Development and application of an efficient virus-induced gene silencing system in Nicotiana tabacum using geminivirus alphasatellite

Journal of Zhejiang University: Science B

Volumn 12, Issue 2, 2011, Pages 83-92

  Huang, Chang Jun ^a   Zhang, Tong ^a   Li, Fang Fang ^a   Zhang, Xin Yue ^a   Zhou, Xue Ping ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

Alphasatellite; Geminivirus; Nicotiana tabacum; Virus induced gene silencing

Indexed keywords

2MDNA1; BETA GLUCURONIDASE; DNA; ENZYME; SULPHUR DESATURASE; TBCSV; UNCLASSIFIED DRUG; VIRUS VECTOR;

ARTICLE; DNA EXTRACTION; FLOWER; GEMINIVIRUS; GENE REPRESSION; GENE SILENCING; LIFESPAN; NONHUMAN; PHENOTYPE; PLANT GROWTH; PLANT LEAF; PLANT ROOT; PLANT STEM; PRIORITY JOURNAL; SEEDLING; TOBACCO; VIRUS RESISTANCE;

BASE SEQUENCE; DNA PRIMERS; GEMINIVIRIDAE; GENE TRANSFER TECHNIQUES; GENES, PLANT; GENETIC VECTORS; GLUCURONIDASE; PLANT DISEASES; PLANTS, GENETICALLY MODIFIED; PLASMIDS; RNA INTERFERENCE; SATELLITE VIRUSES; TEMPERATURE; TOBACCO; TOBACCO MOSAIC VIRUS;

GEMINIVIRIDAE; NICOTIANA TABACUM; TOBACCO CURLY SHOOT VIRUS; TOBACCO MOSAIC VIRUS;

EID: 79954456347     PISSN: 16731581     EISSN: 18621783     Source Type: Journal    
DOI: 10.1631/jzus.B1000157     Document Type: Article

References (42)

1. A. Becker M. Lange 2010 VIGS-genomics goes functional Trends Plant. Sci. 15 1 1 4 19819180 10.1016/j.tplants.2009.09.002 1:CAS:528:DC%2BC3cXjslalsA%3D%3D
2. R.W. Briddon J. Stanley 2006 Subviral agents associated with plant single-stranded DNA viruses Virology 344 1 198 210 16364750 10.1016/j.virol. 2005.09.042 1:CAS:528:DC%2BD2MXhtlCqtb3I (Pubitemid 41814462)
3. T.M. Burch-Smith J.C. Anderson G.B. Martin S.P. Dinesh-Kumar 2004 Applications and advantages of virus-induced gene silencing for gene function studies in plants Plant J. 39 5 734 746 15315635 10.1111/j.1365-313X.2004.02158. x 1:CAS:528:DC%2BD2cXos1ylt7o%3D (Pubitemid 39218781)
4. S.A. Bustin V. Benes J.A. Garson J. Hellemans J. Huggett M. Kubista R. Mueller T. Nolan M.W. Pfaffl G.L. Shipley, et al. 2009 The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments Clin. Chem. 55 4 611 622 19246619 10.1373/clinchem.2008.112797 1:CAS:528:DC%2BD1MXktVWqs7g%3D
5. X.Z. Cai C.C. Wang Y.P. Xu Q.F. Xu Z. Zheng X.P. Zhou 2007 Efficient gene silencing induction in tomato by a viral satellite DNA vector Virus Res. 125 2 169 175 17289205 10.1016/j.virusres.2006.12.016 1:CAS:528:DC%2BD2sXksFWmtb8%3D (Pubitemid 46589678)
6. J. Carrillo-Tripp H. Shimada-Beltran R. Rivera-Bustamante 2006 Use of geminiviral vectors for functional genomics Curr. Opin. Plant Biol. 9 2 209 215 16480918 10.1016/j.pbi.2006.01.012 1:CAS:528:DC%2BD28XhvVWruro%3D (Pubitemid 43289319)
7. P. Chellappan R. Vanitharani F. Ogbe C.M. Fauquet 2005 Effect of temperature on geminivirus-induced RNA silencing in plants Plant Physiol. 138 4 1828 1841 16040661 10.1104/pp.105.066563 1:CAS:528:DC%2BD2MXps12mu7c%3D (Pubitemid 43733531)
8. C. Cogoni G. Macino 1997 Isolation of quelling-defective (qde) mutants impaired in posttranscriptional transgeneinduced gene silencing in Neurospora crassa PNAS 94 19 10233 10238 9294193 10.1073/pnas.94.19.10233 1:CAS:528:DyaK2sXmt1Gjs7s%3D (Pubitemid 27407024)
9. C. Cogoni G. Macino 2000 Post-transcriptional gene silencing across kingdoms Curr. Opin. Genet. Dev. 10 6 638 643 11088014 10.1016/S0959-437X(00) 00134-9 1:CAS:528:DC%2BD3cXovFansrc%3D
10. X.F. Cui X.R. Tao Y. Xie C.M. Fauquet X.P. Zhou 2004 A DNAβ associated with Tomato yellow leaf curl China virus is required for symptom induction J. Virol. 78 24 13966 13974 15564504 10.1128/JVI.78.24.13966-13974. 2004 1:CAS:528:DC%2BD2cXhtFSisL3N (Pubitemid 39612793)
11. C.J. Ding L. Qing Z.H. Li Y. Liu Y.J. Qian X.P. Zhou 2009 Genetic determinants of symptoms on viral DNA satellites Appl. Environ. Microbiol. 75 16 5380 5389 19542327 10.1128/AEM.01193-09 1:CAS:528:DC%2BD1MXhtVeltLnI
12. X.S. Ding W.L. Schneider S.R. Chaluvadi M.A. Mian R.S. Nelson 2006 Characterization of a Brome mosaic virus strain and its use as a vector for gene silencing in monocotyledonous hosts Mol. Plant Microbe Interact. 19 11 1229 1239 17073305 10.1094/MPMI-19-1229 1:CAS:528:DC%2BD28XhtFCgtbfE (Pubitemid 44607334)
13. J.J. English E. Mueller D.C. Baulcombe 1996 Suppression of virus accumulation in transgenic plants exhibiting silencing of nuclear genes Plant Cell 8 2 179 188 12239381 10.1105/tpc.8.2.179 1:CAS:528:DyaK28XhtlKqsbc%3D (Pubitemid 3035442)
14. A. Falk B.J. Feys L.N. Frost J.D. Jones M.J. Daniels J.E. Parker 1999 EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases PNAS 96 6 3292 3297 10077677 10.1073/pnas.96.6.3292 1:CAS:528:DyaK1MXhvFykuro%3D (Pubitemid 29148884)
15. C.M. Fauquet R.W. Briddon J.K. Brown E. Moriones J. Stanley M. Zerbini X.P. Zhou 2008 Geminivirus strain demarcation and nomenclature Arch. Virol. 153 4 783 821 18256781 10.1007/s00705-008-0037-6 1:CAS:528:DC%2BD1cXkvFagtLg%3D
16. A. Fire S. Xu M.K. Montgomery S.A. Kostas S.E. Driver C.C. Mello 1998 Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans Nature 391 6669 806 811 9486653 10.1038/35888 1:CAS:528:DyaK1cXhtlCju74%3D (Pubitemid 28099681)
17. V. Gossele I. Fache F. Meulewaeter M. Cornelissen M. Metzlaff 2002 SVISS-a novel transient gene silencing system for gene function discovery and validation in tobacco plants Plant J. 32 5 859 866 12472699 10.1046/j.1365-313X. 2002.01471.x 1:CAS:528:DC%2BD3sXjtFWqsA%3D%3D (Pubitemid 36016733)
18. C.J. Huang Y. Xie X.P. Zhou 2009 Efficient virus-induced gene silencing in plants using a modified geminivirus DNA1 component Plant Biotechnol. J. 7 3 254 265 19175519 10.1111/j.1467-7652.2008.00395.x 1:CAS:528:DC%2BD1MXkslGqu7o%3D
19. A. Igarashi K. Yamagata T. Sugai Y. Takahashi E. Sugawara A. Tamura H. Yaegashi N. Yamagishi T. Takahashi M. Isogai, et al. 2009 Apple latent spherical virus vectors for reliable and effective virus-induced gene silencing among a broad range of plants including tobacco, tomato, Arabidopsis thaliana, cucurbits, and legumes Virology 386 2 407 416 19243807 10.1016/j.virol.2009.01. 039 1:CAS:528:DC%2BD1MXjvVyqt7g%3D
20. R.A. Jefferson T.A. Kavanagh M.W. Bevan 1987 GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants EMBO J. 6 13 3901 3907 3327686 1:CAS:528:DyaL1cXovV2itQ%3D%3D
21. C. Koncz R. Mayerhofer Z. Koncz-Kalman C. Nawrath B. Reiss G.P. Redei J. Schell 1990 Isolation of a gene encoding a novel chloroplast protein by T-DNA tagging in Arabidopsis thaliana EMBO J. 9 5 1337 1346 2158442 1:CAS:528:DyaK3cXls1KnsL4%3D
22. M.H. Kumagai J. Donson G. Dellacioppa D. Harvey K. Hanley L.K. Grill 1995 Cytoplasmic inhibition of carotenoid biosynthesis with virus-derived RNA PNAS 92 5 1679 1683 7878039 10.1073/pnas.92.5.1679 1:CAS:528:DyaK2MXktFWrs74%3D
23. Z.H. Li Y. Xie X.P. Zhou 2005 Tobacco curly shoot virus DNAβ is not necessary for infection but intensifies symptoms in a host-dependent manner Phytopathology 95 8 902 908 18944412 10.1094/PHYTO-95-0902 1:CAS:528: DC%2BD2MXpsVart70%3D (Pubitemid 41033706)
24. Y.L. Liu M. Schiff R. Marathe S.P. Dinesh-Kumar 2002 Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for N-mediated resistance to Tobacco mosaic virus Plant J. 30 4 415 429 12028572 10.1046/j.1365-313X.2002.01297.x 1:CAS:528:DC%2BD38XltFaqsbg%3D (Pubitemid 34580742)
25. Y.L. Liu M. Schiff S.P. Dinesh-Kumar 2002 Virusinduced gene silencing in tomato Plant J. 31 6 777 786 12220268 10.1046/j.1365-313X.2002.01394.x 1:CAS:528:DC%2BD38XotFyjsbo%3D
26. S. Mansoor R.W. Briddon Y. Zafar J. Stanley 2003 Geminivirus disease complexes: an emerging threat Trends Plant Sci. 8 3 128 134 12663223 10.1016/S1360-1385(03)00007-4 1:CAS:528:DC%2BD3sXit1Kls7Y%3D (Pubitemid 36726469)
27. S. Mansoor Y. Zafar R.W. Briddon 2006 Geminivirus disease complexes: the threat is spreading Trends Plant Sci. 11 5 209 212 16616578 10.1016/j.tplants. 2006.03.003 1:CAS:528:DC%2BD28Xks1Oksbs%3D (Pubitemid 43674091)
28. C. Napoli C. Lemieux R. Jorgensen 1990 Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous genes in trans Plant Cell. 2 4 279 289 12354959 10.1105/tpc.2.4.279 1:CAS:528:DyaK3cXkvFalu7c%3D (Pubitemid 120029588)
29. J.R. Peart G. Cook B.J. Feys J.E. Parker D.C. Baulcombe 2002 An EDS1 orthologue is required for N-mediated resistance against Tobacco mosaic virus Plant J. 29 5 569 579 11874570 10.1046/j.1365-313X.2002.029005569.x 1:CAS:528:DC%2BD38XislOhsbo%3D (Pubitemid 34248749)
30. A. Purkayastha I. Dasgupta 2009 Virus-induced gene silencing: a versatile tool for discovery of gene functions in plants Plant Physiol. Biochem. 47 11-12 967 976 19783452 10.1016/j.plaphy.2009.09.001 1:CAS:528:DC%2BD1MXhsVajsrfK
31. V. Ramachandran X. Chen 2008 Small RNA metabolism in Arabidopsis Trends Plant Sci. 13 7 368 374 18501663 10.1016/j.tplants.2008.03.008 1:CAS:528:DC%2BD1cXotlOjt7Y%3D
32. C.M. Ryu A. Anand L. Kang K.S. Mysore 2004 Agrodrench: a novel and effective agroinoculation method for virus-induced gene silencing in roots and diverse Solanaceous species Plant J. 40 2 322 331 15447657 10.1111/j.1365-313X. 2004.02211.x 1:CAS:528:DC%2BD2cXhtVSjtL3M (Pubitemid 39404080)
33. G. Szittya D. Silhavy A. Molnar Z. Havelda A. Lovas L. Lakatos Z. Banfalvi J. Burgyan 2003 Low temperature inhibits RNA silencing-mediated defence by the control of siRNA generation EMBO J. 22 3 633 640 12554663 10.1093/emboj/cdg74 1:CAS:528:DC%2BD3sXitlKks7k%3D (Pubitemid 36193607)
34. X.R. Tao X.P. Zhou 2004 A modified viral satellite DNA that suppresses gene expression in plants Plant J. 38 5 850 860 15144385 10.1111/j.1365-313X. 2004.02087.x 1:CAS:528:DC%2BD2cXltlCrs7Y%3D (Pubitemid 38693463)
35. J.R. Tuttle A.M. Idris J.K. Brown C.H. Haigler D. Robertson 2008 Geminivirus-mediated gene silencing from Cotton leaf crumple virus is enhanced by low temperature in cotton Plant Physiol. 148 1 41 50 18621976 10.1104/pp.108.123869 1:CAS:528:DC%2BD1cXhtFKnurnF (Pubitemid 352847572)
36. O. Voinnet 2001 RNA silencing as a plant immune system against viruses Trends Genet. 17 8 449 459 11485817 10.1016/S0168-9525(01)02367-8 1:CAS:528:DC%2BD3MXlsFylu70%3D (Pubitemid 32727237)
37. S. Whitham S.P. Dinesh-Kumar D. Choi R. Hehl C. Corr B. Baker 1994 The product of the Tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor Cell 78 6 1101 1115 7923359 10.1016/0092-8674(94) 90283-6 1:CAS:528:DyaK2MXhtVamt78%3D (Pubitemid 24292336)
38. M. Wiermer B.J. Feys J.E. Parker 2005 Plant immunity: the EDS1 regulatory node Curr. Opin. Plant Biol. 8 4 383 389 15939664 10.1016/j.pbi.2005.05.010 1:CAS:528:DC%2BD2MXlsFGgtro%3D (Pubitemid 40817380)
39. P.J. Wu X.P. Zhou 2005 Interaction between a nanoviruslike component and the Tobacco curly shoot virus/satellite complex Acta Biochim. Biophys. Sin. 37 1 25 31 15645078 10.1093/abbs/37.1.25 1:CAS:528:DC%2BD2MXhs1ars7s%3D
40. Z.X. Xie L.K. Johansen A.M. Gustafson K.D. Kasschau A.D. Lellis D. Zilberman S.E. Jacobsen J.C. Carrington 2004 Genetic and functional diversification of small RNA pathways in plants PLoS Biol. 2 5 e104 15024409 10.1371/journal.pbio.0020104 (Pubitemid 39234476)
41. X.P. Zhou Y.L. Liu L. Calvert C. Munoz G.W. Otim-Nape D.J. Robinson B.D. Harrison 1997 Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination J. Gen. Virol. 78 8 2101 2111 9267014 1:CAS:528:DyaK2sXkvFCjtLw%3D (Pubitemid 27367701)
42. X.P. Zhou Y. Xie Z.K. Zhang 2001 Molecular characterization of a distinct begomovirus infecting tobacco in Yunnan, China Arch. Virol. 146 8 1599 1606 11676420 10.1007/s007050170081 1:CAS:528:DC%2BD3MXnslGntLY%3D (Pubitemid 32808516)