Phylogenetic relationships within laticaudine sea snakes (Elapidae)

Molecular Phylogenetics and Evolution

Volumn 59, Issue 3, 2011, Pages 567-577

  Lane, Amanda ^a   Shine, Richard ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

Author keywords

Amphibious; Gene flow; Habitat effects; Laticaudine; Phylogeography; Snake; Venomous

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CLASSIFICATION; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SNAKE;

ANIMALS; DNA, MITOCHONDRIAL; HYDROPHIDAE; MOLECULAR SEQUENCE DATA; PHYLOGENY;

COLUBRINA; ELAPIDAE; HYDROPHIIDAE; LATICAUDA; LATICAUDA COLUBRINA; LATICAUDA LATICAUDATA; LATICAUDINAE; SERPENTES;

EID: 79955369276     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2011.03.005     Document Type: Article

References (80)

1. Avise J.C. Molecular Markers, Natural History, and Evolution 2004, Sinauer Associates, Sunderland, Massachusetts. second ed.
2. Balloux F., Lugon-Moulin N. The estimation of population differentiation with microsatellite markers. Mol. Ecol. 2002, 11:155-165.
3. Baker J.A., Cresko W.A., Foster S.A., Henis D.C. Life-history differentiation of benthic and limnetic ecotypes in a polytypic population of threespine stickleback (Gasterosteus aculeatus). Evol. Ecol. Res. 2005, 7:121-131.
4. Barton N.H. Founder effect speciation. Speciation and its Consequences 1989, 229-256. Sinauer Associates, Sunderland, Massachusetts. D. Otte, J. Endler (Eds.).
5. Bauer A.M. A geological basis for some herpetofaunal disjunctions in the southwest Pacific, with special reference to Vanuatu. Herpetol. J. 1988, 1:259-263.
6. Bauer A.M. Reptiles and the biogeographic interpretation of New Caledonia. Tuatara 1988, 30:39-50.
7. Bell K.L., Yeats D.K., Moritz C., Monteith G.B. Molecular phylogeny and biogeography of the dung beetle genus Temnoplectron Westwood (Scarabaeidae: Scarabaeinae) from Australia's wet tropics. Mol. Phylogent. Evol. 2004, 31:741-753.
8. Bonnet X., Inech I., Shine R. Terrestrial locomotion in sea snakes: the effects of sex and species on cliff-climbing ability in sea kraits (Serpentes, Elapidae, Laticauda). Biol. J. Linn. Soc. 2005, 85:433-441.
9. Brown, W.C., 1956. The distribution of terrestrial reptiles in the islands of the Pacific basin. In: Proc. Eighth Pacific Science Congress IIA, pp. 1479-1491.
10. Bucklin A., Wiebe P.H. Low mitochondrial diversity and small effective population sizes of the copepods Calanus finmarchicus and Nannocalanus minor: possible impact of climatic variation during recent glaciation. J. Hered. 1998, 89:383-392.
11. Chapple D.G., Keogh J.S., Hutchinson M.N. Substantial genetic substructuring in southeastern and alpine Australia revealed by molecular phylogeography of the Egernia whitii (Lacertilia: Scincidae) species group. Mol. Ecol. 2005, 14:1279-1292.
12. Cogger H.G., Heatwole H. Laticauda frontalis (de Vis, 1905) and Laticauda saintgironsi n.sp. from Vanuatu and New Caledonia (Serpentes: Elapidae: Laticaudinae) - a new lineage of sea kraits?. Rec. Aust. Mus. 2006, 58:245-256.
13. Elphick M.J., Shine R. Longterm effects of incubation temperatures on the morphology and locomotor performance of hatchling lizards. Biol. J. Linn. Soc. 1998, 63:429-447.
14. Estoup A., Angers B. Microsatellites and minisatellites for molecular ecology: theoretical and empirical considerations. Adv. Mol. Ecol. 1998, 306:55-86.
15. Forstner M.R.J., Davis S.K., Arévalo E. Support for the hypothesis of Anguimorph ancestry for the suborder Serpentes from phylogenetic analysis of mitochondrial DNA sequences. Mol. Phylogenet. Evol. 1995, 4:93-102.
16. Gibbons J.R.H. The biogeography and evolution of Pacific island reptiles and amphibians. The Biology and Australasian Frogs and Reptiles 1985, 125-142. Surrey Beatty and Sons, Chipping-Norton. G. Grigg, R. Shine, H. Ehmann (Eds.).
17. Hare M.P., Avise J.C. Molecular genetic analysis of a stepped multilocus cline in the American oyster (Crassostrea virginica). Evolution 1996, 50:2305-2315.
18. Hardy O.J., Vekemans X. SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Mol. Ecol. Notes 2002, 2:618-620.
19. Hasegawa M., Kishino H., Yano T.A. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 1985, 22:160-174.
20. Hauswaldt J.S., Glenn T.C. Microsatellite DNA loci from the diamondback terrapin (Malaclemys terrapin). Mol. Ecol. Notes 2003, 3:174-176.
21. Heatwole H. Sea Snakes 1999, UNSW Press, Sydney. second ed.
22. Heatwole H., Busack S., Cogger H. Geographic variation in sea kraits of the Laticauda colubrina complex (Serpentes: Elapidae: Hydrophiinae: Laticaudini). Herpetol. Monogr. 2005, 19:1-136.
23. Heads M. Panbiogeography of New Caledonia, south-west Pacific: basal angiosperms on basement terranes, ultramafic endemics inherited from volcanic island arcs and old taxa endemic to young islands. J. Biogeogr. 2008, 35:2153-2175.
24. Hellberg M.E. Relationships between inferred levels of gene flow and geographic distance in a philopatric coral, Balanophyllia elegans. Evolution 1994, 48:1829-1854.
25. Hey J., Nielsen R. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 2004, 167:747-760.
26. Hey J., Nielsen R. Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proc. Natl. Acad. Sci. USA 2007, 104:2785-2790.
27. Hudson R.R., Kreitman M., Aguade M. A test of neutral molecular evolution based on nucleotide data. Genetics 1987, 116:153-159.
28. Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
29. Hugall A.F., Foster R., Hutchinson M., Lee M.S.Y. Phylogeny of Australasian agamid lizards based on nuclear and mitochondrial genes: implications for morphological evolution and biogeography. Biol. J. Linn. Soc. 2008, 93:343-358.
30. Hugall A.F., Lee M.S.Y. Molecular claims of Gondwanan age for Australian agamid lizards are untenable. Mol. Biol. Evol. 2004, 21:2102-2110.
31. Jensen J.L., Bohonak A.J., Kelley S.T. Isolation by distance, web service. BMC Genet. 2005, 6:13.
32. Keppel G., Lowe A.J., Possingham H.P. Changing perspectives on the biogeography of the tropical south Pacific: influences of dispersal, vicariance and extinction. J. Biogeogr. 2009, 36:1035-1054.
33. Keogh J.S. Molecular phylogeny of elapid snakes and a consideration of their biogeographic history. Biol. J. Linn. Soc. 1998, 63:177-203.
34. Keogh J.S., Scott A.W., Fitzgerald M., Shine R. Molecular phylogeny of the Australian venomous snake genus Hoplocephalus (Serpentes, Elapidae) and conservation genetics of the threatened H. stephensii. Conserv. Genet. 2003, 4:57-65.
35. Kimura M., Ohta T. Stepwise mutation model and distribution of allelic frequencies in a finite population. Proc. Natl. Acad. Sci. USA 1978, 75:2868-2872.
36. Knowles L.L., Maddison W.P. Statistical phylogeography. Mol. Ecol. 2002, 12:2623-2635.
37. Knowlton N. Sibling species in the sea. Annu. Rev. Ecol. Syst. 1993, 24:189-216.
38. Kroenke L.E. Plate tectonic development of the western and southwestern Pacific: mesozoic to the present. The Origin and Evolution of Pacific Island Biotas, New Guinea to Eastern Polynesia: Patterns and Processes 1996, 19-34. SPB Academic Publishing, Amsterdam. A. Keast, S.E. Miller (Eds.).
39. Lane A.M., Oldroyd B.P., Shine R. Microsatellite loci for laticaudine sea kraits. Mol. Ecol. Resour. 2008, 8:1161-1163.
40. Lavery S., Moritz C., Fielder D.R. Indo-Pacific population structure and evolutionary history of the coconut crab Birgus latro. Mol. Ecol. 1996, 5:557-570.
41. Lessios H.A., Kane J., Robertson D.R. Phylogeography of the pantropical sea urchin Tripneustes: contrasting patterns of population structure between oceans. Evolution 2003, 57:2026-2036.
42. Lessios H.A., Kessing B.D., Pearse J.S. Population structure and speciation in tropical seas: global phylogeography of the sea urchin Diadema. Evolution 2001, 55:955-975.
43. Lessios H.A., Kessing B.D., Robertson D.R. Massive gene flow across the world's most potent marine biogeographic barrier. Proc. Roy. Soc. B 1998, 265:583-588.
44. Lukoschek V., Waycott M., Keogh S. Relative information content of polymorphic microsatellites and mitochondrial DNA for inferring dispersal and population genetic structure in the olive sea snake, Aipysurus laevis. Mol. Ecol. 2008, 17:3062-3077.
45. Maddison D.R., Maddison W.P. MacClade 4: Analysis of Phylogeny and Character Evolution 2000, Sinauer Associates, Sunderland, Massachusetts.
46. McCarthy C.J. Relationships of the laticaudine sea snakes (Serpentes: Elapidae: Laticaudinae). Bull. Brit. Mus. Nat. Hist. 1986, 50:127-161.
47. McDonald J.H., Kreitman M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 1991, 351:652-654.
48. Norris R.D. Pelagic species diversity, biogeography and evolution. Paleobiology 2000, 26:236-258.
49. Nylander J.A.A. MrModeltest v2. Program Distributed by the Author 2004, Evolutionary Biology Centre, Uppsala University, Sweden.
50. Palumbi S.R. Molecular biogeography of the Pacific. Coral Reefs 1997, 15:S47-52.
51. Palumbi S.R., Grabowsky G., Duda T., Geyer L., Tachino N. Speciation and population genetic structure in tropical Pacific sea urchins. Evolution 1997, 51:1506-1517.
52. Posada D., Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
53. Rabosky D.L., Donnellan S.C., Talaba A.L., Lovette I.J. Exceptional among-lineage variation in diversification rates during the radiation of Australia's most diverse vertebrate clade. Proc. Roy. Soc. B 2007, 274:2915-2923.
54. Raymond M., Rousset F. An exact test for population differentiation. Evolution 1995, 49:1280-1283.
55. Rice W.R., Hostert E.E. Laboratory experiments on speciation: what have we learned in 40 years?. Evolution 1993, 47:1637-1653.
56. Rousset F. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 1997, 145:1219-1228.
57. Rozas J., Sanchez-DelBarrio J.C., Messeguer X., Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003, 19:2496-2497.
58. Saint Girons H. Notes on the ecology and population structure of the Laticaudinae (Serpentes, Hydrophiidae) in New Caledonia. La Terre Vie 1964, 2:185-214.
59. Sanders K.L., Lee M.S.Y. Molecular evidence for a rapid late-Miocene radiation of Australasian venomous snakes (Elapidae, Colubroidea). Mol. Phylogenet. Evol. 2008, 46:1165-1173.
60. Sanders K.L., Lee M.S.Y., Leys R., Foster R., Keogh J.S. Molecular phylogeny and divergence dates for Australasian elapids and sea snakes (Hydrophiinae): evidence from seven genes for rapid evolutionary radiations. J. Evol. Biol. 2008, 21:682-695.
61. Scanlon J.D., Lee M.S.Y. Phylogeny of Australasian venomous snakes (Colubroidea, Elapidae, Hydrophiinae) based on phenotypic and molecular evidence. Zool. Scripta 2004, 33:335-366.
62. Selkoe K.A., Henzler C.M., Gaines S.D. Seascape genetics and the spatial ecology of marine populations. Fish Fish. 2008, 9:363-377.
63. Shetty S., Shine R. Activity patterns of yellow-lipped sea kraits (Laticauda colubrina) on a Fijian island. Copeia 2002, 2002:77-85.
64. Shine R., Cogger H.G., Reed R.R., Shetty S., Bonnet X. Aquatic and terrestrial locomotor speeds of amphibious sea-snakes (Serpentes, Laticaudidae). J. Zool. 2003, 259:261-268.
65. Siegel D.A., Mitarai S., Costello C.J., Gaines S.D., Kendell B.E., Warner R.R., Winters K.B. The stochastic nature of larval connectivity among nearshore marine populations. Proc. Natl. Acad. Sci. Biol. 2008, 105:8974-8979.
66. Slatkin M. Isolation by distance in equilibrium and nonequilibrium populations. Evolution 1993, 47:264-279.
67. Slowinski J.B., Keogh J.S. Phylogenetic relationships of elapid snakes based on cytochrome b mtDNA sequences. Mol. Phylogenet. Evol. 2000, 15:157-164.
68. Stejneger L. Herpetology of Japan and adjacent territory. US Natl. Mus. Bull. 1907, 58:1-557.
69. *and Other Methods). Beta Version 4.0b4a. Sinauer Associates, Sunderland, Massachusetts.
70. Taberlet P., Fumagalli L., Wust-Saucy A.G., Cosson J.F. Comparative phylogeography and postglacial colonization routes in Europe. Mol. Ecol. 1998, 7:453-464.
71. Talley L.D., Fryer G., Lumpkin R. Physical oceanography of the tropical Pacific. Geography of the Pacific Islands 1998, 19-32. Bess Press, Honolulu. M. Rapaport (Ed.).
72. Turelli M., Barton N.H., Coyne J.A. Theory and speciation. Trends Ecol. Evol. 2001, 16:330-343.
73. Walsh P.S., Metzger D.A., Higuchi R. Chelex-100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 1991, 10:506-513.
74. Waples R.S. Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species. J. Hered. 1998, 89:438-450.
75. Ward R.D., Woodwark M., Skibinski D.O.F. A comparison of genetic diversity levels in marine, freshwater and anadromous fishes. J. Fish. Biol. 1994, 44:213-232.
76. Williams M., Dunkerley D., De Deckker P., Kershaw P., Chappell J. Quaternary Environments 1998, Oxford University Press, Oxford. second ed.
77. Wuster W., Dumbrell A.J., Hay C., Pook C.E., Williams D.J., Fry B.G. Snakes across the Strait: trans-Torresian phylogeographic relationships in three genera of Australasian snakes (Serpentes: Elapidae: Acanthophis, Oxyuranus, and Pseudechis). Mol. Phylogenet. Evol. 2005, 34:1-14.
78. Xia J.H., Huang J.H., Gong J.B., Jiang S.G. Significant population structure of yellowfin seabream Acanthopagrus latus in China. J. Fish Biol. 2008, 73:1979-1992.
79. Zamudio K.R., Greene H.W. Phylogeography of the bushmaster (Lachesis muta: Viperidae): implications for neotropical biogeography, systematics, and conservation. Biol. J. Linn. Soc. 1997, 62:421-442.
80. Zhang D.X., Hewitt G.M. Nuclear integrations: challenges for mitochondrial DNA markers. Trends Ecol. Evol. 1996, 11:247-251.