Prorocentrum rivalis sp. nov. (Dinophyceae) and its phylogenetic affinities inferred from analysis of a mixed morphological and LSU rRNA data set

Biologia

Volumn 66, Issue 3, 2011, Pages 418-424

  Delmail, David ^a   Labrousse, Pascal ^a   Crassous, Philippe ^b   Hourdin, Philippe ^a   Guri, Mathieu ^c   Botineau, Michel ^a  

^a UNIVERSITÉ DE LIMOGES   (France)

^b IFREMER   (France)

^c Centre National de la Recherche Scientifique   (France)

Author keywords

epiphytic microalgae; LSU; phylogeny; polyphasic approach; Prorocentrum rivalis; SEM

Indexed keywords

DINOPHYCEAE; PROROCENTRUM;

EID: 79953783192     PISSN: 00063088     EISSN: 13369563     Source Type: Journal    
DOI: 10.2478/s11756-011-0029-y     Document Type: Article

References (43)

1. Aligizaki K., Nikolaidis G., Katikou P., Baxevanis A. D. & Abatzopoulos T. J. 2009. Potentially toxic ephytic Prorocentrum (Dinophyceae) species in Greek coastal waters. Harmful Algae 8: 299-311.
2. Berrendero E., Perona E. & Mateo P. 2008. Genetic and morphological characterization of Rivularia and Calothrix (Nostocales, Cyanobacteria) from running water. Int. J. Syst. Evol. Microbiol. 58: 447-460.
3. Cameron S. A. & Williams P. H. 2003. Phylogeny of bumble bees in the New World subgenus Fervidobombus (Hymenoptera: Apidae): congruence of molecular and morphological data. Mol. Phylogenet. Evol. 28: 552-563.
4. Cohen-Fernandez E. J., Meave Del Castillo E., Salgado Ugarte I. H. & Pedroche F. F. 2006. Contribution of external morphology in solving a species complex: The case of Prorocentrum micans, Prorocentrum gracile and Prorocentrum sigmoides (Dinoflagellata) from the Mexican Pacific Coast. Phycological Res. 54: 330-340.
5. Cortés-Altamirano R. & Sierra-Beltrán A. P. 2003. Morphology and taxonomy of Prorocentrum mexicanum and reinstatement of Prorocentrum rhathymum (Dinophyceae). J. Phycology 39: 221-225.
6. Croome R. L. & Tyler P. A. 1987. Prorocentrum playfairi and Prorocentrum foveolata, two new Dinoflagellates from Australian freshwaters. Eur. J. Phycology 22: 67-75.
7. Faust M. A. 1990. Morphologic details of six benthic species of Prorocentrum (Pyrrophyta) from a mangrove island, twin cays, Belize, including two new species. J. Phycology 26: 548-558.
8. Faust M. A. 1993. Prorocentrum belizeanum, Prorocentrum elegans and Prorocentrum caribbaeum, three new benthic species (Dinophyceae) from a mangrove island Twin Cays, Belize. J. Phycology 29: 100-107.
9. Faust M. A. 1994. Three new benthic species of Prorocentrum (Dinophyceae) from Carrie Bow Cay, Belize: P. sabulosum sp. nov., P. sculptile sp. nov., and P. arenarium sp. nov. J. Phycology 30: 755-763.
10. Faust M. A. 2008. Prorocentrum levis, a new benthic species (Dinophyceae) from a mangrove island, Twin Cays, Belize. J. Phycology 44: 232-240.
11. Felsenstein J. 1989. PHYLIP - Phylogeny Inference Package (Version 3. 2). Cladistics 5: 164-166.
12. Fukuyo Y. 2004. Biological Character of Red-Tide Organisms, pp. 61-178. In: Okaichi T. (ed), Red Tides, Terra Scientific Publishing Company, Tokyo.
13. Giribet G. 2010. A new dimension in combining data? The use of morphology and phylogenomic data in metazoan systematics. Acta Zool. 91: 11-19.
14. Grzebyk D., Sako Y. & Berland B. 1998. Phylogenetic analysis of nine species of Prorocentrum (Dinophyceae) inferred from 18S ribosomal DNA sequences, morphological comparisons and description of Prorocentrum panamensis, sp. nov. J. Phycology 34: 1055-1068.
15. Helbling E. W., Buma A. G. J., van de Poll W., Fernández Zenoff M. V. & Villafańe V. E. 2008. UVR-induced photosynthetic inhibition dominates over DNA damage in marine dinoflagellates exposed to fluctuating solar radiation regimes. J. Exp. Mar. Biol. Ecol. 365: 96-102.
16. Hernández-Becerril D. U., Cortés Altamirano R. & Alonso R. R. 2000. The dinoflagellate genus Prorocentrum along the coasts of the Mexican Pacific. Hydrobiologia 418: 111-121.
17. Hoppenrath M. & Leander B. S. 2008. Morphology and molecular phylogeny of a new-marine sand-dwelling Prorocentrum species, P. tsawwassenense (Dinophyceae, Prorocentrales), from British Columbia, Canada. J. Phycology 44: 451-466.
18. Kearney M. 2002. Fragmentary taxa, missing data, and ambiguity: Mistaken assumptions and conclusions. Systemat. Biol. 51: 369-381.
19. Krakhmalnyy A. F. 2005. Prorocentrum dentatum - New for the Black Sea species of Dinoflagellata. Vestnik Zoologii 39: 61-64.
20. Litaker R. W., Tester P. A., Colorni A., Levy M. G. & Noga E. J. 1999. The phylogenetic relationship of Pfiesteria piscicida, Cryptoperidiniopsoid sp., Amyloodinium ocellatum and a Pfiesteria-like dinoflagellate to other dinoflagellates and apicomplexans. J. Phycology 35: 1379-1389.
21. Lu D. & Goebel J. 2001. Five red tide species in genus Prorocentrum including the description of Prorocentrum donghaiense Lu sp. nov. from the East China Sea. Chin. J. Oceanol. Limnol. 19: 337-344.
22. Lu D., Goebel J., Qi Y., Zou J., Han X., Gao Y. & Li Y. 2005. Morphological and genetic study of Prorocentrum donghaiense Lu from the East China Sea, and comparison with some related Prorocentrum species. Harmful Algae 4: 493-505.
23. Luria S. M. & Kinney J. A. 1970. Underwater vision. Science 167: 1454-1461.
24. Morton S. L. 1998. Morphology and toxicology of Prorocentrum faustiae sp. nov., a toxic species of non-planktonic Dinoflagellate from Heron Island, Australia. Botanica Marina 41: 565-569.
25. Morton S. L., Faust M. A., Fairey E. A. & Moeller P. D. R. 2002. Morphology and toxicology of Prorocentrum arabianum sp. nov., (Dinophyceae) a toxic planktonic dinoflagellate from the Gulf of Oman, Arabian Sea. Harmful Algae 1: 393-400.
26. Murray S., Flř Jřrgensen M., Ho S. Y. W., Patterson D. J. & Jermiin L. S. 2005. Improving the analysis of dinoflagellate phylogeny based on rDNA. Protist 156: 269-286.
27. Murray S., Ip C. L. C, Moore R., Nagahama Y. & Fukuyo Y. 2009. Are Prorocentroid Dinoflagellates monophyletic? A study of 25 species based on nuclear and mitochondrial genes. Protist 160: 245-264.
28. Murray S., Nagahama Y. & Fukuyo Y. 2007. Phylogenetic study of benthic, spine-bearing prorocentroids, including Prorocentrum fukuyoi sp. nov. Phycological Res. 55: 91-102.
29. Noesis. 2005. Visilog6-Viewer. Version 6. 404.
30. Noesis, Crolles. Norell M. A. & Wheeler W. C. 2003. Missing entry replacement data analysis: A replacement approach to dealing with missing data in paleontological and total evidence data sets. J. Vertebr. Pal. 23: 275-283.
31. Rengefors K., Laybourn-Parry J., Logares R., Marshall W. A. & Hansen G. 2008. Marine-derived dinoflagellates in Antarctic saline lakes: Community composition and annual dynamics. J. Phycology 44: 592-604.
32. Saldarriaga J. F., Taylor F. J. R., Cavalier-Smith T., Menden-Deuer S. & Keeling P. J. 2004. Molecular data and the evolutionary history of dinoflagellates. Eur. J. Protist. 40: 85-111.
33. Springer M. S., Teeling E. C., Madsen O., Stanhope M. J. & de Jong W. W. 2001. Integrated fossil and molecular data reconstruct bat echolocation. PNAS 98: 6241-6246.
34. Steidinger K. A. & Tangen K. 1996. Dinoflagellates, pp. 387-598. In: Tomas C. R. (ed), Identifying Marine Diatoms and Dinoflagellates, Academic Press, New York.
35. Ten-Hage L., Turquet J., Quod J. P., Puiseux-Dao S. & Couté A. 2000. Prorocentrum borbonicum sp. nov. (Dinophyceae), a new toxic benthic dinoflagellate from the southwestern Indian Ocean. Phycologia 39: 296-301.
36. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F. & Higgins D. G. 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24: 4876-4882.
37. Varga J., Frisvard J. C. & Samson R. A. 2007. Polyphasic taxonomy of Aspergillus section Candidi based on molecular, morphological and physiological data. Stud. Mycol. 59: 75-88.
38. Wenzel J. W. & Siddall M. E. 1999. Noise. Cladistics 15: 51-64.
39. Wiens J. J. 1998. Does adding characters with missing data increase or decrease phylogenetic accuracy? Systemat. Biol. 47: 625-640.
40. Wiens J. J. 2003. Missing data, incomplete taxa, and phylogenetic accuracy. Systemat. Biol. 52: 528-538.
41. Wiens J. J. 2005. Can incomplete taxa rescue phylogenetic analyses from long-branch attraction? Systemat. Biol. 54: 731-742.
42. Wiens J. J. 2006. Missing data and the design of phylogenetic analyses. J. Biomed. Inform. 39: 34-42.
43. Yli-Mattila T., Paavanen-Huhtala S., Bulat S. A., Alekhina I. A. & Nirenberg H. I. 2002. Molecular, morphological and phylogenetic analysis of the Fusarium avenaceum/F. arthrosporioides/F. tricinctum species complex - A polyphasic approach. Mycol. Res. 106: 655-669.