Genome-wide analysis of gene expression in dendritic cells from rat regenerating liver after partial hepatectomy

Cell Biochemistry and Function

Volumn 29, Issue 3, 2011, Pages 255-264

  Xu, Cunshuan ^a   Chen, Xiaoguang ^a   Chang, Cuifang ^a   Wang, Gaiping ^a   Wang, Wenbo ^a   Zhang, Lianxing ^a   Zhu, Qiushi ^a   Wang, Lei ^a  

^a HENAN NORMAL UNIVERSITY   (China)

Author keywords

Cell isolation; Dendritic cells; Genome wide gene expression; Liver regeneration; Partial hepatectomy

Indexed keywords

CYTOKINE; TRANSCRIPTION FACTOR;

ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; CELL ISOLATION; CELL PROLIFERATION; CONCENTRATION RESPONSE; CONTROLLED STUDY; DENDRITIC CELL; DENSITY GRADIENT CENTRIFUGATION; DETOXIFICATION; DOWN REGULATION; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE FUNCTION; GENETIC ANALYSIS; GENETIC ASSOCIATION; IMMUNE RESPONSE; IMMUNITY; IMMUNOMAGNETIC SEPARATION; INFLAMMATION; LIVER REGENERATION; MICROARRAY ANALYSIS; NONHUMAN; PARTIAL HEPATECTOMY; PRIORITY JOURNAL; RAT; RELIABILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; UPREGULATION;

ANIMALS; ANTIGENS, CD; CELL COUNT; CELL PROLIFERATION; CENTRIFUGATION, DENSITY GRADIENT; DENDRITIC CELLS; DOWN-REGULATION; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENOME; GENOME-WIDE ASSOCIATION STUDY; HEPATECTOMY; IMMUNITY; IMMUNOHISTOCHEMISTRY; IMMUNOMAGNETIC SEPARATION; INFLAMMATION; LIVER; LIVER REGENERATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RATS; RATS, SPRAGUE-DAWLEY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; TIME FACTORS; UP-REGULATION;

RATTUS;

EID: 79953729335     PISSN: 02636484     EISSN: 10990844     Source Type: Journal    
DOI: 10.1002/cbf.1748     Document Type: Article

References (26)

1. Lian ZX, Okada T, He XS, et al. Heterogeneity of dendritic cells in the mouse liver: identification and characterization of four distinct populations. J Immunol 2003; 170: 2323-2330.
2. Xia S, Guo Z, Xu X, et al. Hepatic microenvironment programs hematopoietic progenitor differentiation into regulatory dendritic cells, maintaining liver tolerance. Blood 2008; 112: 3175-3185.
3. Tang LL, Zhang Z, Zheng JS, Sheng JF, Liu KZ. Phenotypic and functional characteristics of dendritic cells derived from human peripheral blood monocytes. J Zhejiang Univ Sci B 2005; 6: 1176-1181.
4. Li L, Li SP, Min J, Zheng L. Hepatoma cells inhibit the differentiation and maturation of dendritic cells and increase the production of regulatory T cells. Immunol Lett 2007; 114: 38-45.
5. Pulendran B, Lingappa J, Kennedy MK, et al. Developmental pathways of dendritic cells in vivo: distinct function, phenotype, and localization of dendritic cell subsets in FLT3 ligand-treated mice. J Immunol 1997; 159: 2222-2231.
6. Del Hoyo GM, Martín P, Vargas HH, et al. Characterization of a common precursor population for dendritic cells. Nature 2002; 415: 1043-1047.
7. Hsu W, Shu SA, Gershwin E, Lian ZX. The current immune function of hepatic dendritic cells. Cell Mol Immunol 2007; 4: 321-328.
8. Castellaneta A, Di Leo A, Francavilla R, et al. Functional modification of CD11c+ liver dendritic cells during liver regeneration after partial hepatectomy in mice. Hepatology 2006; 43: 807-816.
9. Lau AH, Thomson AW. Dendritic cells and immune regulation in the liver. Gut 2003; 52: 307-314.
10. Türeci O, Bian H, Nestle FO, et al. Cascades of transcriptional induction during dendritic cell maturation revealed by genome-wide expression analysis. FASEB J 2003; 17: 836-847.
11. Collins JF. Gene chip analyses reveal differential genetic responses to iron defi{ligature}ciency in rat duodenum and jejunum. Biol Res 2006; 39: 25-37.
12. Higgins GM, Anderson RM. Experimental pathology of the liver: restoration of the liver of the white rat following partial surgical removal. Arch Pathol 1931; 12: 186-202.
13. Tsung A, Zheng N, Jeyabalan G, et al. Increasing numbers of hepatic dendritic cells promote HMGB1-mediated ischemia-reperfusion injury. J Leukoc Biol 2007; 81: 119-128.
14. Xie LF, Wang WB, Wang L, Wang W, Xu CS. Distribution and quantity changes of dentritic cells in rat regenerating liver. J Chongqing Norrnal University (Nat Sci) 2009; 26: 22-26.
15. Gu X, Fu X, Yang Y, Sun T, Jiang L. Expression characteristics of c-fos, c-myc and bFGF in early burn tissue. Chin Med J (Engl) 2001; 114: 925-928.
16. Norton JN. Total RNA isolation by a rapid centrifugation method. Am Biotechnol Lab 1992; 10: 41.
17. Scott RJ. Isolation of whole cell (total) RNA. Method Mol Biol 1995; 49: 197-202.
18. Wang JZ, Du Z, Payattakool R, Yu PS, Chen CF. A new method to measure the semantic similarity of GO terms. Bioinformatics 2007; 23: 1274-1281.
19. Guo WZ, Cai CP, Wang CB, et al. A preliminary analysis of genome structure and composition in Gossypium hirsutum. BMC Genomics 2008; 9: 314.
20. Wang GP, Xu CS. Reference gene selection for real-time rt-PCR in eight kinds of rat regenerating hepatic cells. Mol Biotechnol 2010; 46: 449-457.
21. Liu YJ. Dendritic cell subsets and lineages, and their functions in innate and adaptive immunity. Cell 2001; 106: 259-262.
22. Connolly MK, Bedrosian AS, Mallen-St Clair J. et al. In liver fibrosis, dendritic cells govern hepatic inflammation in mice via TNF-alpha. J Clin Invest 2009; 119: 3213-3225.
23. Chaussabel D, Semnani RT, McDowell MA, et al. Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites. Blood 2003; 102: 672-681.
24. Xu CS, Shao HY, Du B. Study on correlation of signal molecule genes and their receptor-associated genes with rat liver regeneration. Genome 2009; 52: 505-523.
25. Subramanya S, Kim SS, Abraham S, et al. Targeted delivery of small interfering RNA to human dendritic cells to suppress dengue virus infection and associated proinflammatory cytokine production. J Virol 2010; 84: 2490-2501.
26. Su AI, Guidotti LG, Pezacki JP, Chisari FV, Schultz PG. Gene expression during the priming phase of liver regeneration after partial hepatectomy in mice. Proc Natl Acad Sci USA 2002; 99: 11181-11186.