Plio-Pleistocene sea level and temperature fluctuations in the northwestern Pacific promoted speciation in the globally-distributed flathead mullet Mugil cephalus

BMC Evolutionary Biology

Volumn 11, Issue 1, 2011, Pages

  Shen, Kang Ning ^a   Jamandre, Brian Wade ^a   Hsu, Chih Chieh ^a   Tzeng, Wann Nian ^a   Durand, Jean Dominique ^b  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (Senegal)

Author keywords

[No Author keywords available]

Indexed keywords

CRYPSIS; DISPERSAL; DIVERGENCE; ESTUARINE ENVIRONMENT; FISH; GENE FLOW; GENETIC ANALYSIS; GENETIC DIFFERENTIATION; GENETIC MARKER; GLACIATION; HETEROGENEITY; MARINE ENVIRONMENT; MITOCHONDRIAL DNA; PHYLOGEOGRAPHY; PLEISTOCENE; PLIOCENE; POPULATION DISTRIBUTION; REGRESSION ANALYSIS; SEA LEVEL CHANGE; SPECIATION (BIOLOGY); TEMPERATURE PROFILE; ALLOPATRY; PLIOCENE-PLEISTOCENE BOUNDARY; REGRESSION; TELEOST; TEMPERATURE GRADIENT;

KUROSHIO CURRENT; PACIFIC OCEAN; PACIFIC NORTHWEST;

MUGIL CEPHALUS;

FISH PROTEIN; MICROSATELLITE DNA; MITOCHONDRIAL DNA; SEA WATER;

ANIMAL; ARTICLE; CHEMISTRY; CLASSIFICATION; ECOSYSTEM; GENE FLOW; GENETIC VARIABILITY; GENETICS; MARINE BIOLOGY; MOLECULAR GENETICS; PHYLOGENY; SEA; SMEGMAMORPHA; SPECIES DIFFERENTIATION; TEMPERATURE; UNITED STATES;

ANIMALS; DNA, MITOCHONDRIAL; ECOSYSTEM; FISH PROTEINS; GENE FLOW; GENETIC SPECIATION; GENETIC VARIATION; MARINE BIOLOGY; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; NORTHWESTERN UNITED STATES; OCEANS AND SEAS; PHYLOGENY; SEAWATER; SMEGMAMORPHA; TEMPERATURE;

EID: 79953197969     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-83     Document Type: Article

References (78)

1. Contrasting signals from multiple markers illuminate population connectivity in a marine species. M Sala-Bozano V Ketmaier S Mariani, Mol Ecol 2009 18 4811 4826 10.1111/j.1365-294X.2009.04404.x 19863720
2. Genetic structure among 50 species of the Northeastern Pacific intertidal community. RP Kelly SR Palumbi, PLoS One 2010 5 8594 10.1371/journal.pone. 0008594 20062807
3. The 'Expansion-Contraction' model of pleistocene biogeography: rocky shores suffer a sea change? PB Marko JM Hoffman SA Emme TM McGovern CC Keever LN Cox, Mol Ecol 2010 19 146 169 10.1111/j.1365-294X.2009.04417.x 20092033
4. Genetic signature of recent glaciation on populations of a near-shore marine fish species (Syngnathus leptorhyncus). AB Wilson, Mol Ecol 2006 15 1857 1871 10.1111/j.1365-294X.2006.02911.x 16689903 (Pubitemid 43725671)
5. Little shrimp left on the shelf: the roles that sea-level change, ocean currents and continental shelf width play in the genetic connectivity of a seagrass-associated species. JA Haig RM Connolly JM Hughes, J Biogeog 2010 37 1570 1583
6. Strong genetic differentiation and postglacial origin of populations in the marine midge Clunio marinus (Chironomidae, Diptera). TS Kaiser D Neumann DG Heckel TU Berendonk, Mol Ecol 2010 19 2845 2857 10.1111/j.1365-294X.2010.04706.x 20584134
7. Evaluating signatures of glacial refugia for North Atlantic benthic marine taxa. CA Maggs R Castilho D Foltz C Henzler MT Jolly J Kelly J Olsen KE Perez W Stam R Väinölä F Viard J Wares, Ecology 2008 89 Suppl 11 108 S122 10.1890/08-0257.1 19097488
8. Response of Western Pacific marginal seas to glacial cycles: paleoceanographic and sedimentological features. P Wang, Mar Geol 1999 156 5 39 10.1016/S0025-3227(98)00172-8 (Pubitemid 29130885)
9. History of the inflow of the warm Tsushima Current into the Sea of Japan between 3.5 and 0.8 Ma. A Kitamura K Kimoto, Paleogeogr Palaeocl Palaeoecol 2006 236 355 366 10.1016/j.palaeo.2005.11.015 (Pubitemid 43818029)
10. Marine speciation, tectonics and sea-level changes in southeast Asia. JW McManus, Proceedings of the Fifth International Coral Reef Congress: 27 May-1 June 1985; Tahiti 4 133 138
11. Genetic structure of marine organisms and SE Asian biogeography. JAH Benzie, Biogeography and Geological Evolution Leiden, The Netherlands: Backhuys Publishers, Hall R, Holloway JD, 1998 197 209
12. Biogeography and conservation in Southeast Asia: how 2.7 million years of repeated environmental fluctuations affect today's pattern and the future of the remaining refugal-phase biodiversity. DS Woodruff, Biodiversity Conserv 2010 19 919 941 10.1007/s10531-010-9783-3
13. Genetic diversity in the mtDNA control region and population structure in the Sardinella zunasi Bleeker. M Wang X Zhang T Yang Z Han T Yanagimoto T Gao, Afr J Biotechnol 2008 7 4384 4392
14. Phylogeography of the flathead mullet Mugil cephalus in the north-west Pacific as inferred from the mtDNA control region. BW Jamandre JD Durand WN Tzeng, J Fish Biol 2009 75 393 407 10.1111/j.1095-8649.2009.02332.x 20738545
15. Cryptic species and historical biogeography of eel gobies (Gobioidei: Odontamblyopus) along the northwestern Pacific coast. W Tang A Ishimatsu C Fu W Yin G Li H Chen Q Wu B Li, Zool Sci 2010 27 8 13 10.2108/zsj.27.8 20064002
16. Pleistocene isolation in the northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845). JX Liu TX Gao SF Wu YP Zhang, Mol Ecol 2007 16 275 288 10.1111/j.1365-294X.2006.03140.x 17217344
17. Genetic diversity and differentiation of grey mullet (Mugil cephalus) in the coastal waters of Taiwan. HM Ke WW Lin HW Kao, Zool Sci 2009 26 421 428 10.2108/zsj.26.421 19583502
18. A bibliography of systematic references to the flathead mullets (Mugilidae). JM Thomson, Tech Pap Div Fish Oceanogr, CSIRO 1964 16 1 127
19. Investigation and surveillance of grey mullet resource. CS Huang JC Lin JJ Huang, FRI Newsletter 2005 9 1 5
20. The impact of upstream catch and global warming on the grey mullet fishery in Taiwan: a non-cooperative game analysis. CM Hung D Shaw, Mar Res Econ 2006 21 285 300
21. Population genetic structure and historical demography of grey mullet, Mugil cephalus, along the coast of China, inferred by analysis of the mitochondrial control region. JY Liu CL Brown TB Yang, Biochem Syst Ecol 2009 37 556 566 10.1016/j.bse.2009.09.002
22. Distingishing two types of gray mullet, Mugil cephalus L. (Mugiliformes: Mugilidae), by using glucose-6-phosphate isomerase (GPI) allozymes with special reference to enzyme activities. CS Huang CF Weng SC Lee, J Comp Physiol B 2001 171 387 394 10.1007/s003600100187 11497126 (Pubitemid 32620702)
23. Population genetic structure of striped mullet, Mugil cephalus, along the coast of China, inferred by AFLP fingerprinting. JY Liu ZR Lun JB Zhang TB Yang, Biochem Syst Ecol 2009 37 266 274 10.1016/j.bse.2009.04.010
24. Allozyme variation and population structure of striped mullet (Mugil cephalus) in Florida. DE Campton B Mahmoudi, Copeia 1991 91 485 492 10.2307/1446596
25. High genetic diversity, large inter-oceanic divergence and historical demography of the striped mullet. A Rocha-Olivares NM Garber KC Stuck, J Fish Biol 2000 57 1134 1149 10.1111/j.1095-8649.2000.tb00476.x
26. DNA barcoding Australia's fish species. RD Ward TS Zemlak BH Innes PR Last PDN Hebert, Phil Trans Roy Soc Lond B Biol Sci 2005 360 1847 1857 10.1098/rstb.2005.1716 (Pubitemid 44365045)
27. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. K Katoh K Misazawa KI Kuma M Takashi, Nucleic Acids Res 2002 30 3059 3066 10.1093/nar/gkf436 12136088 (Pubitemid 34851225)
28. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. L Excoffier G Laval S Schneider, Evol Bioinform Online 2005 1 47 50 19325852
29. MRBAYES: Bayesian inference of phylogeny. JP Huelsenbeck F Ronquist, Bioinformatics 2001 17 754 755 10.1093/bioinformatics/17.8.754 11524383
30. PAUP*: phylogenetic analysis using parsimony (* and other methods). version 4.0.b10. DL Swofford, Sunderland, MA: Sinauer Associates 2002
31. Molecular phylogeny of Mugilidae fishes revised. S Heras MI Roldn MG Castro, Rev Fish Biol Fish 2009 19 217 231 10.1007/s11160-008-9100-3
32. MODELTEST: testing the model of DNA substitution. D Posada KA Crandall, Bioinformatics 1998 14 817 818 10.1093/bioinformatics/14.9.817 9918953 (Pubitemid 28552116)
33. An empirical test of bootstrapping as a method for assessing confidence in Phylogenetic analysis. DM Hillis JJ Bull, Syst Biol 1993 42 182 192
34. "BEAST: Bayesian evolutionary analysis by sampling trees". AJ Drummond A Rambaut, BMC Evol Biol 2007 7 214 10.1186/1471-2148-7-214 17996036
35. The great American schism: divergence of marine organisms after the rise of the central American isthmus. HA Lessios, Annu Rev Ecol Evol Syst 2008 36 63 91 10.1146/annurev.ecolsys.38.091206.095815
36. Tracer v1.4. A Rambaut AJ Drummond, 2007 http://beast.bio.ed.ac.uk/Tracer
37. Statistical methods to test for nucleotide mutation hypothesis by DNA polymorphism. F Tajima, Genetics 1989 123 585 595 2513255 (Pubitemid 19274682)
38. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. YX Fu, Genetics 1997 147 915 925 9335623
39. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. RC Harpending, Hum Biol 1994 66 591 600 8088750
40. Molecular identification of dolphinfish species (genus Coryphaena) using multiplex haplotype-specific PCR of mitochondrial DNA. A Rocha-Olivares JP Chavez-Gonzalez, Ichthyol Res 2008 55 389 393 10.1007/s10228-008-0040-7
41. Multiplex 16 S rRNA haplotype-specific PCR, a rapid and convenient method for fish species identification: an application to West African Clupeiform larvae. JD Durand AM Diatta K Diop S Trape, Mol Ecol Res 2010 10 568 572 10.1111/j.1755-0998.2009.02776.x
42. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2010-31 May 2010. Molecular Ecology Resources Primer Development Consortium et al, Mol Ecol Res 2010 10 1098 1105 10.1111/j.1755-0998.2010.02898. x
43. The genetical structure of populations. S Wright, Ann Eugenics 1951 15 323 354
44. K Belkhir P Borsa L Chikhi N Raufaste F Bonhomme, GENETIX: logiciel sous Windows TM pour la génétique des populations Laboratoire Genome Populations, Interactions CNRS, Université de Montpellier II 4.02 1996
45. Analyzing tables of statistical tests. WR Rice, Evolution 1989 43 223 225 10.2307/2409177
46. J Goudet, FSTAT, a program to estimate and test gene diversities and fixation indices Version 2.9.3 Lausanne University, Lausanne, Switzerland 2001
47. Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. GL Luikart JM Cornuet, Conserv Biol 1998 12 228 237 10.1046/j.1523-1739.1998.96388.x (Pubitemid 28153821)
48. GENEPOP (version 1.2): population genetics software for exact test and ecumenism. M Raymond F Rousset, J Hered 1995 86 248 250
49. Inference of population structure using multilocus genotype data. JK Pritchard M Stephens P Donnelly, Genetics 2000 155 945 959 10835412 (Pubitemid 30397141)
50. Detecting the number of clusters of individuals using the software structure: a simulation study. G Evanno S Regnaut J Goudet, Mol Ecol 2005 14 2611 2620 10.1111/j.1365-294X.2005.02553.x 15969739 (Pubitemid 40886055)
51. Late Pliocene early Pleistocene paleoceanographic evolution of the Japan Sea. A Kitamura O Takano H Takata H Omote, Paleogeogr Palaeocl Palaeoecol 2001 172 81 98 10.1016/S0031-0182(01)00272-3 (Pubitemid 32774007)
52. Submarine geology and post-opening tectonic movements in the southern region of the Japan Sea. H Yamamoto, Mar Geol 1993 112 133 150 10.1016/0025-3227(93)90165-R (Pubitemid 24429365)
53. Paleoceanographic evolution of the Japan Sea. R Tada, Paleogeogr Palaeocl Palaeoecol 1994 108 487 508 10.1016/0031-0182(94)90248-8 (Pubitemid 24427647)
54. Phylogeography of the mitten crab Eriocheir sensu stricto in East Asia: Pleistocene isolation, population expansion and secondary contact. JW Xu TY Chan LM Tsang KH Chu, Mol Phylogenet Evol 2009 52 45 56 10.1016/j.ympev.2009.02.007 19236929
55. Geographic variability in the grey mullet Mugil cephalus: preliminary results of mtDNA and chromosome analyses. D Crosetti JC Avise F Placidi AR Rossi L Sola, Aquaculture 1993 111 95 101 10.1016/0044-8486(93)90028-W
56. Pronounced genetic structure of mitochondrial DNA among populations of the circumglobally distributed grey mullet (Mugil cephalus Linaeus). D Crosetti WS Nelson JC Avise, J Fish Biol 1994 44 47 58 10.1111/j.1095-8649.1994.tb01584.x (Pubitemid 2025958)
57. Allozyme variation in global populations of striped mullet, Mugil cephalus (Pisces: Mugilidae). AR Rossi M Capula D Crosetti L Sola DE Campton, Mar Biol 1998 131 203 212 10.1007/s002270050312 (Pubitemid 28278536)
58. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. PDN Hebert EH Penton JM Burns DH Janzen W Hallwachs, Proc Natl Acad Sci USA 2004 101 14812 14817 10.1073/pnas.0406166101 15465915 (Pubitemid 39410757)
59. On the fishery biology of gray mullet, Mugil cephalus L., in Taiwan. IH Tung, Rep Inst Fish Biol Ministry Econ Affairs Natl Taiwan Univ 1981 3 38 102
60. Reproductive biology of the flathead mullets, Mugil cephalus L. of Taiwan. WY Chen WC Su, Study on the resource of flathead mullet in Taiwan, 1983-1985 Kaohsiung: Kaohsiung Branch TFRI, Su WC, 1986 73 80
61. Studies on the fluctuations of fishing conditions for flathead mullet (Mugil cephalus Linnaeus) from the western coast of Taiwan. CS Huang WC Su, J Fish Soc Taiwan 1989 16 47 83
62. Kinds, local names and seasonal appearance of the fingerlings of grey mullet, Mugil cephalus L., in coastal waters of west Taiwan. CY Lee CL Kuo, China Fish Monthly 1990 448 13 18
63. Recruitment and hatching dates of gray mullet (Mugil cephalus L.) juveniles in the Tanshui estuary of northwest Taiwan. CW Chang WN Tzeng YC Lee, Zool Stud 2000 39 99 106
64. Species composition and seasonal occurrence of mullets (Pisces, Mugilidae) in the Tanshui estuary northwest Taiwan. CW Chang WN Tzeng, J Fish Soc Taiwan 2000 27 253 262
65. Population structure of copper rockfish (Sebastes caurinus) reflects postglacial colonization and contemporary patterns of larval dispersal. VP Buonaccorsi CA Kimbrell EA Lynn RD Vetter, Can J Fish Aquat Sci 2002 59 1374 1384 10.1139/f02-101 (Pubitemid 35374396)
66. The influence of oceanographic fronts and early-life-history traits on connectivity among littoral fish species. JA Galarza J Carreras-Carbonell E Macpherson M Pascual S Roques GF Turner C Rico, Proc Natl Acad Sci USA 2009 106 1473 1478 10.1073/pnas.0806804106 19164518
67. Geographical patterns of genetic structure in marine species with contrasting life history. RA Pelc RR Warner SD Gaines, J Biogeogr 2009 36 1881 1890 10.1111/j.1365-2699.2009.02138.x
68. A review on the currents in the South China Sea: seasonal circulation, South China Sea Warm Current and Kuroshio intrusion. J Hu H Kawamura H Hong Y Qi, J Oceanogr 2000 56 607 624 10.1023/A:1011117531252 (Pubitemid 32152420)
69. Recharge flux to ocean-ridge black smoker systems: a geochemical estimate from ODP Hole 504B. DAH Teagle MJ Bickle JC Alt, Earth Planet Sci Let 2003 210 81 89 10.1016/S0012-821X(03)00126-2 (Pubitemid 36650073)
70. Connectivity of the Taiwan, Cheju, and Korea straits. WJ Teague GA Jacobs DS Ko TY Tang KI Chang MS Suk, Cont Shelf Res 2003 23 63 77 10.1016/S0278-4343(02)00150-4 (Pubitemid 36093280)
71. Phylogenetic relationships of mullets (Mugilidae) in China Seas based on partial sequences of two mitochondrial genes. JY Liu CL Brown TB Yang, Biochem Syst Ecol 2010 38 647 655 10.1016/j.bse.2010.01.007
72. Differential population structuring and demographic history of two closely related fish species, Japanese sea bass (Lateolabrax japonicus) and spotted sea bass (Lateolabrax maculatus) in Northwestern Pacific. JX Liu TX Gao K Yokogawa YP Zhang, Mol Phylogenet Evol 2006 39 799 811 10.1016/j.ympev.2006. 01.009 16503171 (Pubitemid 44262099)
73. Population genetic structure of the kuruma prawn (Penaeus japonicus) in East Asia inferred from mitochondrial DNA sequences. TD Tzeng SY Yeh CF Hui, ICES J Mar Sci 2004 61 913 920 10.1016/j.icesjms.2004.06.015 (Pubitemid 39301126)
74. Studies on genetic diversity and differentiation between two allopatric populations of Cyclina sinensis. BP Pan LS Song WJ Bu JS Sun, Acta Hydrobiol Sin 2005 29 372 387
75. Genetic diversity and divergence among clam Cyclina sinensis populations assessed using amplified fragment length polymorphism. YM Zhao Q Li LF Kong ZM Bao RC Wang, Fish Sci 2007 73 1338 1343 (Pubitemid 350211393)
76. Genetic Differentiation of Tegillarca granosa Based on Mitochondrial COI Gene Sequences. WJ Zheng SH Zhu XQ Shen BQ Liu ZC Pan YF Ye, Zool Res 2009 30 17 23 10.3724/SP.J.1141.2009.01017
77. RAPD analysis on intra-species differentiation of Tegillarca granosa populations to the south and north of Fujian province. CH Li TW Li LS Song XR Su, Zool Res 2003 24 362 366
78. Species delimitation and historical biogeography in the genus Helice (Brachyura: Varunidae) in the Northwestern Pacific. W Yin C Fu L Guo Q He J Li B Jin Q Wu B Li, Zool Sci 2009 26 467 475 10.2108/zsj.26.467 19663641