Erratum: Ubiquitin-specific protease 4 is inhibited by its ubiquitin-like domain by MP Luna-Vargas, AC Faesen, WJ van Dijk, M Rape, A Fish, TK Sixma (EMBO Reports (2011) 12 (365-372) DOI: 10.1038/embor.2011.33);Ubiquitin-specific protease 4 is inhibited by its ubiquitin-like domain

EMBO Reports

Volumn 12, Issue 4, 2011, Pages 365-372

  Luna Vargas, Mark P A ^a   Faesen, Alex C ^a   Van Dijk, Willem J ^a   Rape, Michael ^b   Fish, Alexander ^a   Sixma, Titia K ^a  

^a NETHERLANDS CANCER INSTITUTE   (Netherlands)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

regulation; structure; Ubl; USP4

Indexed keywords

UBIQUITIN; UBIQUITIN PROTEIN LIGASE; UBIQUITIN SPECIFIC PROTEASE 4; UNCLASSIFIED DRUG;

ARTICLE; AUTOREGULATION; BINDING COMPETITION; BINDING SITE; COMPETITIVE INHIBITION; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME INHIBITION; ENZYME STRUCTURE; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; UBIQUITINATION;

EID: 79953296816     PISSN: 1469221X     EISSN: 14693178     Source Type: Journal    
DOI: 10.1002/embr.201470010     Document Type: Erratum

References (32)

1. Amerik AY, Hochstrasser M (2004) Mechanism and function of deubiquitinating enzymes. Biochim Biophys Acta 1695: 189-207 (Pubitemid 39574973)
2. Avvakumov GV, Walker JR, Xue S, Finerty PJ Jr, Mackenzie F, Newman EM, Dhe-Paganon S (2006) Amino-terminal dimerization, NRDP1-rhodanese interaction, and inhibited catalytic domain conformation of the ubiquitin-specific protease 8 (USP8). J Biol Chem 281: 38061-38070 (Pubitemid 46042109)
3. Burroughs AM, Balaji S, Iyer LM, Aravind L (2007) Small but versatile: the extraordinary functional and structural diversity of the b-grasp fold. Biol Direct 2: 18
4. Copeland RA (2000) Enzymes: A Practical Introduction to Structure, Mechanism and Data Analysis, pp 270-290, UK: Wiley
5. Deshaies RJ, Joazeiro CA (2009) RING domain E3 ubiquitin ligases. Annu Rev Biochem 78: 399-434
6. Gray DA, Inazawa J, Gupta K, Wong A, Ueda R, Takahashi T (1995) Elevated expression of Unph, a proto-oncogene at 3p21.3, in human lung tumors. Oncogene 10: 2179-2183
7. Gupta K, Copeland NG, Gilbert DJ, Jenkins NA, Gray DA (1993) Unp, a mouse gene related to the tre oncogene. Oncogene 8: 2307-2310 (Pubitemid 23226968)
8. Hochstrasser M (2009) Origin and function of ubiquitin-like proteins. Nature 458: 422-429
9. Hoeller D, Dikic I (2009) Targeting the ubiquitin system in cancer therapy. Nature 456: 438-444
10. Hu M, Li P, Li M, Li W, Yao T, Wu JW, Gu W, Cohen RE, Shi Y (2002) Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde. Cell 111: 1041-1054 (Pubitemid 36050118)
11. Hu M, Li P, Song L, Jeffrey PD, Chenova TA, Wilkinson KD, Cohen RE, Shi Y (2005) Structure and mechanisms of the proteasome-associated deubiquitinating enzyme USP14. EMBO J 24: 3747-3756 (Pubitemid 41581691)
12. Kiel C, Serrano L (2006) The ubiquitin domain superfold: structure-based sequence alignments and characterization of binding epitopes. J Mol Biol 355: 821-844 (Pubitemid 41817639)
13. Köhler A, Zimmerman E, Schneider M, Hurt E, Zheng N (2010) Structural basis for assembly and activation of the heterotetrameric SAGA histone H2B deubiquitinase module. Cell 141: 606-617
14. Komander D, Clague MJ, Urbe S (2009) Breaking the chains: structure and function of the deubiquitinases. Nat Rev Mol Cell Biol 10: 550-563
15. Krissinel E, Henrick K (2004) Secondary-structure matching (ssm), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D Biol Crystallogr 60: 2256-2268 (Pubitemid 41742778)
16. Lopez-Otin C, Hunter T (2010) The regulatory crosstalk between kinases and proteases in cancer. Nat Rev Cancer 10: 278-292
17. May MJ, Larsen SE, Shim JH, Madge LA, Ghosh S (2004) A novel ubiquitin-like domain in IkB kinase b is required for functional activity of the kinase. J Biol Chem 279: 45528-45539 (Pubitemid 39491539)
18. Milojevic T, Reiterer V, Stefan E, Korkhov VM, Dorostkar MM, Ducza E, Ogris E, Boehm S, Freissmuth M, Nanoff C (2006) The ubiquitin-specific protease Usp4 regulates the cell surface level of the A2A receptor. Mol Pharmacol 69: 1083-1094
19. Nijman SM, Luna-Vargas MP, Velds A, Brummelkamp TR, Dirac AM, Sixma TK, Bernards R (2005) A genomic and functional inventory of deubiquitinating enzymes. Cell 123: 773-786 (Pubitemid 41721026)
20. Pickart CM (2004) Back to the future with ubiquitin. Cell 116: 181-190 (Pubitemid 38167311)
21. Quesada V, Diaz-Perales A, Gutierrez-Fernandez A, Garabaya C, Cal S, Lopez-Otin C (2004) Cloning and enzymatic analysis of 22 novel human ubiquitin-specific proteases. Biochem Biophys Res Commun 314: 54-62 (Pubitemid 38058368)
22. Raasi S, Pickart CM (2005) Ubiquitin chains synthesis. Methods Mol Biol 301: 47-55
23. Renatus M et al (2006) Structural basis of ubiquitin recognition by the deubiquitinating protease USP2. Structure 14: 1293-1302 (Pubitemid 44176373)
24. Sakata E et al (2003) Parkin binds the Rpn10 subunit of 26S proteasomes through its ubiquitin-like domain. EMBO Rep 4: 301-306 (Pubitemid 36511728)
25. Samara NL, Datta AB, Berndsen CE, Zhang X, Yao T, Cohen RE, Wolberger C (2010) Structural insights into the assembly and function of the SAGA deubiquitinating module. Science 328: 1025-1029
26. Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome. Genes Dev 24: 1434-1447
27. Sowa ME, Bennett EJ, Gygi SP, Harper JW (2009) Defining the human deubiquitinating enzyme interaction landscape. Cell 138: 389-403
28. Sumimoto H, Kamakura S, Ito T (2007) Structure and function of the PB1 domain, a protein interaction module conserved in animals, fungi, amoebas, and plants. Sci STKE 2007: re6
29. Terasawa H, Noda Y, Ito T, Hatanaka H, Ichikawa S, Ogura K, Sumimoto H, Inagaki F (2001) Structure and ligand recognition of the PB1 domain: a novel protein module binding to the PC motif. EMBOJ 20: 3947-3956 (Pubitemid 32751811)
30. van Leuken RJ, Luna-Vargas MP, Sixma TK, Wolthuis RM, Medema RH (2008) Usp39 is essential for mitotic spindle checkpoint integrity and controls mRNA-levels of aurora B. Cell Cycle 7: 2710-2719
31. Zhao B, Schlesiger C, Masucci MG, Lindsten K (2009) The ubiquitin specific protease 4 (Usp4) is a new player in the Wnt signaling pathway. J Cell Mol Med 13:1886-1895
32. Zhu X, Menard R, Sulea T (2007) High incidence of ubiquitin-like domains in human ubiquitin-specific proteases. Proteins 69: 1-7 (Pubitemid 47339134)