Identification of a cryptic prokaryotic promoter within the cDNA encoding the 5′ end of dengue virus RNA genome

PLoS ONE

Volumn 6, Issue 3, 2011, Pages

  Li, Dongsheng ^a   Aaskov, John ^a   Lott, William B ^a  

^a QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA; VIRUS RNA; COMPLEMENTARY DNA; VIRUS PROTEIN;

5' UNTRANSLATED REGION; ARTICLE; CONTROLLED STUDY; DENGUE VIRUS; DNA SEQUENCE; ESCHERICHIA COLI; EXPRESSION VECTOR; GENE INDUCTION; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PROKARYOTIC CELL; PROMOTER REGION; PROTEIN EXPRESSION; SEQUENCE ANALYSIS; START CODON; TRANSCRIPTION INITIATION SITE; TRANSLATION INITIATION; VIRUS CAPSID; VIRUS GENOME; GENETICS; METABOLISM;

BACTERIA (MICROORGANISMS); DENGUE VIRUS; FLAVIVIRUS; PROKARYOTA; RNA VIRUSES;

DENGUE VIRUS; DNA, COMPLEMENTARY; ESCHERICHIA COLI; PROMOTER REGIONS, GENETIC; RNA, VIRAL; VIRAL PROTEINS;

EID: 79953295798     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0018197     Document Type: Article

References (31)

1. Gubler DJ, (2002) Epidemic dengue/dengue hemorrhagic fever as a public health, social and economic problem in the 21st century. Trends Microbiol 10: 100-103.
2. Rigau-Perez JG, Clark GG, Gubler DJ, Reiter P, Sanders EJ, et al. (1998) Dengue and dengue haemorrhagic fever. Lancet 352: 971-977.
3. Avirutnan P, Punyadee N, Noisakran S, Komoltri C, Thiemmeca S, et al. (2006) Vascular leakage in severe dengue virus infections: a potential role for the nonstructural viral protein NS1 and complement. J Infect Dis 193: 1078-1088.
4. Huang KJ, Yang YC, Lin YS, Huang JH, Liu HS, et al. (2006) The dual-specific binding of dengue virus and target cells for the antibody-dependent enhancement of dengue virus infection. J Immunol 176: 2825-2832.
5. Ruggli N, Rice CM, (1999) Functional cDNA clones of the Flaviviridae: strategies and applications. Adv Virus Res 53: 183-207.
6. Rice CM, Grakoui A, Galler R, Chambers TJ, (1989) Transcription of infectious yellow fever RNA from full-length cDNA templates produced by in vitro ligation. New Biol 1: 285-296.
7. Gualano RC, Pryor MJ, Cauchi MR, Wright PJ, Davidson AD, (1998) Identification of a major determinant of mouse neurovirulence of dengue virus type 2 using stably cloned genomic-length cDNA. J Gen Virol 79 (Pt 3): 437-446.
8. Pierro DJ, Salazar MI, Beaty BJ, Olson KE, (2006) Infectious clone construction of dengue virus type 2, strain Jamaican 1409, and characterization of a conditional E6 mutation. J Gen Virol 87: 2263-2268.
9. Polo S, Ketner G, Levis R, Falgout B, (1997) Infectious RNA transcripts from full-length dengue virus type 2 cDNA clones made in yeast. J Virol 71: 5366-5374.
10. Suzuki R, de Borba L, Duarte dos Santos CN, Mason PW, (2007) Construction of an infectious cDNA clone for a Brazilian prototype strain of dengue virus type 1: characterization of a temperature-sensitive mutation in NS1. Virology 362: 374-383.
11. Sumiyoshi H, Hoke CH, Trent DW, (1992) Infectious Japanese encephalitis virus RNA can be synthesized from in vitro-ligated cDNA templates. J Virol 66: 5425-5431.
12. Yamshchikov VF, Wengler G, Perelygin AA, Brinton MA, Compans RW, (2001) An infectious clone of the West Nile flavivirus. Virology 281: 294-304.
13. Bulich R, Aaskov JG, (1992) Nuclear localization of dengue 2 virus core protein detected with monoclonal antibodies. J Gen Virol 73 (Pt 11): 2999-3003.
14. Kozak M, Shatkin AJ, (1978) Migration of 40 S ribosomal subunits on messenger RNA in the presence of edeine. J Biol Chem 253: 6568-6577.
15. Clyde K, Kyle JL, Harris E, (2006) Recent advances in deciphering viral and host determinants of dengue virus replication and pathogenesis. J Virol 80: 11418-11431.
16. Ma L, Jones CT, Groesch TD, Kuhn RJ, Post CB, (2004) Solution structure of dengue virus capsid protein reveals another fold. Proc Natl Acad Sci U S A 101: 3414-3419.
17. Lai CJ, Zhao BT, Hori H, Bray M, (1991) Infectious RNA transcribed from stably cloned full-length cDNA of dengue type 4 virus. Proc Natl Acad Sci U S A 88: 5139-5143.
18. Rossi SL, Zhao Q, O'Donnell VK, Mason PW, (2005) Adaptation of West Nile virus replicons to cells in culture and use of replicon-bearing cells to probe antiviral action. Virology 331: 457-470.
19. Antonucci TK, Wen P, Rutter WJ, (1989) Eukaryotic promoters drive gene expression in Escherichia coli. J Biol Chem 264: 17656-17659.
20. Mishin VP, Cominelli F, Yamshchikov VF, (2001) A 'minimal' approach in design of flavivirus infectious DNA. Virus Res 81: 113-123.
21. Kapoor M, Zhang L, Mohan PM, Padmanabhan R, (1995) Synthesis and characterization of an infectious dengue virus type-2 RNA genome (New Guinea C strain). Gene 162: 175-180.
22. Nakagawa S, Niimura Y, Miura K, Gojobori T, (2010) Dynamic evolution of translation initiation mechanisms in prokaryotes. Proc Natl Acad Sci U S A 107: 6382-6387.
23. Shine J, Dalgarno L, (1975) Determinant of cistron specificity in bacterial ribosomes. Nature 254: 34-38.
24. Boni IV, Isaeva DM, Musychenko ML, Tzareva NV, (1991) Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1. Nucleic Acids Res 19: 155-162.
25. Komarova AV, Tchufistova LS, Dreyfus M, Boni IV, (2005) AU-rich sequences within 5' untranslated leaders enhance translation and stabilize mRNA in Escherichia coli. J Bacteriol 187: 1344-1349.
26. Udagawa T, Shimizu Y, Ueda T, (2004) Evidence for the translation initiation of leaderless mRNAs by the intact 70 S ribosome without its dissociation into subunits in eubacteria. J Biol Chem 279: 8539-8546.
27. Chiu WW, Kinney RM, Dreher TW, (2005) Control of translation by the 5'- and 3'-terminal regions of the dengue virus genome. J Virol 79: 8303-8315.
28. Edgil D, Polacek C, Harris E, (2006) Dengue virus utilizes a novel strategy for translation initiation when cap-dependent translation is inhibited. J Virol 80: 2976-2986.
29. Weiss DS, Chen JC, Ghigo JM, Boyd D, Beckwith J, (1999) Localization of FtsI (PBP3) to the septal ring requires its membrane anchor, the Z ring, FtsA, FtsQ, and FtsL. J Bacteriol 181: 508-520.
30. Liu WJ, Chen HB, Khromykh AA, (2003) Molecular and functional analyses of Kunjin virus infectious cDNA clones demonstrate the essential roles for NS2A in virus assembly and for a nonconservative residue in NS3 in RNA replication. J Virol 77: 7804-7813.
31. Moreno AC, Ferreira LG, Martinez MB, (2009) Enteroinvasive Escherichia coli vs. Shigella flexneri: how different patterns of gene expression affect virulence. FEMS Microbiol Lett 301: 156-163.