Low seasonal variability in community composition of sediment bacteria in large and shallow lake

Environmental Microbiology Reports

Volumn 3, Issue 2, 2011, Pages 270-277

  Tšertova, Natalja ^a   Kisand, Anu ^b   Tammert, Helen ^a,b   Kisand, Veljo ^a,b  

^a UNIVERSITY OF TARTU   (Estonia)

^b ESTONIAN UNIVERSITY OF LIFE SCIENCES   (Estonia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; PROTEOBACTERIA;

EID: 79954618353     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/j.1758-2229.2010.00221.x     Document Type: Article

References (31)

1. Bloesch, J. (1995) Mechanisms, measurement and importance of sediment resuspension in lakes. Mar Freshw Res 46: 295-304.
2. Böer, S., Hedtkamp, S., Van Beusekom, J., Fuhrman, J., Boetius, A., and Ramette, A. (2009) Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands. ISME J 3: 780-791.
3. Briée, C., Moreira, D., and López-García, P. (2007) Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond. Res Microbiol 158: 213-227.
4. DeSantis, T., Hugenholtz, P., Keller, K., Brodie, E., Larsen, N., Piceno, Y., etal. (2006) NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res 34: W394-W399.
5. Elshahed, M., Senko, J., Najar, F., Kenton, S., Roe, B., Dewers, T., etal. (2003) Bacterial diversity and sulfur cycling in a mesophilic sulfide-rich spring. Appl Environ Microbiol 69: 5609-5621.
6. Franco, M., De Mesel, I., Demba Diallo, M., Van Der Gucht, K., Van Gansbeke, D., Van Rijswijk, P., etal. (2007) Effect of phytoplankton bloom deposition on benthic bacterial communities in two contrasting sediments in the southern North Sea. Aquat Microb Ecol 48: 241-254.
7. Gich, F., Garcia-Gil, J., and Overmann, J. (2002) Previously unknown and phylogenetically diverse members of the green nonsulfur bacteria are indigenous to freshwater lakes. Arch Microbiol 177: 1-10.
8. Gillies, J.E., Kuehn, K.A., Francoeur, S.N., and Neely, R.K. (2006) Application of the [3H]leucine incorporation technique for quantification of bacterial secondary production associated with decaying wetland plant litter. Appl Environ Microbiol 72: 5948-5956.
9. Gray, N., Howarth, R., Pickup, R., Jones, J., and Head, I. (1999) Substrate uptake by uncultured bacteria from the genus Achromatium determined by microautoradiography. Appl Environ Microbiol 65: 5100-5106.
10. Haglund, A., Lantz, P., Törnblom, E., and Tranvik, L. (2003) Depth distribution of active bacteria and bacterial activity in lake sediment. FEMS Microbiol Ecol 46: 31-38.
11. Hewson, I., Jacobson-Meyers, M., and Fuhrman, J. (2007) Diversity and biogeography of bacterial assemblages in surface sediments across the San Pedro Basin, Southern California Borderlands. Environ Microbiol 9: 923-933.
12. Huber, T., Faulkner, G., and Hugenholtz, P. (2004) Bellerophon: A program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319.
13. Järvet, A. (2004) Influence of hydrological factors and human impact on the ecological state of shallow Lake Võrtsjärv in Estonia. PhD Thesis. Tartu, Estonia: Institute of Geography, Faculty of Biology and Geography, University of Tartu.
14. Karr, E.A., Sattley, W.M., Rice, M.R., Jung, D.O., Madigan, M.T., and Achenbach, L.A. (2005) Diversity and distribution of sulfate-reducing bacteria in Permanently Frozen Lake Fryxell, McMurdo Dry Valleys, Antarctica. Appl Environ Microbiol 71: 6353-6359.
15. Kassen, R., Buckling, A., Bell, G., and Ralney, P. (2000) Diversity peaks at intermediate productivity in a laboratory microcosm. Nature 406: 508-512.
16. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar etal. (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
17. Nealson, K.H. (1997) Sediment bacteria: who's there, what are they doing, and what's new? Annu Rev Earth Planet Sci 25: 403-434.
18. Niemistö, J., and Horppila, J. (2007) The contribution of ice cover to sediment resuspension in a shallow temperate lake: possible effects of climate change on internal nutrient loading. J Environ Qual 36: 1318-1323.
19. Nõges, P., and Nõges, T. (2010) Climate-related changes of phytoplankton seasonality in large shallow Lake Võrtsjärv, Estonia. Aquat Ecosyst Health Manag 13: 154-163.
20. Nõges, T., Järvet, A., Kisand, A., Laugaste, R., Loigu, E., Skakalski, B., and Nõges, P. (2007) Reaction of large and shallow lakes Peipsi and Võrtsjärv to the changes of nutrient loading. Hydrobiologia 584: 253-264.
21. Novitsky, J.A. (1987) Microbial growth rates and biomass production in a marine sediment: evidence for a very active but mostly nongrowing community. Appl Environ Microbiol 53: 2368-2372.
22. Pester, M., Friedrich, M., Schink, B., and Brune, A. (2004) pmoA-Based analysis of methanotrophs in a, littoral lake sediment reveals a diverse and stable community in a dynamic environment. Appl Environ Microbiol 70: 3138-3142.
23. Sala, M., and Güde, H. (2006) Seasonal dynamics of pelagic and benthic (littoral and profundal) bacterial abundances and activities in a deep prealpine lake (L. Constance). Arch Hydrobiol 167: 351-369.
24. Sass, A., Eschemann, A., Kuhl, M., Thar, R., Sass, H., and Cypionka, H. (2002) Growth and chemosensory behavior of sulfate-reducing bacteria in oxygen-sulfide gradients. FEMS Microbiol Ecol 40: 47-54.
25. Schwarz, J., Lueders, T., Eckert, W., and Conrad, R. (2007) Identification of acetate-utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA. Environ Microbiol 9: 223-237.
26. Steger, G. (1994) Thermal denaturation of double-stranded nucleic acids: prediction of temperatures critical for gradient gel electrophoresis and polymerase chain reaction. Nucleic Acids Res 22: 2760-2768.
27. Stein, L., La Duc, M., Grund, T., and Nealson, K. (2001) Bacterial and archaeal populations associated with freshwater ferromanganous micronodules and sediments. Environ Microbiol 3: 10-18.
28. Tang, X., Gao, G., Qin, B., Zhu, L., Chao, J., Wang, J., and Yang, G. (2009) Characterization of bacterial communities associated with organic aggregates in a large, shallow, eutrophic freshwater Lake (Lake Taihu, China). Microb Ecol 58: 307-322.
29. Tang, X., Gao, G., Chao, J., Wang, X., Zhu, G., and Qin, B. (2010) Dynamics of organic-aggregate-associated bacterial communities and related environmental factors-in Lake Taihu, a large eutrophic shallow lake in China. Limnol Oceanogr 55: 469-480.
30. Tuvikene, L., Nõges, P., Nõges, T., and Thurston, R. (2002) Hypoxia/anoxia in Lake Võrtsjärv, Estonia. In Proceedings of the sixth international symposium on fish physiology, toxicology, and water quality, la paz b.c.s. Mexico, January 22-26, 2001: Athens, Georgia, USA: U.S. environmental protection agency, ecosystems research division, 2002, pp. 163-170.
31. Ye, W., Liu, X., Lin, S., Tan, J., Pan, J., Li, D., and Yang, H. (2009) The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu. FEMS Microbiol Ecol 70: 263-276.