Full sequence analysis and characterization of the South Korean Norovirus GII-4 variant CUK-3

Virology Journal

Volumn 8, Issue , 2011, Pages

  Park, Jeong Woong ^a   Lee, Sung Geun ^b   Lee, Young Min ^c   Jheong, Weon Hwa ^d   Ryu, Sangryeol ^a   Paik, Soon Young ^b  

^a Seoul National University   (South Korea)

^b The Catholic University of Korea   (South Korea)

^c Chungbuk National University College of Medicine   (South Korea)

^d National Institute of Environmental Research   (South Korea)

Author keywords

Norovirus; Phylogenetic tree; Sequence

Indexed keywords

ARTICLE; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; NOROVIRUS; NOROVIRUS GII 4; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PREVALENCE; SEQUENCE ANALYSIS; SOUTH KOREA; VIRUS ISOLATION; VIRUS STRAIN; CALICIVIRUS INFECTION; CLASSIFICATION; DNA SEQUENCE; GASTROENTERITIS; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; OPEN READING FRAME; PHYLOGENY; VIROLOGY; VIRUS GENOME;

NOROVIRUS;

BASE SEQUENCE; CALICIVIRIDAE INFECTIONS; GASTROENTERITIS; GENETIC VARIATION; GENOME, VIRAL; HUMANS; MOLECULAR SEQUENCE DATA; NOROVIRUS; OPEN READING FRAMES; PHYLOGENY; REPUBLIC OF KOREA; SEQUENCE ANALYSIS, DNA;

EID: 79953858171     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-8-167     Document Type: Article

References (19)

1. Norovirus pathogenesis: mechanisms of persistence and immune evasion in human populations. EF Donaldson LC Lindesmith AD Lobue RS Baric, Immunol Rev 2008 225 190 211 10.1111/j.1600-065X.2008.00680.x 18837783
2. Molecular epidemiology of norovirus infections in children with acute gastroenteritis in South Korea in November 2005 through November 2006. JS Yoon SG Lee SK Hong SA Lee WH Jheong SS Oh MH Oh GP Ko CH Lee SY Paik, J Clin Microbiol 2008 46 1474 1477 10.1128/JCM.02282-07 18272704
3. A protein covalently linked topoliovirus genome RNA. YF Lee A Nomoto BM Detjen E Wimmer, Proc Natl Acad Sci USA 1977 74 59 63 10.1073/pnas.74.1.59 189316 (Pubitemid 8025870)
4. Systematic nomenclature of picornavirus proteins. RR Rueckert E Wimmer, J Virol 1984 50 957 959 6726891 (Pubitemid 14105618)
5. Mutations within the P2 domain of norovirus capsid affect binding to human histo-blood group antigens: evidence for a binding pocket. M Tan P Huang J Meller W Zhong T Farkas X Jiang, J Virol 2003 77 12562 12571 10.1128/JVI.77.23.12562-12571.2003 14610179 (Pubitemid 37430652)
6. Evolution of human calicivirus RNA in vivo: accumulation of mutations in the protruding P2 domain of the capsid leads to structural changes and possibly a new phenotype. MK Nilssson O Hedlund M Thorhagen G Larson K Johansen A Ekspong L Svensson, J Virol 2003 77 13117 13124 10.1128/JVI.77.24.13117-13124.2003 14645568 (Pubitemid 37494307)
7. Epitopes in the P2 domain of norovirus VP1 recognized by monoclonal antibodies that block cell interactions. VP Lochridge KI Jutila JW Graff ME Hardy, J Gen Virol 2005 86 2799 2806 10.1099/vir.0.81134-0 16186235 (Pubitemid 41410471)
8. Norwalk virus open reading frame 3 encodes aminor structural protein. PJ Glass LJ White JM Bull I Leparc-Goffart ME Hardy MK Estes, J Virol 2000 74 6581 6591 10.1128/JVI.74.14.6581-6591.2000 10864672 (Pubitemid 30429827)
9. The 3' end of Norwalk virus mRNA contains determinants that regulate the expression and stability of the viral capsid protein VP1: a novel function for the VP2 protein. A Bertolotti-Ciariet SE Crawford AM Hutson MK Estes, J Virol 2003 77 11603 11615 10.1128/JVI.77.21.11603-11615.2003 14557646 (Pubitemid 37271659)
10. Carlow virus, a 2002 GII-4 variant norovirus strain from Ireland. K Kearney J Menton JG Morgan, Virol J 2007 4 61 10.1186/1743-422X-4-61 17567897
11. Detection of genogroup IV noroviruses in environmental and clinical samples and partial sequencing through rapid amplification of cDNA ends. G La Rosa M Pourshaban M Iaconelli M Muscillo, Arch Virol 2008 153 2077 2083 10.1007/s00705-008-0241-4 18985275
12. Identification of monomorphic and divergent haplotypes in the 2006-2007 norovirus GII/4 epidemic population by genome wide tracing of evolutionary history. K Motomura T Oka M Yokoyama H Nakamura H Mori H Ode GS Hansman K Katayama T Kanda T Tanaka N Takeda H Sato, J Virol 2008 82 11247 11262 10.1128/JVI.00897-08 18768979
13. Distinct epidemiological patterns of Norwalk-like virus infection. A Hale K Mattick D Lewis M Estes X Jiang J Green R Eglin D Brown, J Med Virol 2000 62 99 103 10.1002/1096-9071(200009)62:1<99::AID-JMV15>3.0.CO;2-0 10935995
14. Norovirus gastroenteritis. RI Glass UD Parashar MK Estes, N Engl J Med 2009 361 1776 1785 10.1056/NEJMra0804575 19864676
15. Increase in viral gastroenteritis outbreaks in Europe and epidemic spread of new norovirus variant. B Lopman H Vennema E Kohli P Pothier A Sanchez A Negredo J Buesa E Schreier M Reacher D Brown J Gray M Iturriza C Gallimore B Bottiger KO Hedlund M Torvén CH von Bonsdorff L Maunula M Poljsak-Prijatelj J Zimsek G Reuter G Szücs B Melegh L Svennson Y van Duijnhoven M Koopmans, Lancet 2004 363 682 688 10.1016/S0140-6736(04)15641-9 15001325 (Pubitemid 38296554)
16. Characterisation of a GII-4 norovirus variant-specific surface-exposed site involved in antibody binding. DJ Allen R Noad D Samuel JJ Gray P Roy M Iturriza-Gómara, Virol J 2009 6 150 10.1186/1743-422X-6-150 19781066
17. Detection of GII-4/2006b Variant and Recombinant Noroviruses in Children With Acute Gastroenteritis, South Korea. JY Chung TH Han SH Park SW Kim ES Hwang, J Med Virol 2010 82 146 152 10.1002/jmv.21650 19950237
18. A typical norovirus epidemic in Hong Kong during summer of 2006 caused by a new genogroup II/4 variant. EC Ho PK Cheng AW Lau AH Wong WW Lim, J Clin Microbiol 2007 45 2205 2211 10.1128/JCM.02489-06 17475764 (Pubitemid 47203794)
19. Epidemics of gastroenteritis during 2006 were associated with the spread of norovirus GII.4 variants 2006a and 2006b. ET Tu RA Bull GE Greening J Hewitt MJ Lyon JA Marshall CJ McIver WD Rawlinson PA White, Clin Infect Dis 2008 46 413 420 10.1086/525259 18177226 (Pubitemid 351263524)