Network model and efficient method for detecting relative duplications or horizontal gene transfers

2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2011

Volumn , Issue , 2011, Pages 214-219

  Zhang, Louxin ^a   Ng, Yen Kaow ^b   Wu, Taoyang ^a   Zheng, Yu ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b UNIVERSITI TUNKU ABDUL RAHMAN   (Malaysia)

Author keywords

Gene duplication; Gene loss; Gene tree and species tree reconciliation; Horizontal gene transfer; Phylogenetic network

Indexed keywords

GENE DUPLICATIONS; GENE LOSS; GENE TREE AND SPECIES TREE RECONCILIATION; HORIZONTAL GENE TRANSFER; PHYLOGENETIC NETWORKS;

ANIMALS; BACTERIA; BACTERIOLOGY; GENE TRANSFER; MAXIMUM LIKELIHOOD; MEDICAL COMPUTING;

GENES;

EID: 79953833624     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICCABS.2011.5729883     Document Type: Conference Paper

References (29)

1. Bafna V et al, J. Comput. Biol. 2000, 7:59-70.
2. Beiko GR, Ragan M, Bioinformatics, Volume I: Data, Sequence Analysis, and Evolution 2008, 452:457-469.
3. Bock R, Trends in Plant Science 2009, 15:11-22.
4. Boucher Y, Bapteste E, BioEssays 2009, 31:526-536.
5. Chauve C, El-Mabrouk N, In Proc. RECOMB'2009. 5541 Springer Verlag; pp. 46-58.
6. Chen K et al, J Comput. Biol. 2000, 7:429-447.
7. Cohen O, Pupko T, Mol. Biol. Evol. 2010, 27(3):703-713.
8. Csürös M, Miklós I, In Proc. RECOMB'2006, Springer Verlag, pp. 206-220.
9. Cusimano N et al., Mol. Biol. Evol. 2008, 25:265-276.
10. Doyan J-P et al., In Proc. RECOMB CG'2010. (in press).
11. Gorecki P, Tiutyn T, Theoret. Comput. Sci. 2006, 359:378- 399.
12. Goodman M et al., Syst. Zool. 1979, 28:132-163.
13. Gorbunov KY, Lyubetsky VA, Mol. Biol. 2009, 43:946-958.
14. Hallett M, Lagergren J In Proc. RECOMB'2001, ACM Press; 2001:149-156.
15. Jin G et al., Mol. Biol. Evol. 2007, 24(1):324-337.
16. Keeling PJ, Palmer JD, Nat. Rev. Genet. 2008, 9:605-618.
17. Kunin V et al., Genome Res. 2005, 15:954-959.
18. Libeskind-Hadas R, Charleston MA, J. Comput. Biol. 2009, 16:105-117.
19. Ma LJ, et al., PLoS Genet. 5(7):e1000549.
20. MacLeod D et al., BMC Evol. Biol. 2005, 5: e27.
21. Mirkin BG et al., BMC Evol. Biol. 2003, 3:e2.
22. Moret BME et al., IEEE/ACM Trans. Comput. Biol. Bioinform. 2004, 1:13-23.
23. Ovadia Y et al., 2009, Manuscript.
24. Page R, Syst. Biol. 1994, 43:58-77.
25. Slot JC, Rokas A, Proc. Nat'l Amer. Sci. 2010, 107:10136- 10141.
26. Tofigh A et al., IEEE/ACM Trans. on Comput. Biol. & Bioinform. 2010, 8: 517-535.
27. Tsirigos A, Rigoutsos I, Nucl. Acids Res. 2005, 33:922-933.
28. Zhang LX, J. Comput. Biology 1997, 4:177-187.
29. Zhang LX, Cui Y, In Proceedings of WABI'10, pp. 300-311.