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Volumn 12, Issue , 2011, Pages

SNPPicker: High quality tag SNP selection across multiple populations

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC VARIATION; JAVA SOURCE CODES; LINKAGE DISEQUILIBRIUM; MULTIPLE POPULATIONS; OPEN SOURCE LICENSE; SEARCH STRATEGIES; SELECTION ALGORITHM; STATISTICAL MODELING;

EID: 79955457459     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-129     Document Type: Article
Times cited : (12)

References (22)
  • 1
    • 0346373654 scopus 로고    scopus 로고
    • Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium
    • 10.1086/381000, 1181897, 14681826
    • Carlson CS, Eberle MA, Rieder MJ, Yi Q, Kruglyak L, Nickerson DA. Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet 2004, 74(1):106-120. 10.1086/381000, 1181897, 14681826.
    • (2004) Am J Hum Genet , vol.74 , Issue.1 , pp. 106-120
    • Carlson, C.S.1    Eberle, M.A.2    Rieder, M.J.3    Yi, Q.4    Kruglyak, L.5    Nickerson, D.A.6
  • 4
    • 32144431911 scopus 로고    scopus 로고
    • An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria
    • Qin ZS, Gopalakrishnan S, Abecasis GR. An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria. Bioinformatics 2006, 22(2):220-225.
    • (2006) Bioinformatics , vol.22 , Issue.2 , pp. 220-225
    • Qin, Z.S.1    Gopalakrishnan, S.2    Abecasis, G.R.3
  • 5
    • 34848860824 scopus 로고    scopus 로고
    • Tag SNP selection for candidate gene association studies using HapMap and gene resequencing data
    • 10.1038/sj.ejhg.5201875, 17568388
    • Xu Z, Kaplan NL, Taylor JA. Tag SNP selection for candidate gene association studies using HapMap and gene resequencing data. Eur J Hum Genet 2007, 15(10):1063-1070. 10.1038/sj.ejhg.5201875, 17568388.
    • (2007) Eur J Hum Genet , vol.15 , Issue.10 , pp. 1063-1070
    • Xu, Z.1    Kaplan, N.L.2    Taylor, J.A.3
  • 6
    • 36549060085 scopus 로고    scopus 로고
    • TAGster: efficient selection of LD tag SNPs in single or multiple populations
    • Xu Z, Kaplan NL, Taylor JA. TAGster: efficient selection of LD tag SNPs in single or multiple populations. Bioinformatics (Oxford, England) 2007, 23(23):3254-3255.
    • (2007) Bioinformatics (Oxford, England) , vol.23 , Issue.23 , pp. 3254-3255
    • Xu, Z.1    Kaplan, N.L.2    Taylor, J.A.3
  • 7
    • 33745686140 scopus 로고    scopus 로고
    • Efficient selection of tagging single-nucleotide polymorphisms in multiple populations
    • 10.1007/s00439-006-0182-5, 16680432
    • Howie BN, Carlson CS, Rieder MJ, Nickerson DA. Efficient selection of tagging single-nucleotide polymorphisms in multiple populations. Hum Genet 2006, 120(1):58-68. 10.1007/s00439-006-0182-5, 16680432.
    • (2006) Hum Genet , vol.120 , Issue.1 , pp. 58-68
    • Howie, B.N.1    Carlson, C.S.2    Rieder, M.J.3    Nickerson, D.A.4
  • 8
    • 42949098801 scopus 로고    scopus 로고
    • Snagger: a user-friendly program for incorporating additional information for tagSNP selection
    • 10.1186/1471-2105-9-174, 2375134, 18371222
    • Edlund CK, Lee WH, Li D, Van Den Berg DJ, Conti DV. Snagger: a user-friendly program for incorporating additional information for tagSNP selection. BMC Bioinformatics 2008, 9:174. 10.1186/1471-2105-9-174, 2375134, 18371222.
    • (2008) BMC Bioinformatics , vol.9 , pp. 174
    • Edlund, C.K.1    Lee, W.H.2    Li, D.3    Van Den Berg, D.J.4    Conti, D.V.5
  • 9
    • 33847688114 scopus 로고    scopus 로고
    • Primer-site SNPs mask mutations
    • 10.1038/nmeth0307-192, 17327845
    • Quinlan AR, Marth GT. Primer-site SNPs mask mutations. Nature methods 2007, 4(3):192. 10.1038/nmeth0307-192, 17327845.
    • (2007) Nature methods , vol.4 , Issue.3 , pp. 192
    • Quinlan, A.R.1    Marth, G.T.2
  • 11
    • 84874758571 scopus 로고    scopus 로고
    • Factors Associated with Success of Custom SNP Assays
    • Last accessed 4/2011
    • Ingersoll R, McMullen IA, Ingersoll G, Pugh EW, Scott AF. Factors Associated with Success of Custom SNP Assays. Last accessed 4/2011., http://snpcenter.grcf.jhmi.edu/downloads/ILMNposter.pdf
    • Ingersoll, R.1    McMullen, I.A.2    Ingersoll, G.3    Pugh, E.W.4    Scott, A.F.5
  • 12
    • 84874758571 scopus 로고    scopus 로고
    • Factors Associated with Success of Custom SNP Assays
    • Last accessed 4/2011
    • Ingersoll R, McMullen IA, Ingersoll G, Pugh EW, AF. Factors Associated with Success of Custom SNP Assays. Last accessed 4/2011., http://snpcenter.grcf.jhmi.edu/downloads/PGAposter.pdf
    • Ingersoll, R.1    McMullen, I.A.2    Ingersoll, G.3    Pugh, E.W.4    AF5
  • 13
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • 10.1038/nature02168, 14685227
    • HapMap C. The International HapMap Project. Nature 2003, 426(6968):789-796. 10.1038/nature02168, 14685227.
    • (2003) Nature , vol.426 , Issue.6968 , pp. 789-796
    • HapMap, C.1
  • 15
    • 42549129218 scopus 로고    scopus 로고
    • From genotype to phenotype: systems biology meets natural variation
    • Benfey PN, Mitchell-Olds T. From genotype to phenotype: systems biology meets natural variation. Science (New York, NY) 2008, 320(5875):495-497.
    • (2008) Science (New York, NY) , vol.320 , Issue.5875 , pp. 495-497
    • Benfey, P.N.1    Mitchell-Olds, T.2
  • 17
    • 0033967692 scopus 로고    scopus 로고
    • Introducing RefSeq and LocusLink: curated human genome resources at the NCBI
    • 10.1016/S0168-9525(99)01882-X, 10637631
    • Pruitt KD, Katz KS, Sicotte H, Maglott DR. Introducing RefSeq and LocusLink: curated human genome resources at the NCBI. Trends Genet 2000, 16(1):44-47. 10.1016/S0168-9525(99)01882-X, 10637631.
    • (2000) Trends Genet , vol.16 , Issue.1 , pp. 44-47
    • Pruitt, K.D.1    Katz, K.S.2    Sicotte, H.3    Maglott, D.R.4
  • 18
    • 0035162594 scopus 로고    scopus 로고
    • RefSeq and LocusLink: NCBI gene-centered resources
    • 10.1093/nar/29.1.137, 29787, 11125071
    • Pruitt KD, Maglott DR. RefSeq and LocusLink: NCBI gene-centered resources. Nucleic acids research 2001, 29(1):137-140. 10.1093/nar/29.1.137, 29787, 11125071.
    • (2001) Nucleic acids research , vol.29 , Issue.1 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 19
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic acids research 2005, (33 Database):D501-504.
    • (2005) Nucleic acids research , Issue.33 DATABASE
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 20
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt KD, Tatusova T, Maglott DR. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic acids research 2007, (35 Database):D61-65.
    • (2007) Nucleic acids research , Issue.35 DATABASE
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 21
    • 77955017577 scopus 로고    scopus 로고
    • Investigating the complex genetic architecture of ankle-brachial index, a measure of peripheral arterial disease, in non-Hispanic whites
    • 10.1186/1755-8794-1-16, 2412898, 18482449
    • Kardia SL, Greene MT, Boerwinkle E, Turner ST, Kullo IJ. Investigating the complex genetic architecture of ankle-brachial index, a measure of peripheral arterial disease, in non-Hispanic whites. BMC Med Genomics 2008, 1:16. 10.1186/1755-8794-1-16, 2412898, 18482449.
    • (2008) BMC Med Genomics , vol.1 , pp. 16
    • Kardia, S.L.1    Greene, M.T.2    Boerwinkle, E.3    Turner, S.T.4    Kullo, I.J.5
  • 22
    • 38349161044 scopus 로고    scopus 로고
    • Association of polymorphisms in NOS3 with the ankle-brachial index in hypertensive adults
    • 10.1016/j.atherosclerosis.2007.02.008, 2858046, 17367796
    • Kullo IJ, Greene MT, Boerwinkle E, Chu J, Turner ST, Kardia SL. Association of polymorphisms in NOS3 with the ankle-brachial index in hypertensive adults. Atherosclerosis 2008, 196(2):905-912. 10.1016/j.atherosclerosis.2007.02.008, 2858046, 17367796.
    • (2008) Atherosclerosis , vol.196 , Issue.2 , pp. 905-912
    • Kullo, I.J.1    Greene, M.T.2    Boerwinkle, E.3    Chu, J.4    Turner, S.T.5    Kardia, S.L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.