Streptomyces aomiensis sp. nov., isolated from a soil sample using the membrane-filter method

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 4, 2011, Pages 947-950

  Nagai, Aya ^a   Khan, Shams Tabrez ^a   Tamura, Tomohiko ^b   Takagi, Motoki ^a   Shin Ya, Kazuo ^c  

^a Japan Biological Informatics Consortium   (Japan)

^b NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^c NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; GENOMIC DNA; RIBOSOME RNA;

ARTICLE; BACTERIAL GROWTH; BACTERIUM IDENTIFICATION; GENE SEQUENCE; MEMBRANE FILTER; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SOIL ANALYSIS; STREPTOMYCES; STREPTOMYCES AOMIENSIS; STREPTOMYCES SCABRISPORUS;

BASE COMPOSITION; CLUSTER ANALYSIS; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FILTRATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; STREPTOMYCES; TOKYO;

POSIBACTERIA; STREPTOMYCES; STREPTOMYCES SCABRISPORUS;

EID: 79955405904     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.020719-0     Document Type: Article

References (18)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Brosius, J., Palmer, M. L., Kennedy, P. J. & Noller, H. F. (1978). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci U S A 75, 4801-4805.
3. Bull, A. T., Ward, A. C. & Goodfellow, M. (2000). Search and discovery strategies for biotechnology: the paradigm shift. Microbiol Mol Biol Rev 64, 573-606.
4. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Hayakawa, M. & Nonomura, H. (1987). Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J Ferment Technol 65, 501-509.
7. Hirsch, C. F. & Christensen, D. L. (1983). Novel method for selective isolation of actinomycetes. Appl Environ Microbiol 46, 925-929.
8. McVeigh, H. P., Divers, M., Warwick, S., Munro, J. & Embley, T. M. (1994). Exploration of actinomycete diversity using ribosomal RNA sequences. Biotechnologia 7-8, 253-260.
9. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
10. Minamisawa, K. (1990). Division of rhizobitoxine-producing and hydrogen-uptake positive strains of Bradyrhizobium japonicum by nifDKE sequence divergence. Plant Cell Physiol 31, 81-89.
11. Newman, D. J. & Hill, R. T. (2006). New drugs from marine microbes: the tide is turning. J Ind Microbiol Biotechnol 33, 539-544.
12. Ping, X., Takahashi, Y., Seino, A., Iwai, Y. & Ömura, S. (2004). Streptomyces scabrisporus sp. nov. Int J Syst Evol Microbiol 54, 577-581.
13. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
14. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
15. Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152-155.
16. Swofford, D. L. (2000). PAUP**: phylogenetic analysis using parsimony (and other methods), version 4. Sunderland, MA: Sinaur Associates.
17. Tamura, T., Nakagaito, Y., Nishii, T., Hasegawa, T., Stackebrandt, E. & Yokota, A. (1994). A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. Int J Syst Bacteriol 44, 193-203.
18. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.