메뉴 건너뛰기




Volumn 17, Issue 9, 2011, Pages 2908-2918

Digital transcript profile analysis with aRNA-LongSAGE validates FERMT1 as a potential novel prognostic marker for colon cancer

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSYLHOMOCYSTEINASE; FERMITIN FAMILY MEMBER 1; MEMBRANE PROTEIN; SECERNIN 1; UNCLASSIFIED DRUG;

EID: 79955501978     PISSN: 10780432     EISSN: 15573265     Source Type: Journal    
DOI: 10.1158/1078-0432.CCR-10-2552     Document Type: Article
Times cited : (23)

References (48)
  • 1
    • 23844447529 scopus 로고    scopus 로고
    • Changing patterns of colorectal cancer in China over a period of 20 years
    • Li M, Gu J. Changing patterns of colorectal cancer in China over a period of 20 years. World J Gastroenterol 2005;11:4685-8. (Pubitemid 41179523)
    • (2005) World Journal of Gastroenterology , vol.11 , Issue.30 , pp. 4685-4688
    • Li, M.1    Gu, J.2
  • 3
    • 47949105304 scopus 로고    scopus 로고
    • Colonic and colorectal cancer stem cells: Progress in the search for putative biomarkers
    • DOI 10.1111/j.1469-7580.2008.00917.x
    • Willis ND, Przyborski SA, Hutchison CJ, Wilson RG. Colonic and colorectal cancer stem cells: progress in the search for putative biomarkers. J Anat 2008;213:59-65. (Pubitemid 352044396)
    • (2008) Journal of Anatomy , vol.213 , Issue.1 , pp. 59-65
    • Willis, N.D.1    Przyborski, S.A.2    Hutchison, C.J.3    Wilson, R.G.4
  • 5
    • 65349191398 scopus 로고    scopus 로고
    • Meta-analysis for the evaluation of surrogate endpoints in cancer clinical trials
    • Shi Q, Sargent DJ. Meta-analysis for the evaluation of surrogate endpoints in cancer clinical trials. Int J Clin Oncol 2009;14:102-11.
    • (2009) Int J Clin Oncol , vol.14 , pp. 102-111
    • Shi, Q.1    Sargent, D.J.2
  • 6
    • 66949128313 scopus 로고    scopus 로고
    • Biomarkers in gastroenterology: Between hope and hype comes histopathology
    • Jankowski JA, Odze RD. Biomarkers in gastroenterology: between hope and hype comes histopathology. Am J Gastroenterol 2009;104:1093-6.
    • (2009) Am J Gastroenterol , vol.104 , pp. 1093-1096
    • Jankowski, J.A.1    Odze, R.D.2
  • 7
    • 73349102140 scopus 로고    scopus 로고
    • Epidermal growth factor receptor inhibitors in cancer treatment: Advances, challenges and opportunities
    • Modjtahedi H, Essapen S. Epidermal growth factor receptor inhibitors in cancer treatment: advances, challenges and opportunities. Anticancer Drugs 2009;20:851-5.
    • (2009) Anticancer Drugs , vol.20 , pp. 851-855
    • Modjtahedi, H.1    Essapen, S.2
  • 9
    • 68649116519 scopus 로고    scopus 로고
    • Identification, characterization and utilization of tumor cell selectin ligands in the design of colon cancer diagnostics
    • Thomas SN, Tong Z, Stebe KJ, Konstantopoulos K. Identification, characterization and utilization of tumor cell selectin ligands in the design of colon cancer diagnostics. Biorheology 2009;46:207-25.
    • (2009) Biorheology , vol.46 , pp. 207-225
    • Thomas, S.N.1    Tong, Z.2    Stebe, K.J.3    Konstantopoulos, K.4
  • 11
    • 34547792015 scopus 로고    scopus 로고
    • Comparative study of gene expression by cDNA microarray in human colorectal cancer tissues and normal mucosa
    • Bianchini M, Levy E, Zucchini C, Pinski V, Macagno C, De Sanctis P, et al. Comparative study of gene expression by cDNA microarray in human colorectal cancer tissues and normal mucosa. Int J Oncol 2006;29:83-94.
    • (2006) Int J Oncol , vol.29 , pp. 83-94
    • Bianchini, M.1    Levy, E.2    Zucchini, C.3    Pinski, V.4    Macagno, C.5    De Sanctis, P.6
  • 13
    • 34249690154 scopus 로고    scopus 로고
    • Microarray analysis to reveal genes involved in colon carcinogenesis
    • DOI 10.1517/14656566.8.7.895
    • Joyce T, Pintzas A. Microarray analysis to reveal genes involved in colon carcinogenesis. Expert Opin Pharmacother 2007;8:895-900. (Pubitemid 351227477)
    • (2007) Expert Opinion on Pharmacotherapy , vol.8 , Issue.7 , pp. 895-900
    • Joyce, T.1    Pintzas, A.2
  • 14
    • 34648831071 scopus 로고    scopus 로고
    • Whole genome analysis for liver metastasis gene signatures in colorectal cancer
    • Ki DH, Jeung HC, Park CH, Kang SH, Lee GY, Lee WS, et al. Whole genome analysis for liver metastasis gene signatures in colorectal cancer. Int J Cancer 2007;121:2005-12.
    • (2007) Int J Cancer , vol.121 , pp. 2005-2012
    • Ki, D.H.1    Jeung, H.C.2    Park, C.H.3    Kang, S.H.4    Lee, G.Y.5    Lee, W.S.6
  • 15
    • 0033811848 scopus 로고    scopus 로고
    • Serial analysis of gene expression identifies putative metastasis-associated transcripts in colon tumour cell lines
    • Parle-McDermott A, McWilliam P, Tighe O, Dunican D, Croke DT. Serial analysis of gene expression identifies putative metastasis-associated transcripts in colon tumour cell lines. Br J Cancer 2000;83:725-8.
    • (2000) Br J Cancer , vol.83 , pp. 725-728
    • Parle-McDermott, A.1    McWilliam, P.2    Tighe, O.3    Dunican, D.4    Croke, D.T.5
  • 17
    • 4444258440 scopus 로고    scopus 로고
    • A Serial Analysis of Gene Expression (SAGE) Database Analysis of Chemosensitivity: Comparing Solid Tumors with Cell Lines and Comparing Solid Tumors from Different Tissue Origins
    • DOI 10.1158/0008-5472.CAN-03-3383
    • Stein WD, Litman T, Fojo T, Bates SE. A Serial Analysis of Gene Expression (SAGE) database analysis of chemosensitivity: comparing solid tumors with cell lines and comparing solid tumors from different tissue origins. Cancer Res 2004;64:2805-16. (Pubitemid 38500619)
    • (2004) Cancer Research , vol.64 , Issue.8 , pp. 2805-2816
    • Stein, W.D.1    Litman, T.2    Fojo, T.3    Bates, S.E.4
  • 18
    • 33645340068 scopus 로고    scopus 로고
    • Analysis of gene expression profile in colon cancer using the Cancer Genome Anatomy Project and RNA interference
    • Huang ZG, Ran ZH, Lu W, Xiao SD. Analysis of gene expression profile in colon cancer using the Cancer Genome Anatomy Project and RNA interference. Chin J Dig Dis 2006;7:97-102.
    • (2006) Chin J Dig Dis , vol.7 , pp. 97-102
    • Huang, Z.G.1    Ran, Z.H.2    Lu, W.3    Xiao, S.D.4
  • 22
    • 17444416148 scopus 로고    scopus 로고
    • LongSAGE analysis significantly improves genome annotation: Identifications of novel genes and alternative transcripts in the mouse
    • DOI 10.1093/bioinformatics/bti207
    • Wahl MB, Heinzmann U, Imai K. LongSAGE analysis significantly improves genome annotation: identifications of novel genes and alternative transcripts in the mouse. Bioinformatics 2005;21:1393-400. (Pubitemid 40542691)
    • (2005) Bioinformatics , vol.21 , Issue.8 , pp. 1393-1400
    • Wahl, M.B.1    Heinzmann, U.2    Imai, K.3
  • 23
    • 34248674621 scopus 로고    scopus 로고
    • Serial analysis of gene expression
    • DOI 10.1038/nprot.2006.269, PII NPROT.2006.269
    • Hu M, Polyak K. Serial analysis of gene expression. Nat Protoc 2006;1:1743-60. (Pubitemid 46773294)
    • (2006) Nature Protocols , vol.1 , Issue.4 , pp. 1743-1760
    • Hu, M.1    Polyak, K.2
  • 24
    • 38649091977 scopus 로고    scopus 로고
    • Comparison of RNA amplification methods and chip platforms for microarray analysis of samples processed by laser capture microdissection
    • DOI 10.1002/jcb.21426
    • Caretti E, Devarajan K, Coudry R, Ross E, Clapper ML, Cooper HS, et al. Comparison of RNA amplification methods and chip platforms for microarray analysis of samples processed by laser capture microdissection. J Cell Biochem 2008;103:556-63. (Pubitemid 351171926)
    • (2008) Journal of Cellular Biochemistry , vol.103 , Issue.2 , pp. 556-563
    • Caretti, E.1    Devarajan, K.2    Coudry, R.3    Ross, E.4    Clapper, M.L.5    Cooper, H.S.6    Bellacosa, A.7
  • 25
    • 48249133932 scopus 로고    scopus 로고
    • Gene-expression profiling in Chinese patients with colon cancer by coupling experimental and bioinformatic genomewide gene-expression analyses: Identification and validation of IFITM3 as a biomarker of early colon carcinogenesis
    • Fan J, Peng Z, Zhou C, Qiu G, Tang H, Sun Y, et al. Gene-expression profiling in Chinese patients with colon cancer by coupling experimental and bioinformatic genomewide gene-expression analyses: identification and validation of IFITM3 as a biomarker of early colon carcinogenesis. Cancer 2008;113:266-75.
    • (2008) Cancer , vol.113 , pp. 266-275
    • Fan, J.1    Peng, Z.2    Zhou, C.3    Qiu, G.4    Tang, H.5    Sun, Y.6
  • 27
    • 6944230093 scopus 로고    scopus 로고
    • Colon cancer survival rates with the new American Joint Committee on Cancer sixth edition staging
    • DOI 10.1093/jnci/djh275
    • O'Connell JB, Maggard MA, Ko CY. Colon cancer survival rates with the new American Joint Committee on Cancer sixth edition staging. J Natl Cancer Inst 2004;96:1420-5. (Pubitemid 39429665)
    • (2004) Journal of the National Cancer Institute , vol.96 , Issue.19 , pp. 1420-1425
    • O'Connell, J.B.1    Maggard, M.A.2    Ko, C.Y.3
  • 28
    • 0002386913 scopus 로고
    • On the interpretation of c2 from contingency tables, and the calculation of P
    • Fisher RA. On the interpretation of c2 from contingency tables, and the calculation of P. J R Stat Soc 1922;85:87-94.
    • (1922) J R Stat Soc , vol.85 , pp. 87-94
    • Fisher, R.A.1
  • 29
    • 0001884644 scopus 로고
    • Individual comparisons by ranking methods
    • Wilcoxon F. Individual comparisons by ranking methods. Biometrics Bull 1945;1:80-3.
    • (1945) Biometrics Bull , vol.1 , pp. 80-83
    • Wilcoxon, F.1
  • 30
    • 33845382806 scopus 로고
    • Nonparametric estimation from incomplete observations
    • Kaplan EL, Meier P. Nonparametric estimation from incomplete observations. J Am Stat Assoc 1958;53:457-81.
    • (1958) J Am Stat Assoc , vol.53 , pp. 457-481
    • Kaplan, E.L.1    Meier, P.2
  • 31
    • 0000336139 scopus 로고
    • Regression models and life tables
    • Cox DR. Regression models and life tables. J R Stat Soc Ser B 1972;34:187-220.
    • (1972) J R Stat Soc Ser B , vol.34 , pp. 187-220
    • Cox, D.R.1
  • 32
    • 0023548094 scopus 로고
    • Multivariate survival analysis using Cox's regression model
    • DOI 10.1002/hep.1840070628
    • Christensen E. Multivariate survival analysis using Cox's regression model. Hepatology 1987;7:1346-58. (Pubitemid 18014213)
    • (1987) Hepatology , vol.7 , Issue.6 , pp. 1346-1358
    • Christensen, E.1
  • 33
    • 0037451891 scopus 로고    scopus 로고
    • URP1: A member of a novel family of PH and FERM domain-containing membrane-associated proteins is significantly over-expressed in lung and colon carcinomas
    • DOI 10.1016/S0925-4439(03)00035-8
    • Weinstein EJ, Bourner M, Head R, Zakeri H, Bauer C, Mazzarella R. URP1: a member of a novel family of PH and FERM domain-containing membrane-associated proteins is significantly over-expressed in lung and colon carcinomas. Biochim Biophys Acta 2003;1637:207-16. (Pubitemid 36407771)
    • (2003) Biochimica et Biophysica Acta - Molecular Basis of Disease , vol.1637 , Issue.3 , pp. 207-216
    • Weinstein, E.J.1    Bourner, M.2    Head, R.3    Zakeri, H.4    Bauer, C.5    Mazzarella, R.6
  • 35
    • 0035300437 scopus 로고    scopus 로고
    • Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays
    • Notterman DA, Alon U, Sierk AJ, Levine AJ. Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays. Cancer Res 2001;61:3124-30. (Pubitemid 32691964)
    • (2001) Cancer Research , vol.61 , Issue.7 , pp. 3124-3130
    • Notterman, D.A.1    Alon, U.2    Sierk, A.J.3    Levine, A.J.4
  • 37
    • 0038637402 scopus 로고    scopus 로고
    • Gene expression pattern of laser microdissected colonic crypts of adenomas with low grade dysplasia
    • DOI 10.1136/gut.52.8.1148
    • Lechner S, Müller-Ladner U, Renke B, Schölmerich J, Rüschoff J, Kullmann F. Gene expression pattern of laser microdissected colonic crypts of adenomas with low grade dysplasia. Gut 2003;52:1148-53. (Pubitemid 36877427)
    • (2003) Gut , vol.52 , Issue.8 , pp. 1148-1153
    • Lechner, S.1    Muller-Ladner, U.2    Renke, B.3    Scholmerich, J.4    Ruschoff, J.5    Kullmann, F.6
  • 38
    • 77649181584 scopus 로고    scopus 로고
    • The role of kindlins in cell biology and relevance to human disease
    • Lai-Cheong JE, Parsons M, McGrath JA. The role of kindlins in cell biology and relevance to human disease. Int J Biochem Cell Biol 2010;42:595-603.
    • (2010) Int J Biochem Cell Biol , vol.42 , pp. 595-603
    • Lai-Cheong, J.E.1    Parsons, M.2    McGrath, J.A.3
  • 41
    • 79952471318 scopus 로고    scopus 로고
    • Transforming growth factor-b and the hallmarks of cancer
    • Nov 6. [Epub ahead of print]
    • Tian M, Neil JR, Schiemann WP. Transforming growth factor-b and the hallmarks of cancer. Cell Signal 2010 Nov 6. [Epub ahead of print].
    • (2010) Cell Signal
    • Tian, M.1    Neil, J.R.2    Schiemann, W.P.3
  • 42
    • 79955490390 scopus 로고    scopus 로고
    • They dynamic roles of TGF-β in cancer
    • Sep 27. [Epub ahead of print]
    • Meulmeester E, Ten Dijke P. They dynamic roles of TGF-β in cancer. J Pathol 2010 Sep 27. [Epub ahead of print].
    • (2010) J Pathol
    • Meulmeester, E.1    Ten Dijke, P.2
  • 43
    • 78650955147 scopus 로고    scopus 로고
    • Genetic variation in the TGF{beta}-signaling pathway and colon and rectal cancer risk
    • Nov 10. [Epub ahead of print]
    • Slattery ML, Herrick J, Lundgreen A, Wolff RK. Genetic variation in the TGF{beta}-signaling pathway and colon and rectal cancer risk. Cancer Epidemiol Biomarkers Prev 2010 Nov 10. [Epub ahead of print].
    • (2010) Cancer Epidemiol Biomarkers Prev
    • Slattery, M.L.1    Herrick, J.2    Lundgreen, A.3    Wolff, R.K.4
  • 44
    • 1342346591 scopus 로고    scopus 로고
    • The Kindler Syndrome Protein Is Regulated by Transforming Growth Factor-beta and Involved in Integrin-mediated Adhesion
    • DOI 10.1074/jbc.M307978200
    • Kloeker S, Major MB, Calderwood DA, Ginsberg MH, Jones DA, Beckerle MC. The Kindler syndrome protein is regulated by transforming growth factor-beta and involved in integrin-mediated adhesion. J Biol Chem 2004;279:6824-33. (Pubitemid 38248824)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.8 , pp. 6824-6833
    • Kloeker, S.1    Major, M.B.2    Calderwood, D.A.3    Ginsberg, M.H.4    Jones, D.A.5    Beckerle, M.C.6
  • 47
    • 22544473887 scopus 로고    scopus 로고
    • A theoretical analysis of the selection of differentially expressed genes
    • DOI 10.1142/S0219720005001211, PII S0219720005001211
    • Mukherjee S, Roberts SJ. A theoretical analysis of the selection of differentially expressed genes. J Bioinform Comput Biol 2005;3:627-43. (Pubitemid 41015282)
    • (2005) Journal of Bioinformatics and Computational Biology , vol.3 , Issue.3 , pp. 627-643
    • Mukherjee, S.1    Roberts, S.J.2
  • 48
    • 29844434293 scopus 로고    scopus 로고
    • Automated quantitative analysis (AQUA) of in situ protein expression, antibody concentration, and prognosis
    • DOI 10.1093/jnci/dji427
    • McCabe A, Dolled-Filhart M, Camp RL, Rimm DL. Automated quantitative analysis (AQUA) of in situ protein expression, antibody concentration, and prognosis. J Natl Cancer Inst 2005;97:1808-15. (Pubitemid 43033901)
    • (2005) Journal of the National Cancer Institute , vol.97 , Issue.24 , pp. 1808-1815
    • McCabe, A.1    Dolled-Filhart, M.2    Camp, R.L.3    Rimm, D.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.