Structural correlates of active-staining following magnetic resonance microscopy in the mouse brain

NeuroImage

Volumn 56, Issue 3, 2011, Pages 974-983

  Cleary, Jon O ^a,b   Wiseman, Frances K ^c   Norris, Francesca C ^a,b   Price, Anthony N ^a   Choy, ManKin ^a   Tybulewicz, Victor L J ^d   Ordidge, Roger J ^b   Brandner, Sebastian ^c   Fisher, Elizabeth M C ^c   Lythgoe, Mark F ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

^c UNIVERSITY COLLEGE LONDON   (United Kingdom)

^d NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

Author keywords

Active staining; Grey matter; Immunohistochemistry; Magnetic resonance microscopy; Mouse brain histology; Mouse brain phenotyping; Myelin

Indexed keywords

GADOLINIUM PENTETATE;

ANIMAL TISSUE; ARTICLE; BRAIN CORTEX; BRAIN REGION; BRAIN TISSUE; CEREBELLUM; CONTRAST ENHANCEMENT; CONTROLLED STUDY; DENTATE GYRUS; FEMALE; GRAY MATTER; HIPPOCAMPAL MOSSY FIBER; HIPPOCAMPAL STRATUM LUCIDUM; HISTOLOGY; IMAGE QUALITY; INTERMETHOD COMPARISON; MAGNETIC RESONANCE MICROSCOPY; MALE; MICROSCOPY; MOUSE; MYELINATED NERVE; NEUROANATOMY; NEUROFILAMENT; NEUROIMAGING; NONHUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; OLFACTORY BULB; PERIKARYON; PRIORITY JOURNAL; PROCESS OPTIMIZATION; SIGNAL NOISE RATIO; STAINING; STRATUM PYRAMIDALE; STRUCTURE ANALYSIS; SYNAPSE; TISSUE STRUCTURE; WHITE MATTER;

ANIMALS; BRAIN; CEREBELLUM; CEREBRAL CORTEX; ECHO-PLANAR IMAGING; FEMALE; IMAGE PROCESSING, COMPUTER-ASSISTED; IMMUNOHISTOCHEMISTRY; MAGNETIC RESONANCE IMAGING; MALE; MICE; MICE, INBRED C57BL; PERFUSION; STAINING AND LABELING; THALAMUS; TISSUE FIXATION;

EID: 79955480287     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2011.01.082     Document Type: Article

References (37)

1. Badea A., Ali-Sharief A.A., Johnson G.A. Morphometric analysis of the C57BL/6 J mouse brain. Neuroimage 2007, 37:683-693.
2. Badea A., Nicholls P.J., Johnson G.A., Wetsel W.C. Neuroanatomical phenotypes in the reeler mouse. Neuroimage 2007, 34:1363-1374.
3. Benveniste H., Kim K., Zhang L., Johnson G.A. Magnetic resonance microscopy of the C57BL mouse brain. Neuroimage 2000, 11:601-611.
4. Blamire A.M., Rowe J.G., Styles P., McDonald B. Optimising imaging parameters for post mortem MR imaging of the human brain. Acta Radiol. 1999, 40:593-597.
5. Boretius S., Kasper L., Tammer R., Michaelis T., Frahm J. MRI of cellular layers in mouse brain in vivo. Neuroimage 2009, 47:1252-1260.
6. Cleary J.O., Modat M., Norris F.C., Price A.N., Jayakody S.A., Martinez-Barbera J.P., Greene N.D.E., Hawkes D.J., Ordidge R.J., Scambler P.J., Ourselin S., Lythgoe M.F. Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping 2010, NeuroImage.
7. Cleary J.O., Price A.N., Thomas D.L., Scambler P.J., Kyriakopoulou V., McCue K., Schneider J.E., Ordidge R.J., Lythgoe M.F. Cardiac phenotyping in ex vivo murine embryos using microMRI. NMR Biomed. 2009, 22:857-866.
8. Counsell S.J., Kennea N.L., Herlihy A.H., Allsop J.M., Harrison M.C., Cowan F.M., Hajnal J.V., Edwards B., Edwards A.D., Rutherford M.A. T2 relaxation values in the developing preterm brain. AJNR Am. J. Neuroradiol. 2003, 24:1654-1660.
9. Crusio W.E., Genthner-Grimm G., Schwegler H. A quantitative-genetic analysis of hippocampal variation in the mouse. J. Neurogenet. 1986, 3:203-214.
10. Dawe R.J., Bennett D.A., Schneider J.A., Vasireddi S.K., Arfanakis K. Postmortem MRI of human brain hemispheres: T2 relaxation times during formaldehyde fixation. Magn. Reson. Med. 2009, 61:810-818.
11. Dorr A.E., Lerch J.P., Spring S., Kabani N., Henkelman R.M. High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6 J mice. Neuroimage 2008, 42:60-69.
12. Ellegood J., Pacey L.K., Hampson D.R., Lerch J.P., Henkelman R.M. Anatomical phenotyping in a mouse model of fragile X syndrome with magnetic resonance imaging. Neuroimage 2010, 53:1023-1029.
13. Fraenkel-Conrat H., Olcott H.S. The reaction of formaldehyde with proteins; cross-linking between amino and primary amide or guanidyl groups. J. Am. Chem. Soc. 1948, 70:2673-2684.
14. Haug F.M., Blackstad T.W., Simonsen A.H., Zimmer J. Timm's sulfide silver reaction for zinc during experimental anterograde degeneration of hippocampal mossy fibers. J. Comp. Neurol. 1971, 142:23-31.
15. Huang S., Liu C., Dai G., Kim Y.R., Rosen B.R. Manipulation of tissue contrast using contrast agents for enhanced MR microscopy in ex vivo mouse brain. Neuroimage 2009, 46:589-599.
16. Johnson G.A., Cofer G.P., Fubara B., Gewalt S.L., Hedlund L.W., Maronpot R.R. Magnetic resonance histology for morphologic phenotyping. J. Magn. Reson. Imaging 2002, 16:423-429.
17. Johnson G.A., Cofer G.P., Gewalt S.L., Hedlund L.W. Morphologic phenotyping with MR microscopy: the visible mouse. Radiology 2002, 222:789-793.
18. Kim S., Pickup S., Hsu O., Poptani H. Enhanced delineation of white matter structures of the fixed mouse brain using Gd-DTPA in microscopic MRI. NMR Biomed. 2009, 22:303-309.
19. Kosaka K., Toida K., Aika Y., Kosaka T. How simple is the organization of the olfactory glomerulus? The heterogeneity of so-called periglomerular cells. Neurosci. Res. 1998, 30:101-110.
20. Lerch J.P., Carroll J.B., Spring S., Bertram L.N., Schwab C., Hayden M.R., Henkelman R.M. Automated deformation analysis in the YAC128 Huntington disease mouse model. Neuroimage 2008, 39:32-39.
21. Ma Y., Hof P.R., Grant S.C., Blackband S.J., Bennett R., Slatest L., McGuigan M.D., Benveniste H. A three-dimensional digital atlas database of the adult C57BL/6 J mouse brain by magnetic resonance microscopy. Neuroscience 2005, 135:1203-1215.
22. Mulkern R.V., Wong S.T., Winalski C., Jolesz F.A. Contrast manipulation and artifact assessment of 2D and 3D RARE sequences. Magn. Reson. Imaging 1990, 8:557-566.
23. O'Doherty A., Ruf S., Mulligan C., Hildreth V., Errington M.L., Cooke S., Sesay A., Modino S., Vanes L., Hernandez D., Linehan J.M., Sharpe P.T., Brandner S., Bliss T.V.P., Henderson D.J., Nizetic D., Tybulewicz V.L.J., Fisher E.M.C. An aneuploid mouse strain carrying human chromosome 21 with Down syndrome phenotypes. Science 2005, 309:2033-2037.
24. Petiet A., Hedlund L., Johnson G.A. Staining methods for magnetic resonance microscopy of the rat fetus. J. Magn. Reson. Imaging 2007, 25:1192-1198.
25. Pfefferbaum A., Sullivan E.V., Adalsteinsson E., Garrick T., Harper C. Postmortem MR imaging of formalin-fixed human brain. Neuroimage 2004, 21:1585-1595.
26. Price J.L., Powell T.P. The morphology of the granule cells of the olfactory bulb. J. Cell Sci. 1970, 7:91-123.
27. Purea A., Webb A.G. Reversible and irreversible effects of chemical fixation on the NMR properties of single cells. Magn. Reson. Med. 2006, 56:927-931.
28. Sawiak S.J., Wood N.I., Williams G.B., Morton A.J., Carpenter T.A. Use of magnetic resonance imaging for anatomical phenotyping of the R6/2 mouse model of Huntington's disease. Neurobiol. Dis. 2009, 33:12-19.
29. Sawiak S.J., Wood N.I., Williams G.B., Morton A.J., Carpenter T.A. Voxel-based morphometry in the R6/2 transgenic mouse reveals differences between genotypes not seen with manual 2D morphometry. Neurobiol. Dis. 2009, 33:20-27.
30. Sharief A.A., Johnson G.A. Enhanced T2 contrast for MR histology of the mouse brain. Magn. Reson. Med. 2006, 56:717-725.
31. Shepherd G.M., Chen W.R., Willhite D., Migliore M., Greer C.A. The olfactory granule cell: from classical enigma to central role in olfactory processing. Brain Res. Rev. 2007, 55:373-382.
32. Shepherd T.M., Ozarslan E., King M.A., Mareci T.H., Blackband S.J. Structural insights from high-resolution diffusion tensor imaging and tractography of the isolated rat hippocampus. Neuroimage 2006, 32:1499-1509.
33. Shepherd T.M., Thelwall P.E., Stanisz G.J., Blackband S.J. Aldehyde fixative solutions alter the water relaxation and diffusion properties of nervous tissue. Magn. Reson. Med. 2009, 62:26-34.
34. Tovi M., Ericsson A. Measurements of T1 and T2 over time in formalin-fixed human whole-brain specimens. Acta Radiol. 1992, 33:400-404.
35. Tyszka J.M., Readhead C., Bearer E.L., Pautler R.G., Jacobs R.E. Statistical diffusion tensor histology reveals regional dysmyelination effects in the shiverer mouse mutant. Neuroimage 2006, 29:1058-1065.
36. Uematsu H., Takahashi M., Hatabu H., Chin C.-L., Wehrli S.L., Wehrli F.W., Asakura T. Changes in T1 and T2 observed in brain magnetic resonance imaging with delivery of high concentrations of oxygen. J. Comput. Assist. Tomogr. 2007, 31:662-665.
37. Wetzel M.K., Naska S., Laliberté C.L., Rymar V.V., Fujitani M., Biernaskie J.A., Cole C.J., Lerch J.P., Spring S., Wang S.-H., Frankland P.W., Henkelman R.M., Josselyn S.A., Sadikot A.F., Miller F.D., Kaplan D.R. p73 regulates neurodegeneration and phospho-tau accumulation during aging and Alzheimer's disease. Neuron 2008, 59:708-721.