-
1
-
-
0035136516
-
Sponge's molecular diversity through the ambivalent reactivity of 2-aminoimidazole: a universal chemical pathway to the oroidin-based pyrrole-imidazole alkaloids and their palau'amine congeners
-
Al Mourabit, A., and Potier, P. (2001) Sponge's molecular diversity through the ambivalent reactivity of 2-aminoimidazole: a universal chemical pathway to the oroidin-based pyrrole-imidazole alkaloids and their palau'amine congeners. Eur J Org Chem 2001: 237-243.
-
(2001)
Eur J Org Chem
, vol.2001
, pp. 237-243
-
-
Al Mourabit, A.1
Potier, P.2
-
2
-
-
77949568092
-
Call of the wild: antibiotic resistance genes in natural environments
-
Allen, H.K., Donato, J., Wang, H.H., Cloud-Hansen, K.A., Davies, J., and Handelsman, J. (2010) Call of the wild: antibiotic resistance genes in natural environments. Nat Rev Microbiol 8: 251-259.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 251-259
-
-
Allen, H.K.1
Donato, J.2
Wang, H.H.3
Cloud-Hansen, K.A.4
Davies, J.5
Handelsman, J.6
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
4644371358
-
Prospects for clinical introduction of nitroimidazole antibiotics for the treatment of tuberculosis
-
Barry, C.E., Boshoff, H.I.M., and Dowd, C.S. (2004) Prospects for clinical introduction of nitroimidazole antibiotics for the treatment of tuberculosis. Curr Pharm Des 10: 3239-3262.
-
(2004)
Curr Pharm Des
, vol.10
, pp. 3239-3262
-
-
Barry, C.E.1
Boshoff, H.I.M.2
Dowd, C.S.3
-
5
-
-
23144452801
-
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
-
Besemer, J., and Borodovsky, M. (2005) GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res 33: W451-W454.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Besemer, J.1
Borodovsky, M.2
-
6
-
-
0023119482
-
Nitrosubstituted aromatic compounds as nitrogen source for bacteria
-
Bruhn, C., Lenke, H., and Knackmuss, H.J. (1987) Nitrosubstituted aromatic compounds as nitrogen source for bacteria. Appl Environ Microbiol 53: 208-210.
-
(1987)
Appl Environ Microbiol
, vol.53
, pp. 208-210
-
-
Bruhn, C.1
Lenke, H.2
Knackmuss, H.J.3
-
7
-
-
0030748173
-
Metabolism of a 5-nitroimidazole in susceptible and resistant isogenic strains of Bacteroides fragilis
-
Carlier, J.P., Sellier, N., Rager, M.N., and Reysset, G. (1997) Metabolism of a 5-nitroimidazole in susceptible and resistant isogenic strains of Bacteroides fragilis. Antimicrob Agents Chemother 41: 1495-1499.
-
(1997)
Antimicrob Agents Chemother
, vol.41
, pp. 1495-1499
-
-
Carlier, J.P.1
Sellier, N.2
Rager, M.N.3
Reysset, G.4
-
8
-
-
0025368561
-
Purification and characterization of mouse liver xanthine oxidase
-
Carpani, G., Racchi, M., Ghezzi, P., Terao, M., and Garattini, E. (1990) Purification and characterization of mouse liver xanthine oxidase. Arch Biochem Biophys 279: 237-241.
-
(1990)
Arch Biochem Biophys
, vol.279
, pp. 237-241
-
-
Carpani, G.1
Racchi, M.2
Ghezzi, P.3
Terao, M.4
Garattini, E.5
-
9
-
-
0004217392
-
-
Cambridge, UK: Cambridge University Press.
-
Chaplin, M., and Bucke, C. (1990) Enzyme Technology. Cambridge, UK: Cambridge University Press.
-
(1990)
Enzyme Technology
-
-
Chaplin, M.1
Bucke, C.2
-
10
-
-
31144458334
-
Sampling the antibiotic resistome
-
D'Costa, V.M., McGrann, K.M., Hughes, D.W., and Wright, G.D. (2006) Sampling the antibiotic resistome. Science 311: 374-377.
-
(2006)
Science
, vol.311
, pp. 374-377
-
-
D'Costa, V.M.1
McGrann, K.M.2
Hughes, D.W.3
Wright, G.D.4
-
11
-
-
41749103324
-
Bacteria subsisting on antibiotics
-
Dantas, G., Sommer, M.O., Oluwasegun, R.D., and Church, G.M. (2008) Bacteria subsisting on antibiotics. Science 320: 100-103.
-
(2008)
Science
, vol.320
, pp. 100-103
-
-
Dantas, G.1
Sommer, M.O.2
Oluwasegun, R.D.3
Church, G.M.4
-
12
-
-
33845314714
-
Catabolic pathways and biotechnological applications of microbial caffeine degradation
-
Dash, S.S., and Gummadi, S.N. (2006) Catabolic pathways and biotechnological applications of microbial caffeine degradation. Biotechnol Lett 28: 1993-2002.
-
(2006)
Biotechnol Lett
, vol.28
, pp. 1993-2002
-
-
Dash, S.S.1
Gummadi, S.N.2
-
13
-
-
33947186671
-
Small molecules: the lexicon of biodiversity
-
Davies, J. (2007) Small molecules: the lexicon of biodiversity. J Biotechnol 129: 3-5.
-
(2007)
J Biotechnol
, vol.129
, pp. 3-5
-
-
Davies, J.1
-
14
-
-
68249100189
-
Darwin and microbiomes
-
Davies, J. (2009) Darwin and microbiomes. EMBO Rep 10: 805.
-
(2009)
EMBO Rep
, vol.10
, pp. 805
-
-
Davies, J.1
-
15
-
-
77954268851
-
Metagenomic analysis of apple orchard soil reveals antibiotic resistance genes encoding predicted bifunctional proteins
-
Donato, J.J., Moe, L.A., Converse, B.J., Smart, K.D., Berklein, F.C., McManus, P.S., and Handelsman, J. (2010) Metagenomic analysis of apple orchard soil reveals antibiotic resistance genes encoding predicted bifunctional proteins. Appl Environ Microbiol 76: 4396-4401.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 4396-4401
-
-
Donato, J.J.1
Moe, L.A.2
Converse, B.J.3
Smart, K.D.4
Berklein, F.C.5
McManus, P.S.6
Handelsman, J.7
-
16
-
-
21444447773
-
Structure-based phylogeny of the metallo-beta-lactamases
-
Garau, G., Di Guilmi, A.M., and Hall, B.G. (2005) Structure-based phylogeny of the metallo-beta-lactamases. Antimicrob Agents Chemother 49: 2778-2784.
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 2778-2784
-
-
Garau, G.1
Di Guilmi, A.M.2
Hall, B.G.3
-
17
-
-
16244419348
-
Treatment with benznidazole during the chronic phase of experimental Chagas' disease decreases cardiac alterations
-
Garcia, S., Ramos, C.O., Senra, J.F., Vilas-Boas, F., Rodrigues, M.M., Campos-de-Carvalho, A.C., etal. (2005) Treatment with benznidazole during the chronic phase of experimental Chagas' disease decreases cardiac alterations. Antimicrob Agents Chemother 49: 1521-1528.
-
(2005)
Antimicrob Agents Chemother
, vol.49
, pp. 1521-1528
-
-
Garcia, S.1
Ramos, C.O.2
Senra, J.F.3
Vilas-Boas, F.4
Rodrigues, M.M.5
Campos-de-Carvalho, A.C.6
-
18
-
-
62149134464
-
Sphingobacterium sp. strain PM2-P1-29 harbours a functional tet(X) gene encoding for the degradation of tetracycline
-
Ghosh, S., Sadowsky, M.J., Roberts, M.C., Gralnick, J.A., and LaPara, T.M. (2009) Sphingobacterium sp. strain PM2-P1-29 harbours a functional tet(X) gene encoding for the degradation of tetracycline. J Appl Microbiol 106: 1336-1342.
-
(2009)
J Appl Microbiol
, vol.106
, pp. 1336-1342
-
-
Ghosh, S.1
Sadowsky, M.J.2
Roberts, M.C.3
Gralnick, J.A.4
LaPara, T.M.5
-
19
-
-
2942562249
-
Evolution of the serine beta-lactamases: past, present and future
-
Hall, B.G., and Barlow, M. (2004) Evolution of the serine beta-lactamases: past, present and future. Drug Resist Updat 7: 111-123.
-
(2004)
Drug Resist Updat
, vol.7
, pp. 111-123
-
-
Hall, B.G.1
Barlow, M.2
-
20
-
-
34547939672
-
Structure-based activity prediction for an enzyme of unknown function
-
Hermann, J.C., Marti-Arbona, R., Fedorov, A.A., Fedorov, E., Almo, S.C., Shoichet, B.K., and Raushel, F.M. (2007) Structure-based activity prediction for an enzyme of unknown function. Nature 448: 775-779.
-
(2007)
Nature
, vol.448
, pp. 775-779
-
-
Hermann, J.C.1
Marti-Arbona, R.2
Fedorov, A.A.3
Fedorov, E.4
Almo, S.C.5
Shoichet, B.K.6
Raushel, F.M.7
-
21
-
-
77952926530
-
Nitroaromatic compounds, from synthesis to biodegradation
-
Ju, K.S., and Parales, R.E. (2010) Nitroaromatic compounds, from synthesis to biodegradation. Microbiol Mol Biol Rev 74: 250-272.
-
(2010)
Microbiol Mol Biol Rev
, vol.74
, pp. 250-272
-
-
Ju, K.S.1
Parales, R.E.2
-
22
-
-
62849103870
-
Taking ecological function seriously: soil microbial communities can obviate allelopathic effects of released metabolites
-
and () .
-
Kaur, H., Kaur, R., Kaur, S., Baldwin, I.T., and Inderjit (2009) Taking ecological function seriously: soil microbial communities can obviate allelopathic effects of released metabolites. PLoS ONE 4: e4700.
-
(2009)
PLoS ONE
, vol.4
-
-
Kaur, H.1
Kaur, R.2
Kaur, S.3
Baldwin, I.T.4
Inderjit5
-
23
-
-
44949242900
-
Bactericidal activity of 2-nitroimidazole against the active replicating stage of Mycobacterium bovis BCG and Mycobacterium tuberculosis with intracellular efficacy in THP-1 macrophages
-
Khan, A., Sarkar, S., and Sarkar, D. (2008) Bactericidal activity of 2-nitroimidazole against the active replicating stage of Mycobacterium bovis BCG and Mycobacterium tuberculosis with intracellular efficacy in THP-1 macrophages. Int J Antimicrob Agents 32: 40-45.
-
(2008)
Int J Antimicrob Agents
, vol.32
, pp. 40-45
-
-
Khan, A.1
Sarkar, S.2
Sarkar, D.3
-
24
-
-
2342449187
-
Arginine deiminase uses an active-site cysteine in nucleophilic catalysis of L-arginine hydrolysis
-
Lu, X., Galkin, A., Herzberg, O., and Dunaway-Mariano, D. (2004) Arginine deiminase uses an active-site cysteine in nucleophilic catalysis of L-arginine hydrolysis. J Am Chem Soc 126: 5374-5375.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 5374-5375
-
-
Lu, X.1
Galkin, A.2
Herzberg, O.3
Dunaway-Mariano, D.4
-
25
-
-
58149203237
-
CDD: specific functional annotation with the Conserved Domain Database
-
Marchler-Bauer, A., Anderson, J.B., Chitsaz, F., Derbyshire, M.K., DeWeese-Scott, C., Fong, J.H., etal. (2009) CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res 37: D205-D210.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Chitsaz, F.3
Derbyshire, M.K.4
DeWeese-Scott, C.5
Fong, J.H.6
-
26
-
-
0034284649
-
Role of NADPH: cytochrome P450 reductase in the hypoxic accumulation and metabolism of BRU59-21, a technetium-99m-nitroimidazole for imaging tumor hypoxia
-
Melo, T., Ballinger, J.R., and Rauth, A.M. (2000) Role of NADPH: cytochrome P450 reductase in the hypoxic accumulation and metabolism of BRU59-21, a technetium-99m-nitroimidazole for imaging tumor hypoxia. Biochem Pharmacol 60: 625-634.
-
(2000)
Biochem Pharmacol
, vol.60
, pp. 625-634
-
-
Melo, T.1
Ballinger, J.R.2
Rauth, A.M.3
-
27
-
-
33845351323
-
Design of hypoxia-targeting drugs as new cancer chemotherapeutics
-
Nagasawa, H., Uto, Y., Kirk, K.L., and Hori, H. (2006) Design of hypoxia-targeting drugs as new cancer chemotherapeutics. Biol Pharm Bull 29: 2335-2342.
-
(2006)
Biol Pharm Bull
, vol.29
, pp. 2335-2342
-
-
Nagasawa, H.1
Uto, Y.2
Kirk, K.L.3
Hori, H.4
-
28
-
-
28744455186
-
Evolutionary relationship and application of a superfamily of cyclic amidohydrolase enzymes
-
Nam, S.H., Park, H.S., and Kim, H.S. (2005) Evolutionary relationship and application of a superfamily of cyclic amidohydrolase enzymes. Chem Rec 5: 298-307.
-
(2005)
Chem Rec
, vol.5
, pp. 298-307
-
-
Nam, S.H.1
Park, H.S.2
Kim, H.S.3
-
29
-
-
9144265895
-
Retrieving sequences of enzymes experimentally characterized but erroneously annotated: the case of the putrescine carbamoyltransferase
-
Naumoff, D.G., Xu, Y., Glansdorff, N., and Labedan, B. (2004) Retrieving sequences of enzymes experimentally characterized but erroneously annotated: the case of the putrescine carbamoyltransferase. BMC Genomics 5: 52.
-
(2004)
BMC Genomics
, vol.5
, pp. 52
-
-
Naumoff, D.G.1
Xu, Y.2
Glansdorff, N.3
Labedan, B.4
-
30
-
-
33144476159
-
Biodegradation of 3-nitrotyrosine by Burkholderia sp. strain JS165 and Variovorax paradoxus JS171
-
Nishino, S.F., and Spain, J.C. (2006) Biodegradation of 3-nitrotyrosine by Burkholderia sp. strain JS165 and Variovorax paradoxus JS171. Appl Environ Microbiol 72: 1040-1044.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 1040-1044
-
-
Nishino, S.F.1
Spain, J.C.2
-
31
-
-
77953032413
-
Growth of bacteria on 3-nitropropionic acid as a sole source of carbon, nitrogen, and energy
-
Nishino, S.F., Shin, K.A., Payne, R.B., and Spain, J.C. (2010) Growth of bacteria on 3-nitropropionic acid as a sole source of carbon, nitrogen, and energy. Appl Environ Microbiol 76: 3590-3598.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 3590-3598
-
-
Nishino, S.F.1
Shin, K.A.2
Payne, R.B.3
Spain, J.C.4
-
32
-
-
0015025465
-
Metabolism of imidazole by a pseudomonad
-
Oien, H.G., and Wright, L.D. (1971) Metabolism of imidazole by a pseudomonad. J Bacteriol 105: 1229-1231.
-
(1971)
J Bacteriol
, vol.105
, pp. 1229-1231
-
-
Oien, H.G.1
Wright, L.D.2
-
33
-
-
0009511620
-
Studies on antibiotic actinomycetes. VII. Azomycin-producing strain resembling to Nocardia mesenterica
-
Okami, Y., Maeda, K., and Umezawa, H. (1954) Studies on antibiotic actinomycetes. VII. Azomycin-producing strain resembling to Nocardia mesenterica. J Antibiot (Tokyo) 7: 53-56.
-
(1954)
J Antibiot (Tokyo)
, vol.7
, pp. 53-56
-
-
Okami, Y.1
Maeda, K.2
Umezawa, H.3
-
34
-
-
2542525296
-
In vitro activity of Etanidazole against the protozoan parasite Trypanosoma cruzi
-
Petray, P.B., Morilla, M.J., Corral, R.S., and Romero, E.L. (2004) In vitro activity of Etanidazole against the protozoan parasite Trypanosoma cruzi. Mem Inst Oswaldo Cruz 99: 233-235.
-
(2004)
Mem Inst Oswaldo Cruz
, vol.99
, pp. 233-235
-
-
Petray, P.B.1
Morilla, M.J.2
Corral, R.S.3
Romero, E.L.4
-
35
-
-
77649204351
-
Biodegradation of 5-nitroanthranilic acid by Bradyrhizobium sp. Strain JS329
-
Qu, Y., and Spain, J.C. (2010) Biodegradation of 5-nitroanthranilic acid by Bradyrhizobium sp. Strain JS329. Appl Environ Microbiol 76: 1417-1422.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1417-1422
-
-
Qu, Y.1
Spain, J.C.2
-
36
-
-
0026583186
-
Reduced transcription of the ferredoxin gene in metronidazole-resistant Trichomonas vaginalis
-
Quon, D.V.K., Doliveira, C.E., and Johnson, P.J. (1992) Reduced transcription of the ferredoxin gene in metronidazole-resistant Trichomonas vaginalis. Proc Natl Acad Sci USA 89: 4402-4406.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 4402-4406
-
-
Quon, D.V.K.1
Doliveira, C.E.2
Johnson, P.J.3
-
37
-
-
51849125214
-
Purine fermentation by Clostridium cylindrosporum: V. Formiminoglycine
-
Rabinowitz, J.C., and Pricer, W.E. (1956) Purine fermentation by Clostridium cylindrosporum: V. Formiminoglycine. J Biol Chem 222: 537-554.
-
(1956)
J Biol Chem
, vol.222
, pp. 537-554
-
-
Rabinowitz, J.C.1
Pricer, W.E.2
-
39
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
40
-
-
5444241951
-
Taxonomic variation in the Mycobacterium fortuitum third biovariant complex: description of Mycobacterium boenickei sp. nov., Mycobacterium houstonense sp. nov., Mycobacterium neworleansense sp. nov. and Mycobacterium brisbanense sp. nov. and recognition of Mycobacterium porcinum from human clinical isolates
-
Schinsky, M.F., Morey, R.E., Steigerwalt, A.G., Douglas, M.P., Wilson, R.W., Floyd, M.M., etal. (2004) Taxonomic variation in the Mycobacterium fortuitum third biovariant complex: description of Mycobacterium boenickei sp. nov., Mycobacterium houstonense sp. nov., Mycobacterium neworleansense sp. nov. and Mycobacterium brisbanense sp. nov. and recognition of Mycobacterium porcinum from human clinical isolates. Int J Syst Evol Microbiol 54: 1653-1667.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 1653-1667
-
-
Schinsky, M.F.1
Morey, R.E.2
Steigerwalt, A.G.3
Douglas, M.P.4
Wilson, R.W.5
Floyd, M.M.6
-
41
-
-
0024425926
-
Isolation of azomycin from Pseudomonas fluorescens
-
Shoji, J.H., Hinoo, H., Terui, Y., Kikuchi, J., Hattori, T., Ishii, K., etal. (1989) Isolation of azomycin from Pseudomonas fluorescens. J Antibiot (Tokyo) 42: 1513-1514.
-
(1989)
J Antibiot (Tokyo)
, vol.42
, pp. 1513-1514
-
-
Shoji, J.H.1
Hinoo, H.2
Terui, Y.3
Kikuchi, J.4
Hattori, T.5
Ishii, K.6
-
42
-
-
57149099588
-
PA-824 kills nonreplicating Mycobacterium tuberculosis by intracellular NO release
-
Singh, R., Manjunatha, U., Boshoff, H.I.M., Ha, Y.H., Niyomrattanakit, P., Ledwidge, R., etal. (2008) PA-824 kills nonreplicating Mycobacterium tuberculosis by intracellular NO release. Science 322: 1392-1395.
-
(2008)
Science
, vol.322
, pp. 1392-1395
-
-
Singh, R.1
Manjunatha, U.2
Boshoff, H.I.M.3
Ha, Y.H.4
Niyomrattanakit, P.5
Ledwidge, R.6
-
43
-
-
69549086653
-
Functional characterization of the antibiotic resistance reservoir in the human microflora
-
Sommer, M.O., Dantas, G., and Church, G.M. (2009) Functional characterization of the antibiotic resistance reservoir in the human microflora. Science 325: 1128-1131.
-
(2009)
Science
, vol.325
, pp. 1128-1131
-
-
Sommer, M.O.1
Dantas, G.2
Church, G.M.3
-
44
-
-
85057919382
-
-
Boca Raton, FL, USA: Lewis Publishers.
-
Spain, J.C., Hughes, J.B., and Knackmuss, H.-J. (2000) Biodegradation of Nitroaromatic Compounds and Explosives. Boca Raton, FL, USA: Lewis Publishers.
-
(2000)
Biodegradation of Nitroaromatic Compounds and Explosives
-
-
Spain, J.C.1
Hughes, J.B.2
Knackmuss, H.-J.3
-
45
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
46
-
-
34247175356
-
Pathways to discovering new microbial metabolism for functional genomics and biotechnology
-
Wackett, L.P. (2007) Pathways to discovering new microbial metabolism for functional genomics and biotechnology. Adv Appl Microbiol 61: 219-232.
-
(2007)
Adv Appl Microbiol
, vol.61
, pp. 219-232
-
-
Wackett, L.P.1
-
47
-
-
0035795219
-
Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting
-
Watanabe, K., Kodama, Y., and Harayama, S. (2001) Design and evaluation of PCR primers to amplify bacterial 16S ribosomal DNA fragments used for community fingerprinting. J Microbiol Methods 44: 253-262.
-
(2001)
J Microbiol Methods
, vol.44
, pp. 253-262
-
-
Watanabe, K.1
Kodama, Y.2
Harayama, S.3
|