-
1
-
-
0028953161
-
Clinical evaluation of a Mycobacterium tuberculosis PCR assay
-
Beige, J., et al. 1995. Clinical evaluation of a Mycobacterium tuberculosis PCR assay. J. Clin. Microbiol. 33:90-95. (Pubitemid 24382405)
-
(1995)
Journal of Clinical Microbiology
, vol.33
, Issue.1
, pp. 90-95
-
-
Beige, J.1
Lokies, J.2
Schaberg, T.3
Finckh, U.4
Fischer, M.5
Mauch, H.6
Lode, H.7
Kohler, B.8
Rolfs, A.9
-
2
-
-
33846935699
-
Greater diversity of shiga toxin-encoding bacteriophage insertion sites among Escherichia coli O157:H7 isolates from cattle than in those from humans
-
DOI 10.1128/AEM.01035-06
-
Besser, T. E., et al. 2007. Greater diversity of Shiga toxin-encoding bacteriophage insertion sites among Escherichia coli O157:H7 isolates from cattle than in those from humans. Appl. Environ. Microbiol. 73:671-679. (Pubitemid 46233481)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.3
, pp. 671-679
-
-
Besser, T.E.1
Shaikh, N.2
Holt, N.J.3
Tarr, P.I.4
Konkel, M.E.5
Malik-Kale, P.6
Walsh, C.W.7
Whittam, T.S.8
Bono, J.L.9
-
3
-
-
0036959494
-
Characteristics and association with disease of two major subclones of Shiga toxin (Verocytotoxin)-producing strains of Escherichia coli (STEC) O157 that are present among isolates from patients in Germany
-
DOI 10.1016/S0732-8893(02)00474-1, PII S0732889302004741
-
Beutin, L., et al. 2002. Characteristics and association with disease of two major subclones of Shiga toxin (Verocytotoxin)-producing strains of Escherichia coli (STEC) O157 that are present among isolates from patients in Germany. Diagn. Microbiol. Infect. Dis. 44:337-346. (Pubitemid 36120711)
-
(2002)
Diagnostic Microbiology and Infectious Disease
, vol.44
, Issue.4
, pp. 337-346
-
-
Beutin, L.1
Kaulfuss, S.2
Cheasty, T.3
Brandenburg, B.4
Zimmermann, S.5
Gleier, K.6
Willshaw, G.A.7
Smith, H.R.8
-
4
-
-
33645650180
-
Microarray based comparison of two Escherichia coli O157:H7 lineages
-
Dowd, S. E., and H. Ishizaki. 2006. Microarray based comparison of two Escherichia coli O157:H7 lineages. BMC Microbiol. 6:30.
-
(2006)
BMC Microbiol.
, vol.6
, pp. 30
-
-
Dowd, S.E.1
Ishizaki, H.2
-
5
-
-
0036900232
-
Clinical Escherichia coli strains carrying stx genes: stx Variants and stx-positive virulence profiles
-
DOI 10.1128/JCM.40.12.4585-4593.2002
-
Eklund, M., K. Leino, and A. Siitonen. 2002. Clinical Escherichia coli strains carrying stx genes: stx variants and stx-positive virulence profiles. J. Clin. Microbiol. 40:4585-4593. (Pubitemid 35434952)
-
(2002)
Journal of Clinical Microbiology
, vol.40
, Issue.12
, pp. 4585-4593
-
-
Eklund, M.1
Leino, K.2
Siitonen, A.3
-
6
-
-
77953032930
-
Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
-
Excoffier, L., and H. E. L. Lischer. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10:564-567.
-
(2010)
Mol. Ecol. Resour.
, vol.10
, pp. 564-567
-
-
Excoffier, L.1
Lischer, H.E.L.2
-
7
-
-
34248680659
-
Shiga toxin-producing Escherichia coli: An overview
-
Gyles, C. L. 2007. Shiga toxin-producing Escherichia coli: an overview. J. Anim. Sci. 85:E45-E62.
-
(2007)
J. Anim. Sci.
, vol.85
-
-
Gyles, C.L.1
-
8
-
-
0000917309
-
Explicit calculation of rarefaction diversity measurement and determination of sufficient sample size
-
Heck, K. L., G. Vanbelle, and D. Simberloff. 1975. Explicit calculation of rarefaction diversity measurement and determination of sufficient sample size. Ecology 56:1459-1461.
-
(1975)
Ecology
, vol.56
, pp. 1459-1461
-
-
Heck, K.L.1
Vanbelle, G.2
Simberloff, D.3
-
9
-
-
26644464846
-
Prevalence of Shiga toxin-producing Escherichia coli in beef cattle
-
Hussein, H. S., and L. M. Bollinger. 2005. Prevalence of Shiga toxin-producing Escherichia coli in beef cattle. J. Food Prot. 68:2224-2241. (Pubitemid 41443201)
-
(2005)
Journal of Food Protection
, vol.68
, Issue.10
, pp. 2224-2241
-
-
Hussein, H.S.1
Bollinger, L.M.2
-
10
-
-
15044365804
-
Invited review: Prevalence of Shiga toxin-producing Escherichia coli in dairy cattle and their products
-
Hussein, H. S., and T. Sakuma. 2005. Prevalence of Shiga toxin-producing Escherichia coli in dairy cattle and their products. J. Dairy Sci. 88:450-465. (Pubitemid 40771938)
-
(2005)
Journal of Dairy Science
, vol.88
, Issue.2
, pp. 450-465
-
-
Hussein, H.S.1
Sakuma, T.2
-
11
-
-
33645714578
-
Second generation subtyping: A proposed PulseNet protocol for multiple-locus variable-number tandem repeat analysis of Shiga toxin-producing Escherichia coli O157 (STEC O157)
-
Hyytia-Trees, E., S. C. Smole, P. A. Fields, B. Swaminathan, and E. M. Ribot. 2006. Second generation subtyping: a proposed PulseNet protocol for multiple-locus variable-number tandem repeat analysis of Shiga toxin-producing Escherichia coli O157 (STEC O157). Foodborne Pathog. Dis. 3:118-131.
-
(2006)
Foodborne Pathog. Dis.
, vol.3
, pp. 118-131
-
-
Hyytia-Trees, E.1
Smole, S.C.2
Fields, P.A.3
Swaminathan, B.4
Ribot, E.M.5
-
12
-
-
34547861256
-
CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
-
DOI 10.1093/bioinformatics/btm233
-
Jakobsson, M., and N. A. Rosenberg. 2007. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23:1801-1806. (Pubitemid 47250313)
-
(2007)
Bioinformatics
, vol.23
, Issue.14
, pp. 1801-1806
-
-
Jakobsson, M.1
Rosenberg, N.A.2
-
13
-
-
41049117594
-
Relationship between pathogenicity for humans and stx genotype in Shiga toxin-producing Escherichia coli serotype O157
-
Kawano, K., M. Okada, T. Haga, K. Maeda, and Y. Goto. 2008. Relationship between pathogenicity for humans and stx genotype in Shiga toxin-producing Escherichia coli serotype O157. Eur. J. Clin. Microbiol. Infect. Dis. 27:227-232.
-
(2008)
Eur. J. Clin. Microbiol. Infect. Dis.
, vol.27
, pp. 227-232
-
-
Kawano, K.1
Okada, M.2
Haga, T.3
Maeda, K.4
Goto, Y.5
-
14
-
-
0033539485
-
Octamer-based genome scanning distinguishes a unique subpopulation of Escherichia coli O157:H7 strains in cattle
-
Kim, J., J. Nietfeldt, and A. K. Benson. 1999. Octamer-based genome scanning distinguishes a unique subpopulation of Escherichia coli O157:H7 strains in cattle. Proc. Natl. Acad. Sci. U. S. A. 96:13288-13293.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 13288-13293
-
-
Kim, J.1
Nietfeldt, J.2
Benson, A.K.3
-
15
-
-
68849091588
-
In silico genomic analyses reveal three distinct lineages of Escherichia coli O157: H7, one of which is associated with hypervirulence
-
Laing, C. R., et al. 2009. In silico genomic analyses reveal three distinct lineages of Escherichia coli O157:H7, one of which is associated with hypervirulence. BMC Genomics 10:287.
-
(2009)
BMC Genomics
, vol.10
, pp. 287
-
-
Laing, C.R.1
-
16
-
-
77749245790
-
Expanded multilocus sequence typing and comparative genomic hybridization of Campylobacter coli isolates from multiple hosts
-
Lang, P., et al. 2010. Expanded multilocus sequence typing and comparative genomic hybridization of Campylobacter coli isolates from multiple hosts. Appl. Environ. Microbiol. 76:1913-1925.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 1913-1925
-
-
Lang, P.1
-
17
-
-
66649094404
-
A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis
-
Leopold, S. R., et al. 2009. A precise reconstruction of the emergence and constrained radiations of Escherichia coli O157 portrayed by backbone concatenomic analysis. Proc. Natl. Acad. Sci. U. S. A. 106:8713-8718.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 8713-8718
-
-
Leopold, S.R.1
-
18
-
-
67651244069
-
Escherichia coli O157:H7 strain origin, lineage, and Shiga toxin 2 expression affect colonization of cattle
-
Lowe, R. M. S., et al. 2009. Escherichia coli O157:H7 strain origin, lineage, and Shiga toxin 2 expression affect colonization of cattle. Appl. Environ. Microbiol. 75:5074-5081.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 5074-5081
-
-
Lowe, R.M.S.1
-
19
-
-
42449105377
-
Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks
-
DOI 10.1073/pnas.0710834105
-
Manning, S. D., et al. 2008. Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks. Proc. Natl. Acad. Sci. U. S. A. 105:4868-4873. (Pubitemid 351753838)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.12
, pp. 4868-4873
-
-
Manning, S.D.1
Motiwala, A.S.2
Springman, A.C.3
Qi, W.4
Lacher, D.W.5
Ouellette, L.M.6
Mladonicky, J.M.7
Somsel, P.8
Rudrik, J.T.9
Dietrich, S.E.10
Zhang, W.11
Swaminathan, B.12
Alland, D.13
Whittam, T.S.14
-
20
-
-
35348912226
-
Enterohemorrhagic Escherichia coli
-
In M. P. Doyle, L. R. Beuchat, and T. J. Montville (ed.), 3rd ed. ASM Press, Washington, DC
-
Meng, J., M. P. Doyle, T. Zhao, and S. Zhao. 2007. Enterohemorrhagic Escherichia coli, p. 249-269. In M. P. Doyle, L. R. Beuchat, and T. J. Montville (ed.), Food microbiology: fundamentals and frontiers, 3rd ed. ASM Press, Washington, DC.
-
(2007)
Food Microbiology: Fundamentals and Frontiers
, pp. 249-269
-
-
Meng, J.1
Doyle, M.P.2
Zhao, T.3
Zhao, S.4
-
21
-
-
45849147393
-
Typing of Stx2 genes of Escherichia coli O157 isolates from cattle
-
Nakamura, H., J. Ogasawara, T. Kita, A. Hase, and Y. Nishikawa. 2008. Typing of Stx2 genes of Escherichia coli O157 isolates from cattle. Jpn. J. Infect. Dis. 61:251-252. (Pubitemid 351888607)
-
(2008)
Japanese Journal of Infectious Diseases
, vol.61
, Issue.3
, pp. 251-252
-
-
Nakamura, H.1
Ogasawara, J.2
Kita, T.3
Hase, A.4
Nishikawa, Y.5
-
22
-
-
0034086152
-
Relationship of genetic type of Shiga toxin to manifestation of bloody diarrhea due to enterohemorrhagic Escherichia coli serogroup O157 isolates in Osaka City, Japan
-
Nishikawa, Y., et al. 2000. Relationship of genetic type of Shiga toxin to manifestation of bloody diarrhea due to enterohemorrhagic Escherichia coli serogroup O157 isolates in Osaka City, Japan. J. Clin. Microbiol. 38:2440-2442. (Pubitemid 30414389)
-
(2000)
Journal of Clinical Microbiology
, vol.38
, Issue.6
, pp. 2440-2442
-
-
Nishikawa, Y.1
Zhou, Z.2
Hase, A.3
Ogasawara, J.4
Cheasty, T.5
Haruki, K.6
-
23
-
-
77953326081
-
Evidence for the clustering of antibacterial resistance phenotypes of enterococci within integrated poultry companies
-
Pleydell, E., L. Rogers, E. Kwan, and N. French. 2010. Evidence for the clustering of antibacterial resistance phenotypes of enterococci within integrated poultry companies. Microb. Ecol. 59:678-688.
-
(2010)
Microb. Ecol.
, vol.59
, pp. 678-688
-
-
Pleydell, E.1
Rogers, L.2
Kwan, E.3
French, N.4
-
24
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard, J. K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959. (Pubitemid 30397141)
-
(2000)
Genetics
, vol.155
, Issue.2
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
25
-
-
79951480123
-
-
R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria
-
R Development Core Team. 2010. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org.
-
(2010)
R: A Language and Environment for Statistical Computing
-
-
-
26
-
-
1342331102
-
DISTRUCT: A program for the graphical display of population structure
-
DOI 10.1046/j.1471-8286.2003.00566.x
-
Rosenberg, N. A. 2004. DISTRUCT: a program for the graphical display of population structure. Mol. Ecol. Notes 4:137-138. (Pubitemid 38261335)
-
(2004)
Molecular Ecology Notes
, vol.4
, Issue.1
, pp. 137-138
-
-
Rosenberg, N.A.1
-
27
-
-
0028300837
-
Highly conserved B-subunit genes of Shiga-like toxin II variants found in Escherichia coli O157 strains
-
DOI 10.1016/0378-1097(94)90525-8
-
Russmann, H., H. Schmidt, A. Caprioli, and H. Karch. 1994. Highly conserved B-subunit genes of Shiga-like toxin II variants found in Escherichia coli O157 strains. FEMS Microbiol. Lett. 118:335-340. (Pubitemid 24151892)
-
(1994)
FEMS Microbiology Letters
, vol.118
, Issue.3
, pp. 335-340
-
-
Russmann, H.1
Schmidt, H.2
Caprioli, A.3
Karch, H.4
-
28
-
-
0028937570
-
Molecular analysis of the plasmid-encoded hemolysin of Escherichia coli O157:H7 strain EDL 933
-
Schmidt, H., L. Beutin, and H. Karch. 1995. Molecular analysis of the plasmid-encoded hemolysin of Escherichia coli O157:H7 strain EDL 933. Infect. Immun. 63:1055-1061.
-
(1995)
Infect. Immun.
, vol.63
, pp. 1055-1061
-
-
Schmidt, H.1
Beutin, L.2
Karch, H.3
-
29
-
-
0028297951
-
Differentiation in virulence patterns of Escherichia coli possessing eae genes
-
Schmidt, H., et al. 1994. Differentiation in virulence patterns of Escherichia coli possessing eae genes. Med. Microbiol. Immunol. 183:23-31. (Pubitemid 24078948)
-
(1994)
Medical Microbiology and Immunology
, vol.183
, Issue.1
, pp. 23-31
-
-
Schmidt, H.1
Plaschke, B.2
Franke, S.3
Russmann, H.4
Schwarzkopf, A.5
Heesemann, J.6
Karch, H.7
-
30
-
-
62349136385
-
Escherichia coli O157:H7 lineages in healthy beef and dairy cattle and clinical human cases in Alberta, Canada
-
Sharma, R., et al. 2009. Escherichia coli O157:H7 lineages in healthy beef and dairy cattle and clinical human cases in Alberta, Canada. J. Food Prot. 72:601-607.
-
(2009)
J. Food Prot.
, vol.72
, pp. 601-607
-
-
Sharma, R.1
-
31
-
-
0028828571
-
Escherichia coli O157:H7 infection in humans
-
Su, C. Y., and L. J. Brandt. 1995. Escherichia coli O157:H7 infection in humans. Ann. Intern. Med. 123:698-714.
-
(1995)
Ann. Intern. Med.
, vol.123
, pp. 698-714
-
-
Su, C.Y.1
Brandt, L.J.2
-
32
-
-
79953889616
-
General recovery, characterisation and typing protocols for VTEC
-
In G. Duffy, P. Garvey, and D. A. McDowell (ed.), Food & Nutrition Press, Inc., Trumbull, CT
-
Thomson-Carter, F. 2001. General recovery, characterisation and typing protocols for VTEC. In G. Duffy, P. Garvey, and D. A. McDowell (ed.), Verocytotoxigenic E. coli. Food & Nutrition Press, Inc., Trumbull, CT.
-
(2001)
Verocytotoxigenic E. coli.
-
-
Thomson-Carter, F.1
-
33
-
-
0036792181
-
Detection in Escherichia coli of the genes encoding the major virulence factors, the genes defining the O157:H7 serotype, and components of the type 2 Shiga toxin family by multiplex PCR
-
Wang, G., C. G. Clark, and F. G. Rodgers. 2002. Detection in Escherichia coli of the genes encoding the major virulence factors, the genes defining the O157:H7 serotype, and components of the type 2 Shiga toxin family by multiplex PCR. J. Clin. Microbiol. 40:3613-3619.
-
(2002)
J. Clin. Microbiol.
, vol.40
, pp. 3613-3619
-
-
Wang, G.1
Clark, C.G.2
Rodgers, F.G.3
-
34
-
-
8744258835
-
Identification of common subpopulations of non-sorbitol-fermenting, β-glucuronidase-negative Escherichia coli O157:H7 from bovine production environments and human clinical samples
-
DOI 10.1128/AEM.70.11.6846-6854.2004
-
Yang, Z., et al. 2004. Identification of common subpopulations of nonsorbitol- fermenting, beta-glucuronidase-negative Escherichia coli O157:H7 from bovine production environments and human clinical samples. Appl. Environ. Microbiol. 70:6846-6854. (Pubitemid 39518597)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.11
, pp. 6846-6854
-
-
Yang, Z.1
Kovar, J.2
Kim, J.3
Nietfeldt, J.4
Smith, D.R.5
Moxley, R.A.6
Olson, M.E.7
Fey, P.D.8
Benson, A.K.9
-
35
-
-
78650194660
-
Biased distribution of IS629 among strains in different lineages of enterohemorrhagic Escherichia coli serovar O157
-
Yokoyama, E., et al. 2011. Biased distribution of IS629 among strains in different lineages of enterohemorrhagic Escherichia coli serovar O157. Infect. Genet. Evol. 11:78-82.
-
(2011)
Infect. Genet. Evol.
, vol.11
, pp. 78-82
-
-
Yokoyama, E.1
-
36
-
-
34250356064
-
Genome evolution in major Escherichia coli O157:H7 lineages
-
Zhang, Y., et al. 2007. Genome evolution in major Escherichia coli O157:H7 lineages. BMC Genomics 8:121.
-
(2007)
BMC Genomics
, vol.8
, pp. 121
-
-
Zhang, Y.1
-
37
-
-
75249090822
-
Lineage and host source are both correlated with levels of Shiga toxin 2 production by Escherichia coli O157:H7 strains
-
Zhang, Y. X., et al. 2010. Lineage and host source are both correlated with levels of Shiga toxin 2 production by Escherichia coli O157:H7 strains. Appl. Environ. Microbiol. 76:474-482.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 474-482
-
-
Zhang, Y.X.1
-
38
-
-
47749099379
-
Genotypic characterization and prevalence of virulence factors among Canadian Escherichia coli O157:H7 strains
-
DOI 10.1128/AEM.02821-07
-
Ziebell, K., et al. 2008. Genotypic characterization and prevalence of virulence factors among Canadian Escherichia coli O157:H7 strains. Appl. Environ. Microbiol. 74:4314-4323. (Pubitemid 352031012)
-
(2008)
Applied and Environmental Microbiology
, vol.74
, Issue.14
, pp. 4314-4323
-
-
Ziebell, K.1
Steele, M.2
Zhang, Y.3
Benson, A.4
Taboada, E.N.5
Laing, C.6
McEwen, S.7
Ciebin, B.8
Johnson, R.9
Gannon, V.10
|