Identification of a GH62 α-l-arabinofuranosidase specific for arabinoxylan produced by Penicillium chrysogenum

Applied Microbiology and Biotechnology

Volumn 90, Issue 1, 2011, Pages 137-146

  Sakamoto, Tatsuji ^a   Ogura, Atsuhiro ^a   Inui, Misako ^a   Tokuda, Sayaka ^a   Hosokawa, Sachiko ^a   Ihara, Hideshi ^a   Kasai, Naoya ^a  

^a Osaka Prefecture University   (Japan)

Author keywords

l Arabinofuranosidase; Arabinoxylan arabinofuranohydrolase; Glycoside hydrolase family 62; Penicillium chrysogenum; XlnR binding site

Indexed keywords

AMINO ACID SEQUENCE; ARABINANS; ARABINOXYLAN ARABINOFURANOHYDROLASE; ARABINOXYLANS; ASPERGILLUS NIGER; ASPERGILLUS TUBINGENSIS; CDNA ENCODING; CULTURE FILTRATE; CULTURE MEDIUM; D-XYLOSE; GENES ENCODING; GLYCOSIDE HYDROLASE FAMILY 62; GLYCOSIDE HYDROLASES; IN-VITRO; N-TERMINAL AMINO ACID SEQUENCE; NATIVE ENZYMES; NMR ANALYSIS; PENICILLIUM CHRYSOGENUM; SEMI-QUANTITATIVE RT-PCR; SEQUENCE ANALYSIS; SIDE CHAINS; TRANSCRIPTIONAL ACTIVATORS; UPSTREAM REGION; XLNR BINDING SITE; XYLANOLYTIC ENZYMES; XYLOSE RESIDUES;

AMINO ACIDS; ASPERGILLUS; BINDING SITES; BIOCHEMISTRY; CLONING; ENCODING (SYMBOLS); ENZYMES; ESCHERICHIA COLI; GENE ENCODING; GENE EXPRESSION; HYDROLASES; SUGAR BEETS; XYLOSE;

ENZYME ACTIVITY;

ALPHA ARABINOFURANOSIDASE; ARABINOXYLAN; ARABINOXYLAN ARABINOFURANOHYDROLASE; COMPLEMENTARY DNA; GLYCOSIDASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR X1NR; UNCLASSIFIED DRUG; XYLOSE;

AMINO ACID; BACTERIUM; CHEMICAL BINDING; CLONE; ENZYME ACTIVITY; FUNGUS; GENE EXPRESSION; POLYMERASE CHAIN REACTION; REAL TIME; RECOMBINATION; SUGAR BEET;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; ASPERGILLUS NIGER; ASPERGILLUS PARASITICUS; ASPERGILLUS TUBINGENSIS; BINDING SITE; CONTROLLED STUDY; ENZYME PURIFICATION; ESCHERICHIA COLI; FUNGAL GENE; GENE OVEREXPRESSION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PENICILLIUM CHRYSOGENUM; PROTEIN ANALYSIS; PROTON NUCLEAR MAGNETIC RESONANCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SUGAR BEET;

BINDING SITES; CLONING, MOLECULAR; FUNGAL PROTEINS; GLYCOSIDE HYDROLASES; MOLECULAR SEQUENCE DATA; PENICILLIUM CHRYSOGENUM; SUBSTRATE SPECIFICITY; XYLANS;

ASPERGILLUS NIGER; ASPERGILLUS SOJAE; ASPERGILLUS TUBINGENSIS; BETA VULGARIS SUBSP. VULGARIS; ESCHERICHIA COLI; PENICILLIUM CHRYSOGENUM;

EID: 79954938986     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-2988-2     Document Type: Article

References (34)

1. G Beldman HA Schols SM Pitson MJF Searle-van Leeuwen AGJ Voragen 1997 Arabinans and arabinan degrading enzymes Adv Macromol Carbohydr Res 1 1 64 1:CAS:528:DyaK1cXmtlOgsbw%3D
2. TM Bourgois V Van Craeyveld S Van Campenhout CM Courtin JA Delcour J Robben G Volckaert 2007 Recombinant expression and characterization of XynD from Bacillus subtilis subsp. subtilis ATCC 6051: a GH 43 arabinoxylan arabinofuranohydrolase Appl Microbiol Biotechnol 75 1309 1317 10.1007/s00253-007-0956-2 1:CAS:528:DC%2BD2sXmvVKntLw%3D (Pubitemid 46976671)
3. R Chávez P Bull J Eyzaguirre 2006 The xylanolytic enzyme system from the genus Penicillium J Biotechnol 123 413 433 10.1016/j.jbiotec.2005.12. 036
4. H Ferré A Broberg J∅ Duus KK Thomsen 2000 A novel type of arabinoxylan arabinofuranohydrolase isolated from germinated barley-analysis of substrate preference and specificity by nano-probe NMR Eur J Biochem 267 6633 6641 10.1046/j.1432-1327.2000.01758.x
5. MMC Gielkens J Visser LH De Graaff 1997 Arabinoxylan degradation by fungi: characterization of the arabinoxylan-arabinofuranohydrolase encoding genes from Aspergillus niger and Aspergillus tubingensis Curr Genet 31 22 29 10.1007/s002940050172 1:CAS:528:DyaK2sXht1yhsbc%3D (Pubitemid 27077527)
6. A Kaji K Tagawa 1970 Purification, crystalization and amino acid composition of α-l-arabinofuranosidase from Aspergillus niger Biochim Biophys Acta 207 456 464 1:CAS:528:DyaE3cXks1ars7s%3D
7. I Kimura N Yoshioka Y Kimura S Tajima 2000 Cloning, sequencing and expression of an α-l-arabinofuranosidase from Aspergillus sojae J Biosci Bioeng 89 262 266 10.1016/S1389-1723(00)88830-1 1:CAS:528:DC%2BD3cXjsFent7k%3D (Pubitemid 30225086)
8. K Komae A Kaji M Sato 1982 An α-l-arabinofuranosidase from Streptomyces purpurascens IFO 3389 Agric Biol Chem 46 1899 1905 1:CAS:528:DyaL38XltVKjsLY%3D
9. FJM Kormelink MJF Searle-Van Leeuwen TM Wood AGJ Voragen 1991 (1, 4)-β-d-Arabinoxylan arabinofuranohydrolase: a novel enzyme in the bioconversion of arabinoxylan Appl Microbiol Biotechnol 35 231 232 1:CAS:528:DyaK38XhtVWmtbg%3D
10. FJM Kormelink MJF Searle-Van Leeuwen TM Wood AGJ Voragen 1991 Purification and characterization of an (1, 4)-β-d-arabinoxylan arabinofuranohydrolase from Aspergillus awamori Appl Microbiol Biotechnol 35 753 758 1:CAS:528:DyaK3MXmslCisL8%3D
11. FJM Kormelink H Gruppen AGJ Voragen 1993 Mode of action of (1-4)-β-d-arabinoxylan arabinofuranohydrolase (AXH) and α-l-arabinofuranosidases on alkali-extractable wheat-flour arabinoxylan Carbohydr Res 249 345 353 10.1016/0008-6215(93)84099-R 1:CAS:528: DyaK2cXhtVSgsLc%3D (Pubitemid 23327456)
12. UK Laemmli 1970 Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 227 680 685 10.1038/227680a0 1:CAS:528:DC%2BD3MXlsFags7s%3D
13. OH Lowry NJ Rosebrough AL Farr RJ Randall 1951 Protein measurement with the Folin phenol reagent J Biol Chem 193 265 275 1:CAS:528:DyaG38XhsVyrsw%3D%3D
14. A Matsushika H Inoue T Kodaki S Sawayama 2009 Ethanol production from xylose in engineered Saccharomyces cerevisiae strains: current state and perspectives Appl Microbiol Biotechnol 84 37 53 10.1007/s00253-009-2101-x 1:CAS:528:DC%2BD1MXovVOhsL8%3D
15. MT Numan NB Bhosle 2006 α-l-Arabinofuranosidases: the potential applications in biotechnology J Ind Microbiol Biotechnol 33 247 260 10.1007/s10295-005-0072-1 1:CAS:528:DC%2BD28XitV2qtL8%3D (Pubitemid 43348691)
16. AKMS Rahman K Kato S Kawai K Takamizawa 2003 Substrate specificity of the α-l-arabinofuranosidase from Rhizomucor pusillus HHT-1 Carbohydr Res 338 1469 1476 10.1016/S0008-6215(03)00203-9 1:CAS:528:DC%2BD3sXkvVeisLg%3D (Pubitemid 36776299)
17. FM Rombouts AGJ Voragen MF Searle-van Leeuwen CCJM Geraerds HA Schols W Pilnik 1988 The arabinanases of Aspergillus niger-purification and characterisation of two α-l-arabinofuranosidases and an endo-1, 5-α-l-arabinanase Carbohydr Polym 9 25 47 10.1016/0144-8617(88)90075-6 1:CAS:528:DyaL1cXmtVOhtLo%3D
18. BC Saha 2000 α-l-Arabinofuranosidases: biochemistry, molecular biology and application in biotechnology Biotechnol Adv 18 403 423 10.1016/S0734-9750(00)00044-6 1:CAS:528:DC%2BD3cXmtlKjsrk%3D
19. T Sakamoto H Kawasaki 2003 Purification and properties of two type-B α-l-arabinofuranosidases produced by Penicillium chrysogenum Biochim Biophys Acta (General subjects) 1621 204 210 10.1016/S0304-4165(03)00058-8 1:CAS:528:DC%2BD3sXjtlSks7w%3D (Pubitemid 36515100)
20. T Sakamoto JF Thibault 2001 An exo-arabinanase of Penicillium chrysogenum able to release arabinobiose from α-1, 5-l-arabinan Appl Environ Microbiol 67 3319 3321 10.1128/AEM.67.7.3319-3321.2001 1:CAS:528: DC%2BD3MXkvFSms7g%3D (Pubitemid 33644811)
21. T Sakamoto M Yamada H Kawasaki T Sakai 1997 Molecular cloning and nucleotide sequence of an endo-1, 5-α-l-arabinase gene from Bacillus subtilis Eur J Biochem 245 708 714 10.1111/j.1432-1033.1997.t01-1-00708.x 1:CAS:528:DyaK2sXjt12hs78%3D (Pubitemid 27225442)
22. T Sakamoto H Ihara S Kozaki H Kawasaki 2003 A cold-adapted endo-arabinanase from Penicillium chrysogenum Biochim Biophys Acta (General subjects) 1624 70 75 10.1016/j.bbagen.2003.09.011 1:CAS:528:DC%2BD3sXpt1ersrg%3D (Pubitemid 37474115)
23. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor
24. F Sanger S Nicklen AR Coulson 1977 DNA sequencing with chain-terminating inhibitors Proc Natl Acad Sci USA 74 5463 5467 10.1073/pnas.74.12.5463 1:CAS:528:DyaE1cXhtlaru7Y%3D
25. M Somogyi 1952 Notes on sugar determination J Biol Chem 195 19 23 1:CAS:528:DyaG38XivFegsw%3D%3D
26. HR Sørensen CT Jørgensen CH Hansen CI Jørgensen S Pedersen AS Meyer 2006 A novel GH43 α-l-arabinofuranosidase from Humicola insolens: mode of action and synergy with GH51 α-l-arabinofuranosidases on wheat arabinoxylan Appl Microbiol Biotechnol 73 850 861 10.1007/s00253-006- 0543-y (Pubitemid 44834315)
27. MA Van den Berg R Albang K Albermann JH Badger JM Daran AJ Driessen C Garcia-Estrada ND Fedorova DM Harris WH Heijne V Joardar JA Kiel A Kovalchuk JF Martín WC Nierman JG Nijland JT Pronk JA Roubos IJ van der Klei NN van Peij M Veenhuis H von Döhren C Wagner J Wortman RA Bovenberg 2008 Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum Nat Biotechnol 26 1161 1168 10.1038/nbt.1498 1:CAS:528:DC%2BD1cXhtVGltLnK
28. LAM van den Broek RM Lloyd G Beldman JC Verdoes BV McCleary AGJ Voragen 2005 Cloning and characterization of arabinoxylan arabinofuranohydrolase-D3 (AXHd3) from Bifidobacterium adolescentis DSM20083 Appl Microbiol Biotechnol 67 641 647 10.1007/s00253-004-1850-9 (Pubitemid 40898082)
29. KMJ Van Laere G Beldman AGJ Voragen 1997 A new arabinofuranohydrolase from Bifidobacterium adolescentis able to remove arabinosyl residues from double-substituted xylose units in arabinoxylan Appl Microbiol Biotechnol 47 231 235 10.1007/s002530050918 (Pubitemid 27173435)
30. KMJ Van Laere CHL Voragen T Kroef LAM Van den Broek G Beldman AGJ Voragen 1999 Purification and mode of action of two different arabinoxylan arabinofuranohydrolases from Bifidobacterium adolescentis DSM 20083 Appl Microbiol Biotechnol 51 606 613 10.1007/s002530051439 (Pubitemid 29266312)
31. AJA van Maris DA Abbott E Bellissimi J van den Brink M Kuyper MAH Luttik HW Wisselink WA Scheffers JP van Dijken JT Pronk 2006 Alcoholic fermentation of carbon sources in biomass hydrolysates by Saccharomyces cerevisiae: current status Antonie Van Leeuwenhoek 90 391 418 10.1007/s10482-006-9085-7 1:CAS:528:DC%2BD28XhtFGqtbfK (Pubitemid 44688265)
32. NNME van Peij J Visser LH de Graaff 1998 Isolation and analysis of xlnR, encoding a transcriptional activator co-ordinating xylanolytic expression in Aspergillus niger Mol Microbiol 27 131 142 10.1046/j.1365-2958.1998.00666.x (Pubitemid 28022583)
33. NNME van Peij MMC Gielkens RP de Vries J Visser LH de Graaff 1998 The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger Appl Environ Microbiol 64 3615 3619 (Pubitemid 28462948)
34. L Weinstein P Albersheim 1979 Structure of plant cell walls. IX. Purification and partial characterization of a wall-degrading endo-arabanase and an arabinosidase from Bacillus subtilis Plant Physiol 63 425 432 10.1104/pp.63.3.425 1:CAS:528:DyaE1MXhvF2nsrg%3D