Genomic analysis of Acinetobacter baumannii A118 by comparison of optical maps: Identification of structures related to its susceptibility phenotype

Antimicrobial Agents and Chemotherapy

Volumn 55, Issue 4, 2011, Pages 1520-1526

  Ramirez, Maria Soledad ^a,b   Adams, Mark D ^c   Bonomo, Robert A ^c,d   Centrón, Daniela ^b   Tolmasky, Marcelo E ^a  

^a CALIFORNIA STATE UNIVERSITY   (United States)

^b UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^c CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

^d LOUIS STOKES CLEVELAND VA MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBAPENEM; CEPHALOSPORIN DERIVATIVE; IMIPENEM; MEROPENEM; PENICILLIN G;

ACINETOBACTER BAUMANNII; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC CODE; GENOMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL;

ACINETOBACTER BAUMANNII; ANTI-BACTERIAL AGENTS; DRUG RESISTANCE, BACTERIAL; GENOME, BACTERIAL;

EID: 79953224092     PISSN: 00664804     EISSN: 10986596     Source Type: Journal    
DOI: 10.1128/AAC.01595-10     Document Type: Article

References (41)

1. Adams, M. D., et al. 2008. Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii. J. Bacteriol. 190:8053-8064.
2. Barbe, V., et al. 2004. Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium. Nucleic Acids Res. 32:5766-5779.
3. Cai, W., et al. 1998. High-resolution restriction maps of bacterial artificial chromosomes constructed by optical mapping. Proc. Natl. Acad. Sci. U. S. A. 95:3390-3395.
4. Cayo, R., et al. 2010. Abstr. 8th Int. Symp. Biol. Acinetobacter, abstr. O21, p. 28.
5. Chen, Q., S. Savarino, and M. Venkatesan. 2006. Subtractive hybridization and optical mapping of the enterotoxigenic Escherichia coli H10407 chromosome: isolation of unique sequences and demonstration of significant similarity to the chromosome of E. coli K-12. Microbiology 152:1041-1056.
6. Choi, C. H., et al. 2008. Acinetobacter baumannii outer membrane protein A targets the nucleus and induces cytotoxicity. Cell. Microbiol. 10:309-319.
7. Combet, C., C. Blanchet, C. Geourjon, and G. Deleage. 2000. NPS@: network protein sequence analysis. Trends Biochem. Sci. 25:147-150.
8. Corvec, S., et al. 2003. AmpC cephalosporinase hyperproduction in Acinetobacter baumannii clinical strains. J. Antimicrob. Chemother. 52:629-635.
9. Davis, K. A., K. A. Moran, C. K. McAllister, and P. J. Gray. 2005. Multidrug-resistant Acinetobacter extremity infections in soldiers. Emerg. Infect. Dis. 11:1218-1224.
10. Dijkshoorn, L., A. Nemec, and H. Seifert. 2007. An increasing threat in hospitals: multidrug-resistant Acinetobacter baumannii. Nat. Rev. Microbiol. 5:939-951.
11. Fajardo, A., et al. 2008. The neglected intrinsic resistome of bacterial pathogens. PLoS One 3:e1619.
12. Fernandez-Cuenca, F., et al. 2003. Relationship between beta-lactamase production, outer membrane protein and penicillin-binding protein profiles on the activity of carbapenems against clinical isolates of Acinetobacter baumannii. J. Antimicrob. Chemother. 51:565-574.
13. Figueiredo, S., L. Poirel, A. Papa, V. Koulourida, and P. Nordmann. 2009. Overexpression of the naturally occurring blaOXA-51 gene in Acinetobacter baumannii mediated by novel insertion sequence ISAba9. Antimicrob. Agents Chemother. 53:4045-4047.
14. Fournier, P. E., et al. 2006. Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genet. 2:e7.
15. Gaddy, J. A., A. P. Tomaras, and L. A. Actis. 2009. The Acinetobacter baumannii 19606 OmpA protein plays a role in biofilm formation on abiotic surfaces and in the interaction of this pathogen with eukaryotic cells. Infect. Immun. 77:3150-3160.
16. Garzoni, C., et al. 2005. Atypical infections in tsunami survivors. Emerg. Infect. Dis. 11:1591-1593.
17. Gaynes, R., and J. R. Edwards. 2005. Overview of nosocomial infections caused by gram-negative bacilli. Clin. Infect. Dis. 41:848-854.
18. Guerrero, D. M., et al. 2010. Acinetobacter baumannii-associated skin and soft tissue infections: recognizing a broadening spectrum of disease. Surg. Infect. (Larchmt.) 11:49-57.
19. Gwinn, M. L., R. Ramanathan, H. O. Smith, and J. F. Tomb. 1998. A new transformation-deficient mutant of Haemophilus influenzae Rd with normal DNA uptake. J. Bacteriol. 180:746-748.
20. Hartstein, A. I., et al. 1988. Multiple intensive care unit outbreak of Acinetobacter calcoaceticus subspecies anitratus respiratory infection and colonization associated with contaminated, reusable ventilator circuits and resuscitation bags. Am. J. Med. 85:624-631.
21. Hemmerich, C., A. Buechlein, R. Podicheti, K. V. Revanna, and Q. Dong. 2010. An Ergatis-based prokaryotic genome annotation web server. Bioinformatics 26:1122-1124.
22. Heritier, C., et al. 2005. Characterization of the naturally occurring oxacillinase of Acinetobacter baumannii. Antimicrob. Agents Chemother. 49:4174-4179.
23. Hujer, K. M., et al. 2005. Identification of a new allelic variant of the Acinetobacter baumannii cephalosporinase, ADC-7 beta-lactamase: defining a unique family of class C enzymes. Antimicrob. Agents Chemother. 49:2941-2948.
24. Levy, S. B., et al. 1999. Nomenclature for new tetracycline resistance determinants. Antimicrob. Agents Chemother. 43:1523-1524.
25. Liu, A., et al. 2010. Antibiotic sensitivity profiles determined with an Escherichia coli gene knockout collection: generating an antibiotic bar code. Antimicrob. Agents Chemother. 54:1393-1403.
26. Maragakis, L. L., and T. M. Perl. 2008. Acinetobacter baumannii: epidemiology, antimicrobial resistance, and treatment options. Clin. Infect. Dis. 46:1254-1263.
27. Merkier, A. K., et al. 2008. Polyclonal spread of bla(OXA-23) and bla(OXA-58) in Acinetobacter baumannii isolates from Argentina. J. Infect. Dev. Ctries. 2:235-240.
28. Merkier, A. K., and D. Centron. 2006. bla(OXA-51)-type beta-lactamase genes are ubiquitous and vary within a strain in Acinetobacter baumannii. Int. J. Antimicrob. Agents 28:110-113.
29. Mussi, M. A., A. S. Limansky, and A. M. Viale. 2005. Acquisition of resistance to carbapenems in multidrug-resistant clinical strains of Acinetobacter baumannii: natural insertional inactivation of a gene encoding a member of a novel family of beta-barrel outer membrane proteins. Antimicrob. Agents Chemother. 49:1432-1440.
30. Perez, F., et al. 2007. Global challenge of multidrug-resistant Acinetobacter baumannii. Antimicrob. Agents Chemother. 51:3471-3484.
31. Post, V., P. A. White, and R. M. Hall. 2010. Evolution of AbaR-type genomic resistance islands in multiply antibiotic-resistant Acinetobacter baumannii. J. Antimicrob. Chemother. 65:1162-1170.
32. Predari, S., M. Gutierrez, A. De Paulis, L. Guelfand, and D. Centron Garcia. 1991. In vitro activity of 16 antibiotics and sulbactam against Acinetobacter calcoaceticus phenotype A1. J. Chemother. 48:20-25.
33. Ramirez, M. S., et al. 2010. Naturally competent Acinetobacter baumannii clinical isolate as a convenient model for genetic studies. J. Clin. Microbiol. 48:1488-1490.
34. Rodriguez-Bano, J., and R. A. Bonomo. 2008. Multidrug-resistant Acinetobacter baumannii: eyes wide shut? Enferm. Infecc. Microbiol. Clin. 26:185-186.
35. Rodriguez-Martinez, J., L. Poirel, and P. Nordmann. 2010. Genetic and functional variability of AmpC-type β-lactamases from Acinetobacter baumannii. Antimicrob. Agents Chemother. 54:4930-4933.
36. Shaikh, F., et al. 2009. ATPase genes of diverse multidrug-resistant Acinetobacter baumannii isolates frequently harbour integrated DNA. J. Antimicrob. Chemother. 63:260-264.
37. Shukla, S. K., J. Kislow, A. Briska, J. Henkhaus, and C. Dykes. 2009. Optical mapping reveals a large genetic inversion between two methicillin-resistant Staphylococcus aureus strains. J. Bacteriol. 191:5717-5723.
38. Smith, M. G., et al. 2007. New insights into Acinetobacter baumannii pathogenesis revealed by high-density pyrosequencing and transposon mutagenesis. Genes Dev. 21:601-614. (Pubitemid 46409474)
39. Talbot, G. H., et al. 2006. Bad bugs need drugs: an update on the development pipeline from the Antimicrobial Availability Task Force of the Infectious Diseases Society of America. Clin. Infect. Dis. 42:657-668.
40. Zerbino, D. R., and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829. (Pubitemid 351645072)
41. Zimbler, D. L., et al. 2009. Iron acquisition functions expressed by the human pathogen Acinetobacter baumannii. Biometals 22:23-32.