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Volumn 61, Issue 3, 2011, Pages 646-659

Temporal Dynamics of Bacterial and Fungal Communities in a Genetically Modified (GM) Rice Ecosystem

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CARBON; FUNGAL DNA; QUATERNARY AMMONIUM DERIVATIVE; RIBOSOMAL SPACER DNA; RNA 16S; WATER;

EID: 79953742826     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-010-9776-5     Document Type: Article
Times cited : (37)

References (50)
  • 1
    • 3543138422 scopus 로고    scopus 로고
    • Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques
    • Anderson IC, Cairney JWG (2004) Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques. Environ Microbiol 6: 769-779.
    • (2004) Environ Microbiol , vol.6 , pp. 769-779
    • Anderson, I.C.1    Cairney, J.W.G.2
  • 2
    • 0001587492 scopus 로고
    • Microbial biomass in paddy soil: I. microbial biomass caculated from direct count using fluorescence microscope (in Japanese)
    • Akira H, Shinjiro K, Yasuo T (1984) Microbial biomass in paddy soil: I. microbial biomass caculated from direct count using fluorescence microscope (in Japanese). Soil Sci Plant Nutr 30: 175-187.
    • (1984) Soil Sci Plant Nutr , vol.30 , pp. 175-187
    • Akira, H.1    Shinjiro, K.2    Yasuo, T.3
  • 3
    • 35148853590 scopus 로고    scopus 로고
    • Changes in fungal community composition in response to vegetational succession during the natural regeneration of cutover peatlands
    • Artz RRE, Anderson IC, Chapman SJ, Hagn A, Schloter M, Potts JM, Campbell CD (2007) Changes in fungal community composition in response to vegetational succession during the natural regeneration of cutover peatlands. Microb Ecol 54: 508-522.
    • (2007) Microb Ecol , vol.54 , pp. 508-522
    • Artz, R.R.E.1    Anderson, I.C.2    Chapman, S.J.3    Hagn, A.4    Schloter, M.5    Potts, J.M.6    Campbell, C.D.7
  • 4
    • 27644569345 scopus 로고    scopus 로고
    • Recent advances in rice biotechnology-towards genetically superior transgenic rice
    • Bajaj S, Mohanty A (2005) Recent advances in rice biotechnology-towards genetically superior transgenic rice. Plant Biotech J 3: 275-307.
    • (2005) Plant Biotech J , vol.3 , pp. 275-307
    • Bajaj, S.1    Mohanty, A.2
  • 5
    • 0032732640 scopus 로고    scopus 로고
    • Plant species and nitrogen effects on soil biological properties of temperate upland grasslands
    • Bardgett RD, Mawdsley JL, Edwards S, Hobbs PJ, Rodwell JS, Davies WJ (1999) Plant species and nitrogen effects on soil biological properties of temperate upland grasslands. Func Ecol 13: 650-660.
    • (1999) Func Ecol , vol.13 , pp. 650-660
    • Bardgett, R.D.1    Mawdsley, J.L.2    Edwards, S.3    Hobbs, P.J.4    Rodwell, J.S.5    Davies, W.J.6
  • 6
    • 58149269395 scopus 로고    scopus 로고
    • A culture-independent study of free-living fungi in biological soil crusts of the Colorado Plateau: their diversity and relative contribution to microbial biomass
    • Bates ST, Garcia-Pichel F (2009) A culture-independent study of free-living fungi in biological soil crusts of the Colorado Plateau: their diversity and relative contribution to microbial biomass. Environ Microbiol 11: 56-67.
    • (2009) Environ Microbiol , vol.11 , pp. 56-67
    • Bates, S.T.1    Garcia-Pichel, F.2
  • 7
    • 0036306048 scopus 로고    scopus 로고
    • Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants
    • Berg G, Roskot N, Steidle A, Eberl L, Zock A, Smalla K (2002) Plant-dependent genotypic and phenotypic diversity of antagonistic rhizobacteria isolated from different Verticillium host plants. Appl Environ Microbiol 68: 3328-3338.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3328-3338
    • Berg, G.1    Roskot, N.2    Steidle, A.3    Eberl, L.4    Zock, A.5    Smalla, K.6
  • 8
    • 0036780507 scopus 로고    scopus 로고
    • Bacterial community dynamics across a floristic gradient in a temperate upland grassland ecosystem
    • Brodie E, Edwards S, Clipson N (2002) Bacterial community dynamics across a floristic gradient in a temperate upland grassland ecosystem. Microb Ecol 44: 260-270.
    • (2002) Microb Ecol , vol.44 , pp. 260-270
    • Brodie, E.1    Edwards, S.2    Clipson, N.3
  • 9
    • 0037770278 scopus 로고    scopus 로고
    • Soil fungal community structure in a temperate upland grassland soil
    • Brodie E, Edwards S, Clipson N (2003) Soil fungal community structure in a temperate upland grassland soil. FEMS Microbiol Ecol 45: 105-114.
    • (2003) FEMS Microbiol Ecol , vol.45 , pp. 105-114
    • Brodie, E.1    Edwards, S.2    Clipson, N.3
  • 11
    • 33749370114 scopus 로고    scopus 로고
    • The current status and environmental impacts of glyphosate-resistant crops: a review
    • Cerdeira AL, Duke S (2006) The current status and environmental impacts of glyphosate-resistant crops: a review. J Environ Qual 35: 1633-1658.
    • (2006) J Environ Qual , vol.35 , pp. 1633-1658
    • Cerdeira, A.L.1    Duke, S.2
  • 12
    • 0037388225 scopus 로고    scopus 로고
    • Understanding systematic error in microbial community analysis techniques as a result of ribosomal RNA (rrn) operon copy number
    • Crosby LD, Criddle CS (2003) Understanding systematic error in microbial community analysis techniques as a result of ribosomal RNA (rrn) operon copy number. Biotechniques 34: 790-803.
    • (2003) Biotechniques , vol.34 , pp. 790-803
    • Crosby, L.D.1    Criddle, C.S.2
  • 13
    • 2142802649 scopus 로고    scopus 로고
    • Seasonal changes in the rhizosphere microbial communities associated with field-grown genetically modified canola (Brassica napus)
    • Dunfield KE, Germida JJ (2003) Seasonal changes in the rhizosphere microbial communities associated with field-grown genetically modified canola (Brassica napus). Appl Environ Microbiol 69: 7310-7318.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 7310-7318
    • Dunfield, K.E.1    Germida, J.J.2
  • 14
    • 2442691618 scopus 로고    scopus 로고
    • Impact of genetically modified crops on soil- and plant-associated microbial communities
    • Dunfield KE, Germida JJ (2004) Impact of genetically modified crops on soil- and plant-associated microbial communities. J Environ Qual 33: 806-815.
    • (2004) J Environ Qual , vol.33 , pp. 806-815
    • Dunfield, K.E.1    Germida, J.J.2
  • 15
    • 22144470189 scopus 로고    scopus 로고
    • Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays
    • Fierer N, Jackson JA, Vilgalys R, Jackson RB (2005) Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Appl Environ Microbiol 71: 4117-4120.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4117-4120
    • Fierer, N.1    Jackson, J.A.2    Vilgalys, R.3    Jackson, R.B.4
  • 16
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts
    • Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113-118.
    • (1993) Mol Ecol , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 17
    • 2442654454 scopus 로고    scopus 로고
    • Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens
    • Girvan MS, Bullimore J, Ball AS, Pretty JN, Osborn AM (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Appl Environ Microbiol 70: 2692-2701.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 2692-2701
    • Girvan, M.S.1    Bullimore, J.2    Ball, A.S.3    Pretty, J.N.4    Osborn, A.M.5
  • 19
    • 33845732213 scopus 로고    scopus 로고
    • Varietal effects of eight paired lines of transgenic Bt maize and near-isogenic non-Bt maize on soil microbial and nematode community structure
    • Griffiths BS, Heckmann LH, Caul S, Thompson J, Scrimgeour C, Krogh PH (2007) Varietal effects of eight paired lines of transgenic Bt maize and near-isogenic non-Bt maize on soil microbial and nematode community structure. Plant Biotech J 5: 60-68.
    • (2007) Plant Biotech J , vol.5 , pp. 60-68
    • Griffiths, B.S.1    Heckmann, L.H.2    Caul, S.3    Thompson, J.4    Scrimgeour, C.5    Krogh, P.H.6
  • 20
    • 1642423869 scopus 로고    scopus 로고
    • The relationship between microbial community structure and functional stability, tested experimentally in an upland pasture soil
    • Griffiths BS, Kuan HL, Ritz K, Glover LA, McCaig AE, Fenwick C (2004) The relationship between microbial community structure and functional stability, tested experimentally in an upland pasture soil. Microb Ecol 47: 104-113.
    • (2004) Microb Ecol , vol.47 , pp. 104-113
    • Griffiths, B.S.1    Kuan, H.L.2    Ritz, K.3    Glover, L.A.4    McCaig, A.E.5    Fenwick, C.6
  • 21
    • 0004152299 scopus 로고
    • The fungal dimension of biodiversity: magnitude, significance, and conservation
    • Hawksworth DL (1991) The fungal dimension of biodiversity: magnitude, significance, and conservation. Mycol Res 95: 641-655.
    • (1991) Mycol Res , vol.95 , pp. 641-655
    • Hawksworth, D.L.1
  • 22
    • 47249138288 scopus 로고    scopus 로고
    • Influence of plant developmental stage on microbial community structure and activity in the rhizosphere of three field crops
    • Houlden A, Timms-Wilson TM, Day MJ, Bailey MJ (2008) Influence of plant developmental stage on microbial community structure and activity in the rhizosphere of three field crops. FEMS Microbiol Ecol 65: 193-201.
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 193-201
    • Houlden, A.1    Timms-Wilson, T.M.2    Day, M.J.3    Bailey, M.J.4
  • 23
    • 12244252746 scopus 로고    scopus 로고
    • Expression of a bifunctional fusion of the Escherichia coli genes for trehalose-6-phosphatase in transgenic rice plants increases trehalose accumulation and abiotic stress tolerance without stunting growth
    • Jang I-C, Oh S-J, Seo J-S, Choi W-B, Song SI, Kim CH, Kim YS, Seo H-S, Choi YD, Nahm BH, Kim J-K (2003) Expression of a bifunctional fusion of the Escherichia coli genes for trehalose-6-phosphatase in transgenic rice plants increases trehalose accumulation and abiotic stress tolerance without stunting growth. Plant Physiol 131: 516-524.
    • (2003) Plant Physiol , vol.131 , pp. 516-524
    • Jang, I.-C.1    Oh, S.-J.2    Seo, J.-S.3    Choi, W.-B.4    Song, S.I.5    Kim, C.H.6    Kim, Y.S.7    Seo, H.-S.8    Choi, Y.D.9    Nahm, B.H.10    Kim, J.-K.11
  • 25
    • 0031106985 scopus 로고    scopus 로고
    • Competition for nitrogen between plants and soil microorganisms
    • Kaye JP, Hart SC (1997) Competition for nitrogen between plants and soil microorganisms. Trends Ecol Evol 12: 139-143.
    • (1997) Trends Ecol Evol , vol.12 , pp. 139-143
    • Kaye, J.P.1    Hart, S.C.2
  • 26
    • 4644283131 scopus 로고    scopus 로고
    • Impact of lime, nitrogen and plant species on bacterial community structure in grassland microcosm
    • Kennedy N, Brodie E, Connolly J, Clipson N (2004) Impact of lime, nitrogen and plant species on bacterial community structure in grassland microcosm. Environ Microbiol 6: 1070-1080.
    • (2004) Environ Microbiol , vol.6 , pp. 1070-1080
    • Kennedy, N.1    Brodie, E.2    Connolly, J.3    Clipson, N.4
  • 27
    • 18944375499 scopus 로고    scopus 로고
    • Impact of lime, nitrogen and plant species on fungal community structure in grassland microcosms
    • Kennedy N, Connolly J, Clipson N (2005) Impact of lime, nitrogen and plant species on fungal community structure in grassland microcosms. Environ Microbiol 7: 780-788.
    • (2005) Environ Microbiol , vol.7 , pp. 780-788
    • Kennedy, N.1    Connolly, J.2    Clipson, N.3
  • 28
    • 46449098216 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structure in paddy soils for environenmental risk assessment with two varieties of genetically modified rice, Iksan 483 and Milyang 204
    • Kim M-C, Ahn J-H, Shin H-C, Kim T, Ryu T-H, Kim D-H, Song H-G, Lee GH, Ka J-O (2008) Molecular analysis of bacterial community structure in paddy soils for environenmental risk assessment with two varieties of genetically modified rice, Iksan 483 and Milyang 204. J Microbiol Biotechnol 18: 207-218.
    • (2008) J Microbiol Biotechnol , vol.18 , pp. 207-218
    • Kim, M.-C.1    Ahn, J.-H.2    Shin, H.-C.3    Kim, T.4    Ryu, T.-H.5    Kim, D.-H.6    Song, H.-G.7    Lee, G.H.8    Ka, J.-O.9
  • 29
    • 2442630379 scopus 로고    scopus 로고
    • Fungal diversity in set-aide agricultural soil investigated using terminal-restriction fragment lenght polymorphism
    • Klamer M, Hedlund K (2004) Fungal diversity in set-aide agricultural soil investigated using terminal-restriction fragment lenght polymorphism. Soil Biol Biochem 36: 983-988.
    • (2004) Soil Biol Biochem , vol.36 , pp. 983-988
    • Klamer, M.1    Hedlund, K.2
  • 30
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrant and M. Goodfellow (Eds.), New York: Wiley
    • Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrant E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 31
    • 34447536965 scopus 로고    scopus 로고
    • Alteration of soil rhizobacterial communities following genetic transformation of white spruce
    • LeBlanc PM, Hamelin RC, Filion M (2007) Alteration of soil rhizobacterial communities following genetic transformation of white spruce. Appl Environ Microbiol 73: 4128-4134.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 4128-4134
    • Leblanc, P.M.1    Hamelin, R.C.2    Filion, M.3
  • 34
    • 11244324812 scopus 로고    scopus 로고
    • Microbial diversity in soil: ecological theories, the contribution of molecular techniques and the impact of transgenic plants and transgenic microorganisms
    • Lynch JM, Benedetti A, Insam H, Nuti MP, Smalla K, Torsvik V, Nannipieri P (2004) Microbial diversity in soil: ecological theories, the contribution of molecular techniques and the impact of transgenic plants and transgenic microorganisms. Biol Fertil Soils 40: 363-385.
    • (2004) Biol Fertil Soils , vol.40 , pp. 363-385
    • Lynch, J.M.1    Benedetti, A.2    Insam, H.3    Nuti, M.P.4    Smalla, K.5    Torsvik, V.6    Nannipieri, P.7
  • 36
    • 33144455026 scopus 로고    scopus 로고
    • Only a few fungal species dominate highly diverse mycofloras associated with the common reed
    • Neubert K, Mendgen K, Brinkmann H, Wirsel SG (2006) Only a few fungal species dominate highly diverse mycofloras associated with the common reed. Appl Environ Microbiol 72: 1118-1128.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1118-1128
    • Neubert, K.1    Mendgen, K.2    Brinkmann, H.3    Wirsel, S.G.4
  • 37
    • 34347364528 scopus 로고    scopus 로고
    • Bio-safety assessment of validamycin formulation on bacterial and fungal biomass in soil monitored by real-time PCR
    • Qian H, Hu B, Cao D, Chen W, Xu X, Lu Y (2007) Bio-safety assessment of validamycin formulation on bacterial and fungal biomass in soil monitored by real-time PCR. Bull Environ Contam Toxicol 78: 239-244.
    • (2007) Bull Environ Contam Toxicol , vol.78 , pp. 239-244
    • Qian, H.1    Hu, B.2    Cao, D.3    Chen, W.4    Xu, X.5    Lu, Y.6
  • 38
    • 0028855501 scopus 로고
    • Systematics and the biodiversity crisis
    • Savage JM (1995) Systematics and the biodiversity crisis. Bioscience 45: 673-679.
    • (1995) Bioscience , vol.45 , pp. 673-679
    • Savage, J.M.1
  • 39
    • 33748710445 scopus 로고    scopus 로고
    • Transgenic Bt cotton has no apparent effect on enzymatic activities or functional diversity of microbial communities in rhizosphere soil
    • Shen RF, Cai H, Gong WH (2006) Transgenic Bt cotton has no apparent effect on enzymatic activities or functional diversity of microbial communities in rhizosphere soil. Plant Soil 285: 149-159.
    • (2006) Plant Soil , vol.285 , pp. 149-159
    • Shen, R.F.1    Cai, H.2    Gong, W.H.3
  • 40
    • 0035487320 scopus 로고    scopus 로고
    • Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed
    • Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Kaiser S, Roskot N, Heuer H, Berg G (2001) Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl Environ Microbiol 63: 4742-4751.
    • (2001) Appl Environ Microbiol , vol.63 , pp. 4742-4751
    • Smalla, K.1    Wieland, G.2    Buchner, A.3    Zock, A.4    Parzy, J.5    Kaiser, S.6    Roskot, N.7    Heuer, H.8    Berg, G.9
  • 42
    • 1242322101 scopus 로고    scopus 로고
    • Identification of groups of metabolically-active rhizosphere microorganisms by stable isotope probing of PLFAs
    • Treonis AM, Ostle NJ, Stott AW, Primrose R, Grayston SJ, Ineson P (2004) Identification of groups of metabolically-active rhizosphere microorganisms by stable isotope probing of PLFAs. Soil Biol Biochem 36: 533-537.
    • (2004) Soil Biol Biochem , vol.36 , pp. 533-537
    • Treonis, A.M.1    Ostle, N.J.2    Stott, A.W.3    Primrose, R.4    Grayston, S.J.5    Ineson, P.6
  • 44
    • 20444377291 scopus 로고    scopus 로고
    • Assessment of differences in ascomycete communities in the rhizosphere of field-grown wheat and potato
    • Viebahn M, Veenman C, Wernars K, van Loon LC, Smit E, Bakker PA (2005) Assessment of differences in ascomycete communities in the rhizosphere of field-grown wheat and potato. FEMS Microbiol Ecol 53: 245-253.
    • (2005) FEMS Microbiol Ecol , vol.53 , pp. 245-253
    • Viebahn, M.1    Veenman, C.2    Wernars, K.3    van Loon, L.C.4    Smit, E.5    Bakker, P.A.6
  • 45
    • 35448969307 scopus 로고    scopus 로고
    • Fungal diversity, dominance, and community structure in the rhizosphere of clonal Picea mariana plants throughout nursery production chronosequeces
    • Vujanovic V, Hamelin RC, Bernier L, Vujanovic G, St-Arnaud M (2007) Fungal diversity, dominance, and community structure in the rhizosphere of clonal Picea mariana plants throughout nursery production chronosequeces. Microb Ecol 54: 672-684.
    • (2007) Microb Ecol , vol.54 , pp. 672-684
    • Vujanovic, V.1    Hamelin, R.C.2    Bernier, L.3    Vujanovic, G.4    St-Arnaud, M.5
  • 47
    • 33748693123 scopus 로고    scopus 로고
    • Field released transgenic papaya affects microbial communities and enzyme activities in soil
    • Wei XD, Zou HL, Chu LM, Liao B, Ye CN, Lan CY (2006) Field released transgenic papaya affects microbial communities and enzyme activities in soil. Plant Soil 285: 347-358.
    • (2006) Plant Soil , vol.285 , pp. 347-358
    • Wei, X.D.1    Zou, H.L.2    Chu, L.M.3    Liao, B.4    Ye, C.N.5    Lan, C.Y.6
  • 48
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • New York: Academic Press Inc. M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White (Eds.)
    • White TJ, Bruns TD, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press Inc., New York, pp 315-324.
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-324
    • White, T.J.1    Bruns, T.D.2    Lee, S.3    Taylor, J.W.4
  • 50
    • 34548292938 scopus 로고    scopus 로고
    • Phospholipid fatty acid patterns of microbial communities in paddy soil under different fertilizer treatments
    • Zhang Q-C, Wang GH, Yao H-Y (2007) Phospholipid fatty acid patterns of microbial communities in paddy soil under different fertilizer treatments. J Environ Sci 19: 55-59.
    • (2007) J Environ Sci , vol.19 , pp. 55-59
    • Zhang, Q.-C.1    Wang, G.H.2    Yao, H.-Y.3


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