Defining entities in the Acacia saligna (Fabaceae) species complex using a population genetics approach

Australian Journal of Botany

Volumn 59, Issue 2, 2011, Pages 137-148

  Millar, M A ^a   Byrne, M ^a   O'Sullivan, W ^b  

^a Crop Variety Testing Group   (Australia)

^b City West Lotteries House   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

AGROFORESTRY; BAYESIAN ANALYSIS; GENETIC STRUCTURE; INVASIVE SPECIES; LEGUME; MORPHOLOGY; SPECIES DIVERSITY; TAXONOMY;

AUSTRALIA;

ACACIA; ACACIA SALIGNA; FABACEAE;

EID: 79953310551     PISSN: 00671924     EISSN: None     Source Type: Journal    
DOI: 10.1071/BT10327     Document Type: Article

References (39)

1. Anderson E, Thompson E (2002) A model based method for identifying species hybrids using multilocus genetic data. Genetics 160, 1217-1229. (Pubitemid 34263481)
2. Broadhurst L, Byrne M, Craven L, LepschiB(2004) Genetic congruence with new species boundaries in the Melaleuca uncinata complex (Myrtaceae). Australian Journal of Botany 52, 729-737. doi:10.1071/BT04073 (Pubitemid 40199091)
3. Burgman MA (1985) Cladistics, phenetics and biogeography of populations of Boronia inornata Turcz. (Rutaceae) and the Eucalyptus diptera Andrews (Myrtaceae) species complex in Western Australia. Australian Journal of Botany 33, 419-431. doi:10.1071/BT9850419 (Pubitemid 17245926)
4. Byrne M, Hines B (2004) Phylogeographical analysis of cpDNA variation in Eucalyptus loxophleba (Myrtaceae). Australian Journal of Botany 52, 459-470. doi:10.1071/BT03117 (Pubitemid 39175384)
5. Byrne M, MacDonald B, Coates D (2002) Phylogeographical patterns in chloroplast DNA variation within the Acacia acuminata (Leguminoseae: Mimosiodeae) complex in Western Australia. Journal of Evolutionary Biology 15, 576-587. doi:10.1046/j.1420-9101.2002.00429.x (Pubitemid 34763132)
6. Byrne M, MacDonald B, Brand J (2003) Phylogeography and divergence in the chloroplast genome of Western Australian Sandalwood (Santalum spicatum). Heredity 91, 389-395. doi:10.1038/sj.hdy.6800346 (Pubitemid 37274426)
7. Byrne M, Yeates D, Joseph L, Kearney M, Bowler J, Williams MAJ, Cooper S, Donnellan SC, Keogh JS, Leys R, Melville J, Murphy DJ, Porch N, Wyrwoll K-H (2008) Birth of a biome: Insights into the assembly and maintenance of the Australian arid zone biota. Molecular Ecology 17, 4398-4417. doi:10.1111/j.1365-294X.2008.03899.x
8. Chen C, Durand E, Forbes F, Francois O (2007) Bayesian clustering algorithms ascertaining spatial population structure: A new computer program and a comparison study. Molecular Ecology Notes 7, 747-756. doi:10.1111/j.1471- 8286.2007.01769.x (Pubitemid 47329398)
9. Coates DJ, Carstairs S, Hamley VL (2003) Evolutionary patterns and genetic structure in localized and widespread species in the Stylidium caricifolium complex (Stylidiaceae). American Journal of Botany 90, 997-1008. doi:10.3732/ajb.90.7.997 (Pubitemid 36914620)
10. Corander J, Marttinen P (2006) Bayesian identification of admixture events using multilocus molecular markers. Molecular Ecology 15, 2833-2843. doi:10.1111/j.1365-294X.2006.02994.x (Pubitemid 44215457)
11. Craven L, Lepschi BJ, Broadhurst L, ByrneM(2004) Taxonomic revision of the broombush complex in Western Australia (Myrtaceae, Melaleuca uncinata s.l.). Australian Systematic Botany 17, 255-271. doi:10.1071/SB04001 (Pubitemid 38908446)
12. Dobzhansky T (1937) 'Genetics and the origins of species.' (Columbia University Press: New York)
13. Duminil J, Caron H, Scotti I, Saint-Omer C, Petit J (2006) Blind population genetics survey of tropical rainforest trees. Molecular Ecology 15, 3505-3513. doi:10.1111/j.1365-294X.2006.03040.x (Pubitemid 44564264)
14. Earl D (2009) Structure Harvester version 0.56.3. Available at http://users. soe.ucsc.edu/~deral/software/struct-harvest/ [Last accessed 24 May 2010]
15. Elliott CP, ByrneM(2004) Phylogenetics and the conservation of rare taxa in the Eucalyptus angustissima complex in Western Australia. Conservation Genetics 5, 39-47. doi:10.1023/B:COGE.0000014063.56405.93 (Pubitemid 38285735)
16. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Molecular Ecology 14, 2611-2620. doi:10.1111/j.1365-294X.2005.02553.x (Pubitemid 40886055)
17. Fox JED (1995) A review of the ecological characteristics of Acacia saligna (Labill.) H.Wendl. Mulga Research Centre Journal 12, 39-55.
18. Francois O, Ancelet S, Guillot G (2006) Bayesian clustering using hidden Markov random fields in spatial population genetics. Genetics 174, 805-816. doi:10.1534/genetics.106.059923 (Pubitemid 44656469)
19. George N, Byrne M, Maslin B, Yan G (2006) Genetic differentiation among morphological variants of Acacia saligna (Mimosaceae). Tree Genetics& Genomes 2, 109-119. doi:10.1007/s11295-006-0034-4 (Pubitemid 44197969)
20. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices. Available at http://www2.unil.ch/popgen/softwares/ fstat.htm [Last accessed 5 February 2002]
21. Hopper S (2009) OCBIL theory: Towards an integrated understanding of the evolution, ecology and conservation of biodiversity on old, climatically buffered infertile landscapes. Plant and Soil 322, 49-86. doi:10.1007/s11104- 009-0068-0
22. Hopper S, Gioia P (2004) The southwest Australian floristic region: Evolution and conservation of a global hot spot of biodiversity. Annual Review of Ecology Evolution and Systematics 35, 623-650. doi:10.1146/annurev.ecolsys. 35.112202.130201 (Pubitemid 40059733)
23. Hopper SD (1979) Biogeographical aspects of speciation in the southwest Australian flora. Annual Review of Systematics and Ecology 10, 399-422. doi:10.1146/annurev.es.10.110179.002151
24. Latch EK, Dharmarajan D, Glaubitz JC, Rhodes OE Jr (2006) Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conservation Genetics 7, 295-302. doi:10.1007/s10592-005-9098-1 (Pubitemid 43873283)
25. Mallet J (1995) A species definition for the modern synthesis. Trends in Ecology & Evolution 10, 294-299. doi:10.1016/0169-5347(95)90031-4
26. Manel S, Gaggiotti OE, Waples RS (2005) Assignment methods: Matching biological questions with appropriate techniques. Trends in Ecology & Evolution 20, 136-142. doi:10.1016/j.tree.2004.12.004 (Pubitemid 40257094)
27. Maslin B, McDonald M (2004) AcaciaSearch: Evaluation of Acacia as a woody crop option for southern Australia. Rural Industries and Research Development Corporation, Publication Number 03/017, Canberra.
28. Maslin BR, McDonaldMW,O'SullivanW(2006) Acacia saligna (Coojong). Available at http://www.worldwidewattle.com/infogallery/projects/ saligna.php [Last accessed 1 May 2010]
29. Mayr E (1942) 'Systematics and the origin of species from the viewpoint of a zoologist.' (Colombia University Press: New York)
30. Millar MA, Byrne M (2007) Characterisation of polymorphic microsatellite DNA markers for Acacia saligna (Labill.) H.L.Wendl. (Mimosaceae). Molecular Ecology Notes 7, 1372-1374. doi:10.1111/j.1471-8286.2007.01890.x (Pubitemid 350059277)
31. Millar MA, Byrne M, Nuberg I, Sedgley M (2008a) High outcrossing and random pollen dispersal in a planted stand of Acacia saligna subsp. 'saligna' revealed by paternity analysis using microsatellites. Tree Genetics & Genomes 4, 367-377. doi:10.1007/s11295-007-0115-z (Pubitemid 351713105)
32. Millar MA, Byrne M, Nuberg I, Sedgley M (2008b) A rapid PCR based diagnostic test for the identification of subspecies of Acacia saligna. Tree Genetics & Genomes 4, 625-635. doi:10.1007/s11295-008-0138-0
33. Myers N, Mittermeier R, Mittermeier C, da Fonseca G, Kent J (2000) Biodiversity hotspots for conservation priorities. Nature 403, 853-858. doi:10.1038/35002501 (Pubitemid 30130979)
34. Peakall R, Smouse P (2006) GenAlEx 6: Genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 288-295. doi:10.1111/j.1471-8286.2005.01155.x (Pubitemid 43373825)
35. Piry S, Luikart G, Cournet J (1999) Bottleneck: A computer program for detecting recent reductions in the effective population size using allele frequency data. The Journal of Heredity 90, 502-503. doi:10.1093/jhered/90.4.502 (Pubitemid 29416458)
36. Piry S, Alapetite A, Cornuet J, Paetkau D, Baudouin L, Estoup A (2004) GENECLASS2: A software for genetic assignment and first generation migrant detection. The Journal of Heredity 95, 536-539. doi:10.1093/jhered/esh074 (Pubitemid 39383165)
37. Pritchard J, Stephens M, Donnely P (2000) Inference of population structure using multilocus genotype data. Genetics 155, 945-959. (Pubitemid 30397141)
38. Raymond M, Rousset F (1995) GENEPOP (version 3.4): Population genetics software for exact test and ecumenicism. The Journal of Heredity 86, 248-249.
39. Yelenik SG, Stock WD, Richardson DM (2004) Ecosystem level impacts of invasive Acacia saligna in the South African Fynbos. Restoration Ecology 12, 44-51. doi:10.1111/j.1061-2971.2004.00289.x (Pubitemid 38546858)