Natl Acad Sci U S A
, vol.88
, pp. 7328-7332
-
-
Tyson, J.J.1
-
3
-
-
0000401026
-
The heartbeat considered as a relaxation oscillation, and an electrical model of the heart
-
van der Pol B, van der Mark J, (1928) The heartbeat considered as a relaxation oscillation, and an electrical model of the heart. Phil Mag 6: 763-775.
-
(1928)
Phil Mag
, vol.6
, pp. 763-775
-
-
van der Pol, B.1
van der Mark, J.2
-
4
-
-
0002453062
-
Analysis of neural excitability and oscillations
-
In: Koch C, Segev I, editors, Cambridge, MA, MIT Press
-
Rinzel J, Ermentrout B, (1989) Analysis of neural excitability and oscillations. In: Koch C, Segev I, editors. Methods in Neuronal Modeling: From Synapses to Networks Cambridge, MA MIT Press.
-
(1989)
Methods in Neuronal Modeling: From Synapses to Networks
-
-
Rinzel, J.1
Ermentrout, B.2
-
5
-
-
33748441404
-
A model for the circadian rhythm of cyanobacteria that maintains oscillation without gene expression
-
Kurosawa G, Aihara K, Iwasa Y, (2006) A model for the circadian rhythm of cyanobacteria that maintains oscillation without gene expression. Biophys J 91: 2015-2023.
-
(2006)
Biophys J
, vol.91
, pp. 2015-2023
-
-
Kurosawa, G.1
Aihara, K.2
Iwasa, Y.3
-
6
-
-
0015419716
-
Dissipative structures for an allosteric model. Application to glycolytic oscillations
-
Goldbeter A, Lefever R, (1972) Dissipative structures for an allosteric model. Application to glycolytic oscillations. Biophys J 12: 1302-1315.
-
(1972)
Biophys J
, vol.12
, pp. 1302-1315
-
-
Goldbeter, A.1
Lefever, R.2
-
7
-
-
0034655174
-
Modeling of spontaneous activity in developing spinal cord using activity-dependent depression in an excitatory network
-
Tabak J, Senn W, O'Donovan MJ, Rinzel J, (2000) Modeling of spontaneous activity in developing spinal cord using activity-dependent depression in an excitatory network. J Neurosci 20: 3041-3056.
-
(2000)
J Neurosci
, vol.20
, pp. 3041-3056
-
-
Tabak, J.1
Senn, W.2
O'Donovan, M.J.3
Rinzel, J.4
-
8
-
-
33749531532
-
Differential control of active and silent phases in relaxation models of neuronal rhythms
-
Tabak J, O'Donovan MJ, Rinzel J, (2006) Differential control of active and silent phases in relaxation models of neuronal rhythms. J Comput Neurosci 21: 307-328.
-
(2006)
J Comput Neurosci
, vol.21
, pp. 307-328
-
-
Tabak, J.1
O'Donovan, M.J.2
Rinzel, J.3
-
9
-
-
33846455499
-
Dynamical characteristics common to neuronal competition models
-
Shpiro A, Curtu R, Rinzel J, Rubin N, (2007) Dynamical characteristics common to neuronal competition models. J Neurophysiol 97: 462-473.
-
(2007)
J Neurophysiol
, vol.97
, pp. 462-473
-
-
Shpiro, A.1
Curtu, R.2
Rinzel, J.3
Rubin, N.4
-
10
-
-
0003945142
-
Simulating, analyzing, and animating dynamical systems
-
Philadelphia, PA, SIAM
-
Ermentrout B, (2002) Simulating, analyzing, and animating dynamical systems. Philadelphia, PA SIAM.
-
(2002)
-
-
Ermentrout, B.1
-
11
-
-
0032106178
-
Presynaptic modulation of CA3 network activity
-
Staley KJ, Longacher M, Bains JS, Yee A, (1998) Presynaptic modulation of CA3 network activity. Nat Neurosci 1: 201-209.
-
(1998)
Nat Neurosci
, vol.1
, pp. 201-209
-
-
Staley, K.J.1
Longacher, M.2
Bains, J.S.3
Yee, A.4
-
12
-
-
0033559733
-
Spontaneous network activity transiently depresses synaptic transmission in the embryonic chick spinal cord
-
Fedirchuk B, Wenner P, Whelan PJ, Ho S, Tabak J, et al. (1999) Spontaneous network activity transiently depresses synaptic transmission in the embryonic chick spinal cord. J Neurosci 19: 2102-2112.
-
(1999)
J Neurosci
, vol.19
, pp. 2102-2112
-
-
Fedirchuk, B.1
Wenner, P.2
Whelan, P.J.3
Ho, S.4
Tabak, J.5
-
13
-
-
0035017369
-
Post-episode depression of GABAergic transmission in spinal neurons of the chick embryo
-
Chub N, O'Donovan MJ, (2001) Post-episode depression of GABAergic transmission in spinal neurons of the chick embryo. J Neurophysiol 85: 2166-2176.
-
(2001)
J Neurophysiol
, vol.85
, pp. 2166-2176
-
-
Chub, N.1
O'Donovan, M.J.2
-
14
-
-
0036460161
-
Mechanisms controlling bursting activity induced by disinhibition in spinal cord networks
-
Darbon P, Scicluna L, Tscherter A, Streit J, (2002) Mechanisms controlling bursting activity induced by disinhibition in spinal cord networks. Eur J Neurosci 15: 671-683.
-
(2002)
Eur J Neurosci
, vol.15
, pp. 671-683
-
-
Darbon, P.1
Scicluna, L.2
Tscherter, A.3
Streit, J.4
-
15
-
-
79952081194
-
Slow variable dominance and phase resetting in phantom bursting
-
Watts M, Tabak J, Zimliki C, Sherman A, Bertram R, (2011) Slow variable dominance and phase resetting in phantom bursting. J Theor Biol 276: 218-228.
-
(2011)
J Theor Biol
, vol.276
, pp. 218-228
-
-
Watts, M.1
Tabak, J.2
Zimliki, C.3
Sherman, A.4
Bertram, R.5
-
17
-
-
0029619828
-
Experimentally derived model for the locomotor pattern generator in the Xenopus embryo
-
Dale N, (1995) Experimentally derived model for the locomotor pattern generator in the Xenopus embryo. J Physiol 489 (Pt2): 489-510.
-
(1995)
J Physiol
, vol.489
, Issue.Pt2
, pp. 489-510
-
-
Dale, N.1
-
18
-
-
2442592638
-
Sodium along with low-threshold potassium currents enhance coincidence detection of subthreshold noisy signals in MSO neurons
-
Svirskis G, Kotak V, Sanes DH, Rinzel J, (2004) Sodium along with low-threshold potassium currents enhance coincidence detection of subthreshold noisy signals in MSO neurons. J Neurophysiol 91: 2465-2473.
-
(2004)
J Neurophysiol
, vol.91
, pp. 2465-2473
-
-
Svirskis, G.1
Kotak, V.2
Sanes, D.H.3
Rinzel, J.4
-
19
-
-
77957196805
-
Inhibitory modulation of cortical up states
-
Sanchez-Vives MV, Mattia M, Compte A, Perez-Zabalza M, Winograd M, et al. (2010) Inhibitory modulation of cortical up states. J Neurophysiol 104: 1314-1324.
-
(2010)
J Neurophysiol
, vol.104
, pp. 1314-1324
-
-
Sanchez-Vives, M.V.1
Mattia, M.2
Compte, A.3
Perez-Zabalza, M.4
Winograd, M.5
-
20
-
-
35649001607
-
A quantitative description of membrane current and its application to conduction and excitation in nerve
-
Hodgkin AL, Huxley AF, (1952) A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol 117: 500-544.
-
(1952)
J Physiol
, vol.117
, pp. 500-544
-
-
Hodgkin, A.L.1
Huxley, A.F.2
-
21
-
-
33749520844
-
Bursting in excitatory neural networks
-
In: Coombes S, Bressloff PC, editors, Hackensak, NJ, World Scientific
-
Tabak J, Rinzel J, (2005) Bursting in excitatory neural networks. In: Coombes S, Bressloff PC, editors. Bursting: The Genesis of Rhythm in the Nervous System Hackensak, NJ World Scientific pp. 273-301.
-
(2005)
Bursting: The Genesis of Rhythm in the Nervous System
, pp. 273-301
-
-
Tabak, J.1
Rinzel, J.2
-
22
-
-
77549088163
-
Noise-induced transitions in slow wave neuronal dynamics
-
Lim S, Rinzel J, (2010) Noise-induced transitions in slow wave neuronal dynamics. J Comput Neurosci 28: 1-17.
-
(2010)
J Comput Neurosci
, vol.28
, pp. 1-17
-
-
Lim, S.1
Rinzel, J.2
-
23
-
-
0027467804
-
Dynamic clamp: computer-generated conductances in real neurons
-
Sharp AA, O'Neil MB, Abbott LF, Marder E, (1993) Dynamic clamp: computer-generated conductances in real neurons. J Neurophysiol 69: 992-995.
-
(1993)
J Neurophysiol
, vol.69
, pp. 992-995
-
-
Sharp, A.A.1
O'Neil, M.B.2
Abbott, L.F.3
Marder, E.4
-
25
-
-
33751509949
-
Hybrid systems analysis of the control of burst duration by low-voltage-activated calcium current in leech heart interneurons
-
Olypher A, Cymbalyuk G, Calabrese RL, (2006) Hybrid systems analysis of the control of burst duration by low-voltage-activated calcium current in leech heart interneurons. J Neurophysiol 96: 2857-2867.
-
(2006)
J Neurophysiol
, vol.96
, pp. 2857-2867
-
-
Olypher, A.1
Cymbalyuk, G.2
Calabrese, R.L.3
-
26
-
-
0344848562
-
Models of respiratory rhythm generation in the pre-Botzinger complex. I. Bursting pacemaker neurons
-
Butera RJ Jr, Rinzel J, Smith JC, (1999) Models of respiratory rhythm generation in the pre-Botzinger complex. I. Bursting pacemaker neurons. J Neurophysiol 82: 382-397.
-
(1999)
J Neurophysiol
, vol.82
, pp. 382-397
-
-
Butera Jr., R.J.1
Rinzel, J.2
Smith, J.C.3
-
27
-
-
33847211760
-
Bringing cartoons to life
-
Tyson JJ, (2007) Bringing cartoons to life. Nature 445: 823.
-
(2007)
Nature
, vol.445
, pp. 823
-
-
Tyson, J.J.1
-
28
-
-
33748428043
-
A computational tool for the reduction of nonlinear ODE systems possessing multiple scales
-
Clewley R, Rotstein HG, Kopell N, (2005) A computational tool for the reduction of nonlinear ODE systems possessing multiple scales. Multiscale Modeling & Simulation 4: 732-759.
-
(2005)
Multiscale Modeling & Simulation
, vol.4
, pp. 732-759
-
-
Clewley, R.1
Rotstein, H.G.2
Kopell, N.3
-
29
-
-
60449103320
-
Dominant ionic mechanisms explored in spiking and bursting using local low-dimensional reductions of a biophysically realistic model neuron
-
Clewley R, Soto-Trevino C, Nadim F, (2009) Dominant ionic mechanisms explored in spiking and bursting using local low-dimensional reductions of a biophysically realistic model neuron. J Comput Neurosci 26: 75-90.
-
(2009)
J Comput Neurosci
, vol.26
, pp. 75-90
-
-
Clewley, R.1
Soto-Trevino, C.2
Nadim, F.3
-
30
-
-
0015231849
-
Parameter sensitivity as a criterion for evaluating and comparing the performance of biochemical systems
-
Savageau MA, (1971) Parameter sensitivity as a criterion for evaluating and comparing the performance of biochemical systems. Nature 229: 542-544.
-
(1971)
Nature
, vol.229
, pp. 542-544
-
-
Savageau, M.A.1
-
31
-
-
0026802334
-
Metabolic control analysis: a survey of its theoretical and experimental development
-
Fell DA, (1992) Metabolic control analysis: a survey of its theoretical and experimental development. Biochem J 286 (Pt 2): 313-330.
-
(1992)
Biochem J
, vol.286
, Issue.Pt 2
, pp. 313-330
-
-
Fell, D.A.1
-
33
-
-
0036216077
-
Control analysis for autonomously oscillating biochemical networks
-
Reijenga KA, Westerhoff HV, Kholodenko BN, Snoep JL, (2002) Control analysis for autonomously oscillating biochemical networks. Biophys J 82: 99-108.
-
(2002)
Biophys J
, vol.82
, pp. 99-108
-
-
Reijenga, K.A.1
Westerhoff, H.V.2
Kholodenko, B.N.3
Snoep, J.L.4
-
34
-
-
34247609189
-
Inverse bifurcation analysis: application to simple gene systems
-
Lu J, Engl HW, Schuster P, (2006) Inverse bifurcation analysis: application to simple gene systems. Algorithms Mol Biol 1: 11.
-
(2006)
Algorithms Mol Biol
, vol.1
, pp. 11
-
-
Lu, J.1
Engl, H.W.2
Schuster, P.3
-
35
-
-
0027724150
-
Significance of conductances in Hodgkin-Huxley models
-
Foster WR, Ungar LH, Schwaber JS, (1993) Significance of conductances in Hodgkin-Huxley models. J Neurophysiol 70: 2502-2518.
-
(1993)
J Neurophysiol
, vol.70
, pp. 2502-2518
-
-
Foster, W.R.1
Ungar, L.H.2
Schwaber, J.S.3
-
36
-
-
65649117293
-
How multiple conductances determine electrophysiological properties in a multicompartment model
-
Taylor AL, Goaillard JM, Marder E, (2009) How multiple conductances determine electrophysiological properties in a multicompartment model. J Neurosci 29: 5573-5586.
-
(2009)
J Neurosci
, vol.29
, pp. 5573-5586
-
-
Taylor, A.L.1
Goaillard, J.M.2
Marder, E.3
-
37
-
-
0348012925
-
Alternative to hand-tuning conductance-based models: construction and analysis of databases of model neurons
-
Prinz AA, Billimoria CP, Marder E, (2003) Alternative to hand-tuning conductance-based models: construction and analysis of databases of model neurons. J Neurophysiol 90: 3998-4015.
-
(2003)
J Neurophysiol
, vol.90
, pp. 3998-4015
-
-
Prinz, A.A.1
Billimoria, C.P.2
Marder, E.3
-
38
-
-
13744259954
-
Similar network activity from disparate circuit parameters
-
Prinz AA, Bucher D, Marder E, (2004) Similar network activity from disparate circuit parameters. Nat Neurosci 7: 1345-1352.
-
(2004)
Nat Neurosci
, vol.7
, pp. 1345-1352
-
-
Prinz, A.A.1
Bucher, D.2
Marder, E.3
|