Detection of GII-4/2006b variant and recombinant noroviruses in children with acute gastroenteritis, south Korea

Journal of Medical Virology

Volumn 82, Issue 1, 2010, Pages 146-152

  Chung, Ju Young ^a   Han, Tae Hee ^a   Park, Sang Hun ^b   Kim, Sang Woo ^a   Hwang, Eung Soo ^c  

^a Inje University College of Medicine   (South Korea)

^b Metropolitan Government Research Institute of Public Health and Environment   (South Korea)

^c Seoul National University   (South Korea)

Author keywords

Children; Norovirus; Recombinant; Variant strain

Indexed keywords

ACUTE GASTROENTERITIS; ADENOVIRUS; ARTICLE; CHILD; GENETIC RECOMBINATION; GENETIC VARIABILITY; HUMAN; INFANT; MAJOR CLINICAL STUDY; MOLECULAR EPIDEMIOLOGY; NOROVIRUS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; SEQUENCE ANALYSIS; SOUTH KOREA; VIRUS CAPSID; VIRUS DETECTION; VIRUS RECOMBINANT; VIRUS STRAIN;

CALICIVIRIDAE INFECTIONS; CHILD, PRESCHOOL; DIARRHEA; FECES; FEMALE; GASTROENTERITIS; GENETIC VARIATION; GENOTYPE; HUMANS; INFANT; INFANT, NEWBORN; MALE; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; NOROVIRUS; PHYLOGENY; RECOMBINATION, GENETIC; REPUBLIC OF KOREA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

ADENOVIRIDAE; MIRIDAE; NOROVIRUS; RNA VIRUSES; ROTAVIRUS;

EID: 74849102720     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21650     Document Type: Article

References (34)

1. Ando T, Noel JS, Fankhauser RL. Genetic classification of "Norwalklike viruses" 2000. J Infect Dis 181:S336-S348.
2. Buesa J, Collado B, Lopez-Andujar P, Abu-Mallouh R, Rodriguez Diaz J, Garcia Diaz A, Prat J, Guix S, Llovet T, Prats G, Bosch A. 2002. Molecular epidemiology of caliciviruses causing outbreaks and sporadic cases of acute gastroenteritis in Spain. J Clin Microbiol 40:2854-2859.
3. Buesa J, Montava R, Abu-Mallouh R, Fos M, Ribes JM, Bartolome R, Vanaclocha H, Torner N, Dominguez A. 2008. Sequential evolution of genotype GII.4 norovirus variants causing gastroenteritis outbreaks from 2001 to 2006 in East Spain. J Med Virol 80:1288-1295.
4. Bull RA, Hansman GS, Clancy LE, Tanaka MM, Rawlinson WD, White PA. 2005. Norovirus recombination in ORF1/ORF2 overlap. Emerg Infect Dis 11:1079-1085.
5. Bull RA, TanakaMM,White PA. 2007. Norovirus recombination. J Gen Virol 88:3347-3359.
6. Carlsson B, Lindberg AM, Rodriguez-Diaz J, Hedlund KO, Persson B, Svensson L. 2009. Quasispecies dynamics and molecular evolution of human norovirus capsid P region during chronic infection. J Gen Virol 90:432-441.
7. Chhabra P, Dhongade RK, Kalrao VR, Bavdekar AR, Chitambar SD. 2009. Epidemiologic, clinical, and molecular features of norovirus infections in Western India. J Med Virol 81:922-932.
8. Ho EC, Cheng PK, Lau AW, Wong AH, Lim WW. 2007. Atypical norovirus epidemic inHongKong during summer of 2006 caused by a new genogroup II/4 variant. J Clin Microbiol 45:2205-2211.
9. Hukuda S, Sasaki Y, Takao S, Seno M. 2008. Recombinant norovirus implicated in gastroenteritis outbreaks in Hiroshima prefecture. Jpn J Med Virol 80:921-928.
10. Ike AC, Brockmann SO, Hartelt K, Marschang RE, Contzen M, Oehme RM. 2006. Molecular epidemiology of norovirus in outbreaks of gastroenteritis in southwest Germany from 2001 to 2004. J Clin Microbiol 44:1262-1267.
11. Jin M, Xie HP, Duan ZJ, Liu N, Zhang Q, Wu BS, Li HY, Cheng WX, Yang SH, Yu JM, Xu ZQ, Cui SX, Zhu L, TanM, Jiang X, Fang ZY. 2008. Emergence of the GII4/2006b variant and recombinant noroviruses in China. J Med Virol 80:1997-2004.
12. Kageyama T, Shinohara M, Uchida K, Fukushi S, Hoshino FB, Kojima S, Takai R, Oka T, Takeda N, Katayama K. 2004. Coexistence of multiple genotypes, including newly identified genotypes, in outbreaks of gastroenteritis due to norovirus in Japan. JClin Microbiol 42:2988-2995.
13. Kim SH, Chen DS, Kim JH, Lee DH, Jheong WH, Heo YJ, Chung HM, Jee Y, Lee JS. 2005. Outbreaks of gastroenteritis that occurred during school excursions in Korea were associated with several waterborne strains of norovirus. J Clin Microbiol 43:4836-4839.
14. Kojima S, Kageyama T, Fukushi S, Hoshino FB, ShinoharaM, Uchida K. 2002. Genogroup-specific PCR primers for detection of Norwalklike viruses. J Virol Methods 100:107-114.
15. Kumar S, Tamura K, Nei M. 2004. MEGA3: Integrated software for molecular evolutionary genetic analysis and sequence alignment. Brief Bioinform 5:150-163.
16. Lee C, Kim SJ. 2008. The genetic diversity of human noroviruses detected in river water in Korea. Water Res 42:4477-4484.
17. Lindesmith LC, Donaldson EF, LoBue AD, Cannon JL, Zheng DP, Vinje J, Baric RS. 2008. Mechanism of GII.4 norovirus persistence in human populations. PLoS Med 5:e31.
18. Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, Novak NG, Ingersoll R, Sheppard HW, Ray SC. 1999. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73:152-160.
19. Mattner F, Sohr D, Heim A, Gastmeier P, Vennema H, Koopmans M. 2006. Risk groups for clinical complications of norovirus infections: An outbreak investigation. Clin Microbiol Infect 12:69-74
20. Nayak MK, Balasubramanian G, Sahoo GC, Bhattacharya R, Vinje J, Kobayashi N, Sarkar MC, Bhattacharya MK, Krishnan T. 2008. Detection of a novel intergenogroup recombinant norovirus from Kolkata, India. Virology 377:117-123.
21. Phan TG, Kuroiwa T, Kaneshi K, Ueda Y, Nakaya S, Nishimura S, Yamamoto A, Sugita K, Nishimura T, Yagyu F, Okitsu S, Muller WE, Maneekarn N, Ushijima H. 2006. Changing distribution of norovirus genotypes and genetic analysis of recombinant GIIb among infants and children with diarrhea in Japan. J Med Virol 78:971-978.
22. Phan TG, Kaneshi K, Ueda Y, Nakaya S, Nishimura S, Yamamoto A, Sugita K, Takanashi S, Okitsu S, Ushijima H. 2007. Genetic heterogeneity, evolution, and recombination in noroviruses. J Med Virol 79:1388-1400.
23. Posada D. 2002. Evaluation of methods for detecting recombination from DNA sequences: Empirical data. Mol Biol Evol 19:708-717.
24. Rachakonda G, Choudekar A, Parveen S, Bhatnagar S, Patwari A, Broor S. 2008. Genetic diversity of noroviruses and sapoviruses in children with acute sporadic gastroenteritis in New Delhi, India. J Clin Virol 43:42-48.
25. Rawlinson WD, White PA. 2008. Epidemics of gastroenteritis during 2006 were associated with the spread of norovirus GII.4 variants 2006a and 2006b. Clin Infect Dis 46:413-420.
26. Siebenga JJ, Vennema H, Duizer E, Koopmans M. 2007. Gastroenteritis caused by norovirus GII4, the Netherlands, 1994-2005. Emerg Infect Dis 13:144-146.
27. Smith JM. 1992. Analyzing the mosaic structure of genes. J Mol Evol 34:126-129.
28. Tu ET, Nguyen T, Lee P, Bull RA, Musto J, Hansman G, White PA, Rawlinson WD, Mclver CJ. 2007. Norovirus GII.4 strains and outbreaks, Australia. Emerg Infect Dis 13:1128-1130.
29. Vainio K, Myrmel M. 2006. Molecular epidemiology of norovirus outbreaks in Norway during 2000 to 2005 and comparison of four norovirus real-time reverse transcriptase PCR assays. J Clin Microbiol 44:3695-3702.
30. Vidal R, Roessler P, Solari V, Vollaire J, Jiang X, Matson DO, Mamani N, Prado V, O'Ryan ML. 2006. Novel recombinant norovirus causing outbreaks of gastroenteritis in Santiago, Chile. J Clin Microbiol 44:2271-2275.
31. Wu FT, Oka T, Katayama K, Wu HS, Jiang DS, Miyamura T, Takeda N, Hansman GS. 2006. Genetic diversity of noroviruses in Taiwan between November 2004 and March 2005. Arch Virol 151:1319-1327.
32. Yan H, Yagyu F, Okitsu S, Nishio O, Ushijima H. 2003. Detection of norovirus (GI,GII), Sapovirus and astrovirus in fecal samples using reverse transcription single-round multiplex PCR. J Virol Methods 114:37-44.
33. Yoon JS, Lee SG, Hong SK, Lee SA, Jheong WH, OhSS, OhMH, Ko GP, Lee CH, Paik SY. 2008. Molecular epidemiology of norovirus infections in children with acute gastroenteritis in South Korea in November 2005 through November 2006. JClin Microbiol 46:1474-1477.
34. Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RI, Monroe SS. 2006. Norovirus classification and proposed strain nomenclature. Virology 346:312-323.