Time-resolved quantitative proteome analysis of in vivo intestinal development

Molecular and Cellular Proteomics

Volumn 10, Issue 3, 2011, Pages

  Hansson, Jenny ^a,b   Panchaud, Alexandre ^b   Favre, Laurent ^b   Bosco, Nabil ^b   Mansourian, Robert ^b   Benyacoub, Jalil ^b   Blum, Stephanie ^b   Jensen, Ole N ^a   Kussmann, Martin ^b  

^a UNIVERSITY OF SOUTHERN DENMARK   (Denmark)

^b NESTLÉ RESEARCH CENTER   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

BETA GALACTOSIDASE; CARBOHYDRATE; FATTY ACID; LACTOSE; PROTEOME; PEPTIDE;

ANIMAL CELL; ARTICLE; CARBOHYDRATE INTAKE; CARBOHYDRATE METABOLISM; CELL DIFFERENTIATION; EPITHELIUM CELL; GLYCOLYSIS; IN VIVO STUDY; INTESTINE; INTESTINE CELL; JEJUNUM; METABOLIC PARAMETERS; MOUSE; NONHUMAN; PASSIVE IMMUNIZATION; POSTNATAL DEVELOPMENT; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEOMICS; QUANTITATIVE ANALYSIS; TIME; WEANING; ANIMAL; C57BL MOUSE; ENZYMOLOGY; GROWTH, DEVELOPMENT AND AGING; INTESTINE ABSORPTION; ISOTOPE LABELING; LIPID METABOLISM; METABOLISM; METHODOLOGY; PROTEIN DATABASE;

MUS;

ANIMALS; CARBOHYDRATE METABOLISM; DATABASES, PROTEIN; EPITHELIAL CELLS; FATTY ACIDS; GLYCOLYSIS; INTESTINAL ABSORPTION; INTESTINES; ISOTOPE LABELING; LIPID METABOLISM; MICE; MICE, INBRED C57BL; PEPTIDES; PROTEOME; PROTEOMICS; TIME FACTORS;

EID: 79953205617     PISSN: 15359476     EISSN: 15359484     Source Type: Journal    
DOI: 10.1074/mcp.M110.005231     Document Type: Article

References (45)

1. Danielsen, M., Hornshøj, H., Siggers, R. H., Jensen, B. B., van Kessel, A. G., and Bendixen, E. (2007) Effects of bacterial colonization on the porcine intestinal proteome. J. Proteome. Res. 6, 2596-2604
2. Greco, S., Hugueny, I., George, P., Perrin, P., Louisot, P., and Biol, M. C. (2000) Influence of spermine on intestinal maturation of the glycoprotein glycosylation process in neonatal rats. Biochem. J. 345 Pt 1, 69-75
3. Hooper, L. V. (2004) Bacterial contributions to mammalian gut development. Trends Microbiol. 12, 129-134
4. Rådberg, K., Biernat, M., Linderoth, A., Zabielski, R., Pierzynowski, S. G., and Weström, B. R. (2001) Enteral exposure to crude red kidney bean lectin induces maturation of the gut in suckling pigs. J. Anim Sci. 79, 2669-2678
5. Strzalkowski, A. K., Godlewski, M. M., Hallay, N., Kulasek, G., Gajewski, Z., and Zabielski, R. (2007)The effect of supplementing sow with bioactive substances on neonatal small intestinal epithelium. J. Physiol Pharmacol. 58 Suppl 3,115-122 (Pubitemid 47523108)
6. de Santa Barbara, P., van den Brink, G. R., and Roberts, D. J. (2003) Development and differentiation of the intestinal epithelium. Cell Mol. Life Sci. 60, 1322-1332
7. Cummins, A. G., Jones, B. J., and Thompson, F. M. (2006) Postnatal epithelial growth of the small intestine in the rat occurs by both crypt fission and crypt hyperplasia. Dig. Dis. Sci. 51, 718-723
8. Buddington, R. K. (1994) Nutrition and ontogenetic development of the intestine. Can. J. Physiol Pharmacol. 72, 251-259
9. Henning, S. J. (1981) Postnatal development: coordination of feeding, digestion, and metabolism. Am. J. Physiol. 241, G199-G214
10. Moxey, P. C., and Trier, J. S. (1979) Development of villus absorptive cells in the human fetal small intestine: a morphological and morphometric study. Anat. Rec. 195, 463-482
11. Kraehenbuhl, J. P., Bron, C., and Sordat, B. (1979) Transfer of humoral secretory and cellular immunity from mother to offspring. Curr. Top. Pathol. 66, 105-157
12. Fanaro, S., Chierici, R., Guerrini, P., and Vigi, V. (2003) Intestinal microflora in early infancy: composition and development. Acta Paediatr. Suppl 91, 48-55 (Pubitemid 37239252)
13. Mackie, R. I., Sghir, A., and Gaskins, H. R. (1999) Developmental microbial ecology of the neonatal gastrointestinal tract. Am. J. Clin. Nutr. 69, S1035-S1045
14. Neish, A. S. (2009) Microbes in gastrointestinal health and disease. Gastroenterology 136, 65-80
15. Sekirov, I., Russell, S. L., Antunes, L. C., and Finlay, B. B. (2010) Gut microbiota in health and disease. Physiol. Rev. 90, 859-904
16. Fang, R., Olds, L. C., and Sibley, E. (2006) Spatio-temporal patterns of intestine-specific transcription factor expression during postnatal mouse gut development. Gene Expr. Patterns. 6, 426-432
17. Gordon, J. I., Elshourbagy, N., Lowe, J. B., Liao, W. S., Alpers, D. H., and Taylor, J. M. (1985) Tissue specific expression and developmental regulation of two genes coding for rat fatty acid binding proteins. J. Biol. Chem. 260, 1995-1998
18. Jenkins, S. L., Wang, J., Vazir, M., Vela, J., Sahagun, O., Gabbay, P., Hoang, L., Diaz, R. L., Aranda, R., and Martín, M. G. (2003) Role of passive and adaptive immunity in influencing enterocyte-specific gene expression. Am. J. Physiol. Gastrointest. Liver Physiol 285, G714-G725
19. Lu, S., Huffman, M., Yao, Y., Mansbach, C. M., 2nd, Cheng, X., Meng, S., and Black, D. D. (2002) Regulation of MTP expression in developing swine. J. Lipid Res. 43, 1303-1311
20. Mochizuki, K., Mochizuki, H., Kawai, H., Ogura, Y., Shimada, M., Takase, S., and Goda, T. (2007) Possible role of fatty acids in milk as the regulator of the expression of cytosolic binding proteins for fatty acids and vitamin A through PPARalpha in developing rats. J. Nutr. Sci. Vitaminol. 53, 515-521
21. Mochizuki, K., Yorita, S., and Goda, T. (2009) Gene expression changes in the jejunum of rats during the transient suckling-weaning period. J. Nutr. Sci. Vitaminol. 55, 139-148
22. deSchoolmeester, M. L., Manku, H., and Else, K. J. (2006) The innate immune responses of colonic epithelial cells to Trichuris muris are similar in mouse strains that develop a type 1 or type 2 adaptive immune response. Infect. Immun. 74, 6280-6286
23. Zhou, P., Streutker, C., Borojevic, R., Wang, Y., and Croitoru, K. (2004) IL-10 modulates intestinal damage and epithelial cell apoptosis in T cell-mediated enteropathy. Am. J. Physiol. Gastrointest. Liver Physiol 287, G599-G604
24. Al-Shahrour, F., Minguez, P., Tárraga, J., Montaner, D., Alloza, E., Vaquerizas, J. M., Conde, L., Blaschke, C., Vera, J., and Dopazo, J. (2006) BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. Nucleic Acids Res. 34, W472-W476 (Pubitemid 44529816)
25. Thomas, P. D., Campbell, M. J., Kejariwal, A., Mi, H., Karlak, B., Daverman, R., Diemer, K., Muruganujan, A., and Narechania, A. (2003) PANTHER: a library of protein families and subfamilies indexed by function. Genome Res. 13, 2129-2141 (Pubitemid 37161770)
26. Dennis, G., Jr., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C., and Lempicki, R. A. (2003) DAVID: Database for annotation, visualization, and integrated discovery. Genome Biol. 4, 3
27. Huang da, W., Sherman, B. T., and Lempicki, R. A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4, 44-57
28. Chang, J., Chance, M. R., Nicholas, C., Ahmed, N., Guilmeau, S., Flandez, M., Wang, D., Byun, D. S., Nasser, S., Albanese, J. M., Corner, G. A., Heerdt, B. G., Wilson, A. J., Augenlicht, L. H., and Mariadason, J. M. (2008) Proteomic changes during intestinal cell maturation in vivo. J. Proteomics. 71, 530-546
29. Weber, G. (1983) Biochemical strategy of cancer cells and the design of chemotherapy: G. H. A. Clowes Memorial Lecture. Cancer Res. 43, 3466-3492
30. Rautava, S., and Walker, W. A. (2007) Commensal bacteria and epithelial cross talk in the developing intestine. Curr. Gastroenterol. Rep. 9, 385-392
31. Kent, J. C. (2007) How breastfeeding works. J. Midwifery Womens Health 52, 564-570
32. Gygi, S. P., Rochon, Y., Franza, B. R., and Aebersold, R. (1999) Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19, 1720-1730
33. Nie, L., Wu, G., Culley, D. E., Scholten, J. C., and Zhang, W. (2007) Integrative analysis of transcriptomic and proteomic data: challenges, solutions and applications. Crit Rev. Biotechnol. 27, 63-75
34. Tso, P., Nauli, A., and Lo, C. M. (2004) Enterocyte fatty acid uptake and intestinal fatty acid-binding protein. Biochem. Soc. Trans. 32, 75-78
35. Stahl, A., Hirsch, D. J., Gimeno, R. E., Punreddy, S., Ge, P., Watson, N., Patel, S., Kotler, M., Raimondi, A., Tartaglia, L. A., and Lodish, H. F. (1999) Identification of the major intestinal fatty acid transport protein. Mol. Cell 4, 299-308
36. Cao, J., Hawkins, E., Brozinick, J., Liu, X., Zhang, H., Burn, P., and Shi, Y. (2004) A predominant role of acyl-CoA:monoacylglycerol acyltransferase-2 in dietary fat absorption implicated by tissue distribution, subcellular localization, and up-regulation by high fat diet. J. Biol. Chem. 279, 18878-18886
37. Coleman, R. A., and Haynes, E. B. (1984) Hepatic monoacylglycerol acyltransferase. Characterization of an activity associated with the suckling period in rats. J. Biol. Chem. 259, 8934-8938
38. Danielsen, M., Thymann, T., Jensen, B. B., Jensen, O. N., Sangild, P. T., and Bendixen, E. (2006) Proteome profiles of mucosal immunoglobulin uptake in inflamed porcine gut. Proteomics. 6, 6588-6596 (Pubitemid 46048397)
39. Rodewald, R. (1980) Distribution of immunoglobulin G receptors in the small intestine of the young rat. J. Cell Biol. 85, 18-32
40. Gill, R. K., Mahmood, S., Sodhi, C. P., Nagpaul, J. P., and Mahmood, A. (1999) IgG binding and expression of its receptor in rat intestine during postnatal development. Indian J. Biochem. Biophys. 36, 252-257
41. Abrahamson, D. R., and Rodewald, R. (1981) Evidence for the sorting of endocytic vesicle contents during the receptor-mediated transport of IgG across the newborn rat intestine. J. Cell Biol. 91, 270-280 (Pubitemid 12252788)
42. Allen, K., Gokay, K. E., Thomas, M. A., Speelman, B. A., and Wilson, J. M. (1998) Biosynthesis of endotubin: an apical early endosomal glycoprotein from developing rat intestinal epithelial cells. Biochem. J. 330 (Pt 1), 367-373
43. McCarter, S. D., Johnson, D. L., Kitt, K. N., Donohue, C., Adams, A., and Wilson, J. M. (2010) Regulation of tight junction assembly and epithelial polarity by a resident protein of apical endosomes. Traffic. 11, 856-866
44. Lee, H. M., Greeley, G. H., Jr., and Englander, E. W. (2001) Age-associated changes in gene expression patterns in the duodenum and colon of rats. Mech. Ageing Dev. 122, 355-371
45. Skrzypek, T., Valverde Piedra, J. L., Skrzypek, H., Kazimierczak, W., Biernat, M., and Zabielski, R. (2007)Gradual disappearance of vacuolated enterocytes in the small intestine of neonatal piglets. J. Physiol Pharmacol. 58 Suppl 3, 87-95