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Volumn 11, Issue , 2011, Pages

An adaptable method using human mixed tissue ratiometric controls for benchmarking performance on gene expression microarrays in clinical laboratories

Author keywords

[No Author keywords available]

Indexed keywords

ALTERNATIVE METHODS; AREA UNDER THE CURVES; CHANGE DETECTION; CLINICAL UTILITY; COMMERCIAL SOURCES; COMPARATIVE MEASUREMENTS; DATA SETS; DIAGNOSTIC PERFORMANCE; DNA MICRO-ARRAY; DYNAMIC RANGE; EXPRESSION PROFILE; EXTERNAL CONTROL; GENE EXPRESSION DATA; GENE EXPRESSION MICROARRAY; GENOMIC DATA; HIGH DENSITY; HIGH QUALITY; HUMAN TISSUES; HYBRIDIZATION CONDITIONS; MOLECULAR BIOMARKER; PROCESS IMPROVEMENT; RATIOMETRIC; RECEIVER OPERATING CHARACTERISTICS; REFERENCE SET; STATISTICALLY SIGNIFICANT DIFFERENCE;

EID: 79953875426     PISSN: None     EISSN: 14726750     Source Type: Journal    
DOI: 10.1186/1472-6750-11-38     Document Type: Article
Times cited : (10)

References (26)
  • 3
    • 27844529344 scopus 로고    scopus 로고
    • Proposed methods for testing and selecting the ERCC external RNA controls
    • 10.1186/1471-2164-6-150, 1325234, 16266432, External RNA Controls Consortium
    • External RNA Controls Consortium Proposed methods for testing and selecting the ERCC external RNA controls. BMC Genomics 2005, 6:150. 10.1186/1471-2164-6-150, 1325234, 16266432, External RNA Controls Consortium.
    • (2005) BMC Genomics , vol.6 , pp. 150
  • 5
    • 77950789262 scopus 로고    scopus 로고
    • Standards affecting the consistency of gene expression arrays in clinical applications
    • 10.1158/1055-9965.EPI-10-0044, 2852479, 20332273
    • Enkemann SA. Standards affecting the consistency of gene expression arrays in clinical applications. Cancer Epidemiol Biomarkers Prev 2010, 19:1000-1003. 10.1158/1055-9965.EPI-10-0044, 2852479, 20332273.
    • (2010) Cancer Epidemiol Biomarkers Prev , vol.19 , pp. 1000-1003
    • Enkemann, S.A.1
  • 7
    • 0037317033 scopus 로고    scopus 로고
    • A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations
    • 10.1093/bioinformatics/19.2.178, 12538237
    • Naef F, Socci ND, Magnasco M. A study of accuracy and precision in oligonucleotide arrays: extracting more signal at large concentrations. Bioinformatics 2003, 19(2):178-84. 10.1093/bioinformatics/19.2.178, 12538237.
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 178-184
    • Naef, F.1    Socci, N.D.2    Magnasco, M.3
  • 9
    • 37848998510 scopus 로고    scopus 로고
    • Extended analysis of benchmark datasets for Agilent two-color microarrays
    • 10.1186/1471-2105-8-371, 2174956, 17915030
    • Kerr KF. Extended analysis of benchmark datasets for Agilent two-color microarrays. BMC Bioinformatics 2007, 8:371. 10.1186/1471-2105-8-371, 2174956, 17915030.
    • (2007) BMC Bioinformatics , vol.8 , pp. 371
    • Kerr, K.F.1
  • 12
    • 77957723086 scopus 로고    scopus 로고
    • Evaluation of gene expression data generated from expired Affymetrix GeneChip®microarrays using MAQC reference RNA samples
    • 10.1186/1471-2105-11-S6-S10, 3026357, 20946593
    • Wen Z, Wang C, Shi Q, Huang Y, Su Z, Hong H, Tong W, Shi L. Evaluation of gene expression data generated from expired Affymetrix GeneChip®microarrays using MAQC reference RNA samples. BMC Bioinformatics 2010, 11(Suppl 6):S10. 10.1186/1471-2105-11-S6-S10, 3026357, 20946593.
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 6
    • Wen, Z.1    Wang, C.2    Shi, Q.3    Huang, Y.4    Su, Z.5    Hong, H.6    Tong, W.7    Shi, L.8
  • 13
    • 71149110282 scopus 로고    scopus 로고
    • Automation of cDNA synthesis and labelling improves reproducibility
    • 10.1155/2009/396808, 2763127, 19841682
    • Klevebring D, Gry M, Lindberg J, Eidefors A, Lundeberg J. Automation of cDNA synthesis and labelling improves reproducibility. J Biomed Biotechnol 2009, 2009:396808. 10.1155/2009/396808, 2763127, 19841682.
    • (2009) J Biomed Biotechnol , vol.2009 , pp. 396808
    • Klevebring, D.1    Gry, M.2    Lindberg, J.3    Eidefors, A.4    Lundeberg, J.5
  • 16
  • 18
    • 36348997057 scopus 로고    scopus 로고
    • Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA
    • 10.1186/1472-6750-7-57, 2082023, 17854504
    • Thompson KL, Pine PS, Rosenzweig BA, Turpaz Y, Retief J. Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA. BMC Biotechnol 2007, 7:57. 10.1186/1472-6750-7-57, 2082023, 17854504.
    • (2007) BMC Biotechnol , vol.7 , pp. 57
    • Thompson, K.L.1    Pine, P.S.2    Rosenzweig, B.A.3    Turpaz, Y.4    Retief, J.5
  • 19
    • 33744549560 scopus 로고    scopus 로고
    • In vitro transcription amplification and labeling methods contribute to the variability of gene expression profiling with DNA microarrays
    • 10.2353/jmoldx.2006.050077, 1867595, 16645204
    • Ma C, Lyons-Weiler M, Liang W, LaFramboise W, Gilbertson JR, Becich MJ, Monzon FA. In vitro transcription amplification and labeling methods contribute to the variability of gene expression profiling with DNA microarrays. J Mol Diagn 2006, 8(2):183-92. 10.2353/jmoldx.2006.050077, 1867595, 16645204.
    • (2006) J Mol Diagn , vol.8 , Issue.2 , pp. 183-192
    • Ma, C.1    Lyons-Weiler, M.2    Liang, W.3    LaFramboise, W.4    Gilbertson, J.R.5    Becich, M.J.6    Monzon, F.A.7
  • 20
    • 34347395753 scopus 로고    scopus 로고
    • Robust interlaboratory reproducibility of a gene expression signature measurement consistent with the needs of a new generation of diagnostic tools
    • 10.1186/1471-2164-8-148, 1904205, 17553173
    • Ach RA, Floore A, Curry B, Lazar V, Glas AM, Pover R, Tsalenko A, Ripoche H, Cardoso F, d'Assignies MS, Bruhn L, Van't Veer LJ. Robust interlaboratory reproducibility of a gene expression signature measurement consistent with the needs of a new generation of diagnostic tools. BMC Genomics 2007, 8:148. 10.1186/1471-2164-8-148, 1904205, 17553173.
    • (2007) BMC Genomics , vol.8 , pp. 148
    • Ach, R.A.1    Floore, A.2    Curry, B.3    Lazar, V.4    Glas, A.M.5    Pover, R.6    Tsalenko, A.7    Ripoche, H.8    Cardoso, F.9    d'Assignies, M.S.10    Bruhn, L.11    Van't Veer, L.J.12
  • 21
    • 25444523728 scopus 로고    scopus 로고
    • Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications
    • 10.1373/clinchem.2005.053694, 16123149
    • Kurn N, Chen P, Heath JD, Kopf-Sill A, Stephens KM, Wang S. Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications. Clin Chem 2005, 51(10):1973-81. 10.1373/clinchem.2005.053694, 16123149.
    • (2005) Clin Chem , vol.51 , Issue.10 , pp. 1973-1981
    • Kurn, N.1    Chen, P.2    Heath, J.D.3    Kopf-Sill, A.4    Stephens, K.M.5    Wang, S.6
  • 22
    • 25444501563 scopus 로고    scopus 로고
    • Increased DNA microarray hybridization specificity using sscDNA targets
    • 10.1186/1471-2164-6-57, 1090574, 15847692
    • Barker CS, Griffin C, Dolganov GM, Hanspers K, Yang JY, Erle DJ. Increased DNA microarray hybridization specificity using sscDNA targets. BMC Genomics 2005, 6(1):57. 10.1186/1471-2164-6-57, 1090574, 15847692.
    • (2005) BMC Genomics , vol.6 , Issue.1 , pp. 57
    • Barker, C.S.1    Griffin, C.2    Dolganov, G.M.3    Hanspers, K.4    Yang, J.Y.5    Erle, D.J.6
  • 23
    • 61349198183 scopus 로고    scopus 로고
    • Comparison of the diagnostic performance of human whole genome microarrays using mixed-tissue RNA reference samples
    • 10.1016/j.toxlet.2008.08.018, 18822358
    • Thompson KL, Pine PS. Comparison of the diagnostic performance of human whole genome microarrays using mixed-tissue RNA reference samples. Toxicol Lett 2009, 186:58-61. 10.1016/j.toxlet.2008.08.018, 18822358.
    • (2009) Toxicol Lett , vol.186 , pp. 58-61
    • Thompson, K.L.1    Pine, P.S.2
  • 24
    • 67650410053 scopus 로고    scopus 로고
    • MammaPrint™ 70-gene signature: another milestone in personalized medical care for breast cancer patients
    • 10.1586/erm.09.32, 19580427
    • Slodkowska EA, Ross JS. MammaPrint™ 70-gene signature: another milestone in personalized medical care for breast cancer patients. Expert Rev Mol Diagn 2009, 9(5):417-22. 10.1586/erm.09.32, 19580427.
    • (2009) Expert Rev Mol Diagn , vol.9 , Issue.5 , pp. 417-422
    • Slodkowska, E.A.1    Ross, J.S.2
  • 26
    • 0020083498 scopus 로고
    • The meaning and use of the area under a receiver operating characteristic (ROC) curve
    • Hanley JA, McNeil BJ. The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 1982, 143:29-36.
    • (1982) Radiology , vol.143 , pp. 29-36
    • Hanley, J.A.1    McNeil, B.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.