메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

A preliminary analysis of genome structure and composition in Gossypium hirsutum

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CONTROLLED STUDY; COTTON; GENE AMPLIFICATION; GENE DUPLICATION; GENE FREQUENCY; GENE LOCATION; GENE MAPPING; GENE SEQUENCE; GENE STRUCTURE; GENETIC IDENTIFICATION; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENOME ANALYSIS; GOSSYPIUM HIRSUTUM; INTRON; MOLECULAR SIZE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENETICS; RETROPOSON; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SEQUENCE TAGGED SITE; TANDEM REPEAT; UNINDEXED SEQUENCE; BIOLOGICAL MODEL; CHROMOSOME MAP; COMPUTER PROGRAM; DNA SEQUENCE; DUPLICATE GENE; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GENOME; MOLECULAR EVOLUTION; PLANT CHROMOSOME; POLYPLOIDY; RANDOM AMPLIFIED POLYMORPHIC DNA;

EID: 48349123402     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-314     Document Type: Article
Times cited : (100)

References (48)
  • 1
    • 0000113842 scopus 로고
    • A revised taxonomic interpretation of Gossypium L. (Malvaceae)
    • Fryxell PA A revised taxonomic interpretation of Gossypium L. (Malvaceae) Rheedea 1992, 2:108-165.
    • (1992) Rheedea , vol.2 , pp. 108-165
    • Fryxell, P.A.1
  • 2
    • 36148975768 scopus 로고    scopus 로고
    • Polyploidy and the evolutionary history of cotton
    • Wendel JF Cronn RC Polyploidy and the evolutionary history of cotton Adv Agron 2003, 78:139-186.
    • (2003) Adv Agron , vol.78 , pp. 139-186
    • Wendel, J.F.1    Cronn, R.C.2
  • 3
    • 48349143669 scopus 로고    scopus 로고
    • USA
    • National Cotton Council, USA http://www.cotton.org/
  • 4
    • 0032516002 scopus 로고    scopus 로고
    • Polyploid formation created unique avenues for response to selection in Gossypium
    • 22504 9539752
    • Jiang C Wright RJ El-Zik KM Paterson AH Polyploid formation created unique avenues for response to selection in Gossypium Proc Natl Acad Sci USA 1998, 95:4419-4424. 22504 9539752
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 4419-4424
    • Jiang, C.1    Wright, R.J.2    El-Zik, K.M.3    Paterson, A.H.4
  • 5
    • 0034766426 scopus 로고    scopus 로고
    • Molecular mapping and characterization of traits controlling fiber quality in cotton
    • Kohel RJ Yu J Park Y-H Lazo GR Molecular mapping and characterization of traits controlling fiber quality in cotton Euphytica 2001, 121:163-172.
    • (2001) Euphytica , vol.121 , pp. 163-172
    • Kohel, R.J.1    Yu, J.2    Park, Y.-H.3    Lazo, G.R.4
  • 7
    • 0038192363 scopus 로고    scopus 로고
    • QTL analysis of genotype × environmental interactions affecting cotton fiber quality
    • Paterson AH Saranga Y Menz M Jiang CX Wright RJ QTL analysis of genotype × environmental interactions affecting cotton fiber quality Theor ApplGenet 2003, 106:384-396.
    • (2003) Theor ApplGenet , vol.106 , pp. 384-396
    • Paterson, A.H.1    Saranga, Y.2    Menz, M.3    Jiang, C.X.4    Wright, R.J.5
  • 8
    • 15044344960 scopus 로고    scopus 로고
    • Molecularmapping of QTLs for qualities in three diverse lines in Upland cottonusing SSR markers
    • Shen XL Guo WZ Zhu XF Yuan YL Zhang TZ Molecularmapping of QTLs for qualities in three diverse lines in Upland cottonusing SSR markers Mol Breed 2005, 15:169-181.
    • (2005) Mol Breed , vol.15 , pp. 169-181
    • Shen, X.L.1    Guo, W.Z.2    Zhu, X.F.3    Yuan, Y.L.4    Zhang, T.Z.5
  • 9
    • 13844316634 scopus 로고    scopus 로고
    • Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap
    • 15618303
    • Ulloa M Saha S Jenkins JN Meredith WR Jr McCarty JC Jr Stelly DM Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap J Hered 2005, 96:132-144. 15618303
    • (2005) J Hered , vol.96 , pp. 132-144
    • Ulloa, M.1    Saha, S.2    Jenkins, J.N.3    Meredith Jr., W.R.4    McCarty Jr., J.C.5    Stelly, D.M.6
  • 10
    • 0035125079 scopus 로고    scopus 로고
    • Comparative development of fiber in wild and cultivated cotton
    • 11256432
    • Applequist WL Cronn R Wendel JF Comparative development of fiber in wild and cultivated cotton Evol Dev 2001, 3:3-17. 11256432
    • (2001) Evol Dev , vol.3 , pp. 3-17
    • Applequist, W.L.1    Cronn, R.2    Wendel, J.F.3
  • 11
    • 48349127917 scopus 로고    scopus 로고
    • 1 hybrid hypoaneuploid chromosome substitution series
    • 1 hybrid hypoaneuploid chromosome substitution series J Cotton Sci 2006, 10:146-154.
    • (2006) J Cotton Sci , vol.10 , pp. 146-154
    • Saha, S.1    Raska, D.A.2    Stelly, D.M.3
  • 12
    • 33747037492 scopus 로고    scopus 로고
    • Accumulation of genome-specifictranscripts, transcription factors and phytohormonal regulatorsduring early stages of fiber cell development in allotetraploidcotton
    • 16889650
    • Yang SS Cheung F Lee JJ Ha M Wei NE Sze SH Stelly DM Thaxton P Triplett B Town CD Chen JZ Accumulation of genome-specifictranscripts, transcription factors and phytohormonal regulatorsduring early stages of fiber cell development in allotetraploidcotton Plant J 2006, 47:761-775. 16889650
    • (2006) Plant J , vol.47 , pp. 761-775
    • Yang, S.S.1    Cheung, F.2    Lee, J.J.3    Ha, M.4    Wei, N.E.5    Sze, S.H.6    Stelly, D.M.7    Thaxton, P.8    Triplett, B.9    Town, C.D.10    Chen, J.Z.11
  • 14
    • 4444262329 scopus 로고    scopus 로고
    • Incongruent patterns of local and global genome size evolution in cotton
    • 509256 15256507
    • Grover CE Kim HR Wing RA Paterson AH Wendel JF Incongruent patterns of local and global genome size evolution in cotton Genome Res 2004, 14:1474-1482. 509256 15256507
    • (2004) Genome Res , vol.14 , pp. 1474-1482
    • Grover, C.E.1    Kim, H.R.2    Wing, R.A.3    Paterson, A.H.4    Wendel, J.F.5
  • 16
    • 33749389724 scopus 로고    scopus 로고
    • Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
    • 1581434 16954538
    • Hawkins JS Kim H Nason JD Wing RA Wendel JF Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium Genome Res 2006, 16:1252-1261. 1581434 16954538
    • (2006) Genome Res , vol.16 , pp. 1252-1261
    • Hawkins, J.S.1    Kim, H.2    Nason, J.D.3    Wing, R.A.4    Wendel, J.F.5
  • 17
    • 48349101812 scopus 로고    scopus 로고
    • U.S. Department of Energy Joint Genome Institutes
    • U.S. Department of Energy Joint Genome Institutes http://www.jgi.doe.gov/
  • 18
    • 34250302727 scopus 로고    scopus 로고
    • Microcolinearity and genome evolution in the AdhA region of diploid and polyploidy cotton (Gossypium)
    • 17461788
    • Grover CE Kim HR Wing RA Paterson AH Wendel JF Microcolinearity and genome evolution in the AdhA region of diploid and polyploidy cotton (Gossypium) Plant J 2007, 50:995-1006. 17461788
    • (2007) Plant J , vol.50 , pp. 995-1006
    • Grover, C.E.1    Kim, H.R.2    Wing, R.A.3    Paterson, A.H.4    Wendel, J.F.5
  • 20
    • 30044440641 scopus 로고    scopus 로고
    • Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat
    • 1323192 16357197
    • Devos KM Ma J Pontaroli AC Pratt LH Bennetzen JL Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat Proc Natl Acad Sci USA 2005, 102:19243-19248. 1323192 16357197
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 19243-19248
    • Devos, K.M.1    Ma, J.2    Pontaroli, A.C.3    Pratt, L.H.4    Bennetzen, J.L.5
  • 22
    • 48349091130 scopus 로고    scopus 로고
    • NCBI http://www.ncbi.nlm.nih.gov
  • 23
    • 0036959107 scopus 로고    scopus 로고
    • Organization, expression and evolution of a disease resistance gene cluster in soybean
    • 1462381 12524363
    • Graham MA Marek LF Shoemarker RC Organization, expression and evolution of a disease resistance gene cluster in soybean Genetics 2002, 162:1961-1977. 1462381 12524363
    • (2002) Genetics , vol.162 , pp. 1961-1977
    • Graham, M.A.1    Marek, L.F.2    Shoemarker, R.C.3
  • 24
    • 39149142567 scopus 로고    scopus 로고
    • Molecular mapping of QTL for Verticillium wilt resistance in G. barbadense L
    • Yang C Guo WZ Zhang TZ Molecular mapping of QTL for Verticillium wilt resistance in G. barbadense L Plant Sci 2008, 174:290-298.
    • (2008) Plant Sci , vol.174 , pp. 290-298
    • Yang, C.1    Guo, W.Z.2    Zhang, T.Z.3
  • 25
    • 34447283003 scopus 로고    scopus 로고
    • A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium
    • 1893075 17409069
    • Guo W Cai C Wang C Han Z Song X Wang K Niu X Wang C Lu K Shi B et al.: A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium Genetics 2007, 176:527-541. 1893075 17409069
    • (2007) Genetics , vol.176 , pp. 527-541
    • Guo, W.1    Cai, C.2    Wang, C.3    Han, Z.4    Song, X.5    Wang, K.6    Niu, X.7    Wang, C.8    Lu, K.9    Shi, B.10
  • 26
    • 85047683189 scopus 로고    scopus 로고
    • Cotton fiber growth in planta and in vitro: Models for plant cell elongation and cell wall biogenesis
    • 1540163 11743074
    • Kim HJ Triplett BA Cotton fiber growth in planta and in vitro: Models for plant cell elongation and cell wall biogenesis Plant Physiol 2001, 127:1361-1366. 1540163 11743074
    • (2001) Plant Physiol , vol.127 , pp. 1361-1366
    • Kim, H.J.1    Triplett, B.A.2
  • 28
    • 0032413101 scopus 로고    scopus 로고
    • Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
    • SanMiguel P Bennetzen JL Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons Ann Bot (Lond) 1998, 82:37-44.
    • (1998) Ann Bot (Lond) , vol.82 , pp. 37-44
    • SanMiguel, P.1    Bennetzen, J.L.2
  • 29
    • 0033178886 scopus 로고    scopus 로고
    • Intron-exon structure of eukaryotic model organisms
    • 148551 10454621
    • Deutsch M Long M Intron-exon structure of eukaryotic model organisms Nucleic Acids Res 1999, 27:3219-3228. 148551 10454621
    • (1999) Nucleic Acids Res , vol.27 , pp. 3219-3228
    • Deutsch, M.1    Long, M.2
  • 30
    • 0036478903 scopus 로고    scopus 로고
    • Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes
    • 11799393
    • Morgante M Hanafey M Powell W Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes Nat Genet 2002, 30:194-200. 11799393
    • (2002) Nat Genet , vol.30 , pp. 194-200
    • Morgante, M.1    Hanafey, M.2    Powell, W.3
  • 31
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • 10688139
    • Wendel JF Genome evolution in polyploids Plant Mol Biol 2000, 42:225-249. 10688139
    • (2000) Plant Mol Biol , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 32
    • 0037500141 scopus 로고    scopus 로고
    • Evolution by gene duplication: An update
    • Zhang J Evolution by gene duplication: An update Trends Ecol Evol 2003, 18:292-298.
    • (2003) Trends Ecol Evol , vol.18 , pp. 292-298
    • Zhang, J.1
  • 33
    • 0344719444 scopus 로고    scopus 로고
    • Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus
    • 14615181
    • Adams KL Palmer JD Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus Mol Phylogenet Evol 2003, 29:380-395. 14615181
    • (2003) Mol Phylogenet Evol , vol.29 , pp. 380-395
    • Adams, K.L.1    Palmer, J.D.2
  • 34
    • 0036097982 scopus 로고    scopus 로고
    • Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium)
    • 11961094
    • Small RL Wendel JF Differential evolutionary dynamics of duplicated paralogous Adh loci in allotetraploid cotton (Gossypium) Mol Biol Evol 2002, 19:597-607. 11961094
    • (2002) Mol Biol Evol , vol.19 , pp. 597-607
    • Small, R.L.1    Wendel, J.F.2
  • 35
    • 0032901959 scopus 로고    scopus 로고
    • Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.)
    • 10331275
    • Small RL Ryburn JA Wendel JF Low levels of nucleotide diversity at homoeologous Adh loci in allotetraploid cotton (Gossypium L.) Mol Biol Evol 1999, 16:491-501. 10331275
    • (1999) Mol Biol Evol , vol.16 , pp. 491-501
    • Small, R.L.1    Ryburn, J.A.2    Wendel, J.F.3
  • 36
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
    • 311097 11483586
    • Temnykh S DeClerck G Lukashova A Lipovich L Cartinhour S McCouch S Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential Genome Res 2001, 11:1441-52. 311097 11483586
    • (2001) Genome Res , vol.11 , pp. 1441-1452
    • Temnykh, S.1    DeClerck, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.6
  • 37
    • 33748862203 scopus 로고    scopus 로고
    • Characterization, development and exploitation of EST-derived microsatellites in Gossypium raimondii Ulbrich
    • Wang CB Guo WZ Cai CP Zhang TZ Characterization, development and exploitation of EST-derived microsatellites in Gossypium raimondii Ulbrich Chin Sci Bull 2006, 51:557-561.
    • (2006) Chin Sci Bull , vol.51 , pp. 557-561
    • Wang, C.B.1    Guo, W.Z.2    Cai, C.P.3    Zhang, T.Z.4
  • 38
    • 48349098329 scopus 로고    scopus 로고
    • Primer3.0 http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi
  • 39
    • 48349095555 scopus 로고    scopus 로고
    • Repeatmasker http://www.repeatmasker.org
  • 40
    • 0030094146 scopus 로고    scopus 로고
    • CENSOR - A program for identification and elimination of repetitive elements from DNA sequences
    • 8867843
    • Jurka J Klonowski P Dagman V Pelton P CENSOR - a program for identification and elimination of repetitive elements from DNA sequences Comput Chem 1996, 20:119-121. 8867843
    • (1996) Comput Chem , vol.20 , pp. 119-121
    • Jurka, J.1    Klonowski, P.2    Dagman, V.3    Pelton, P.4
  • 41
    • 0034284437 scopus 로고    scopus 로고
    • Repbase Update: A database and an electronic journal of repetitive elements
    • Jurka J Repbase Update: A database and an electronic journal of repetitive elements Trends Genet 2000, 9:418-420.
    • (2000) Trends Genet , vol.9 , pp. 418-420
    • Jurka, J.1
  • 42
    • 48349139156 scopus 로고    scopus 로고
    • LTR_finder software http://tlife.fudan.edu.cn/ltr_finder
  • 43
    • 48349122024 scopus 로고    scopus 로고
    • FGENESH
    • FGENESH http://www.softberry.com
  • 44
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • 9149143
    • Burge C Karlin S Prediction of complete gene structures in human genomic DNA J Mol Biol 1997, 268:78-94. 9149143
    • (1997) J Mol Biol , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 45
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.hmm: New solutions for gene finding
    • 147337 9461475
    • Lukashin A Borodovsky M GeneMark.hmm: New solutions for gene finding Nucleic Acids Res 1998, 26:1107-1115. 147337 9461475
    • (1998) Nucleic Acids Res , vol.26 , pp. 1107-1115
    • Lukashin, A.1    Borodovsky, M.2
  • 48
    • 48349122694 scopus 로고    scopus 로고
    • UniProt Gene Ontology http://www.geneontology.org/ GO.current.annotations.shtml


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.