A Point Mutation in the Pentatricopeptide repeat Motif of the AtECB2 Protein Causes Delayed Chloroplast Development

Journal of Integrative Plant Biology

Volumn 53, Issue 4, 2011, Pages 258-269

  Cao, Zhi Lin ^a,b   Yu, Qing Bo ^a   Sun, Yue ^a   Lu, Yang ^a   Cui, Yong Lan ^a   Yang, Zhong Nan ^a  

^a SHANGHAI NORMAL UNIVERSITY   (China)

^b HENAN INSTITUTE OF ENGINEERING   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; CHLOROPHYLL; ECB2 PROTEIN, ARABIDOPSIS; MESSENGER RNA;

CHLOROPLAST; LEAF; LIFE CYCLE; PHENOTYPE; PROTEIN; SEEDLING; TRANSMISSION ELECTRON MICROSCOPY;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; CHEMISTRY; CHLOROPLAST; FLUORESCENCE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLANT LEAF; POINT MUTATION; PROTEIN MOTIF; RNA EDITING; SEQUENCE ALIGNMENT; ULTRASTRUCTURE;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BASE SEQUENCE; CHLOROPHYLL; CHLOROPLASTS; FLUORESCENCE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENETIC COMPLEMENTATION TEST; MOLECULAR SEQUENCE DATA; PHENOTYPE; PLANT LEAVES; POINT MUTATION; REPETITIVE SEQUENCES, AMINO ACID; RNA EDITING; RNA, MESSENGER; SEQUENCE ALIGNMENT;

ARABIDOPSIS;

EID: 79953043401     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2011.01030.x     Document Type: Article

References (51)

1. Abdallah F, Salamini F, Leister D (2000) A prediction of the size and evolutionary origin of the proteome of chloroplasts of Arabidopsis. Trends Plant Sci. 5, 141-142.
2. Beick S, Schmitz-Linneweber C, Williams-Carrier R, Jensen B, Barkan A (2008) The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts. Mol. Cell Biol. 28, 5337-5347.
3. Bentolila S, Elliott LE, Hanson MR (2008) Genetic architecture of mitochondrial editing in Arabidopsis thaliana. Genetics 178, 1693-1708.
4. Cai W, Ji D, Peng L, Guo J, Ma J, Zou M, Lu C, Zhang L (2009) LPA66 is required for editing psbF chloroplast transcripts in Arabidopsis. Plant Physiol. 150, 1260-1271.
5. Chateigner-Boutin AL, Ramos-Vega M, Guevara-García A, Andrés C, de la Luz Gutiérrez-Nava M, Cantero A, Delannoy E, Jiménez LF, Lurin C, Small I, Len P (2008) CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts. Plant J. 56, 590-602.
6. Chateigner-Boutin AL, Small I (2007) A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons. Nucleic Acids Res. 35, e114.
7. Chateigner-Boutin AL, Small I (2010) Plant RNA editing. J. RNA Biology 7, 213-219.
8. Chaudhuri S, Maliga P (1996) Sequences directing C-to-U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site. EMBO J. 15, 5958-5964.
9. Chi W, Ma JF, Zhang DY, Guo JK, Chen F, Lu CM, Zhang LX (2008) The PPR protein DG1 is involved in the regulation of early chloroplast development and chloroplast gene expression in Arabidopsis thaliana. Plant Physiol. 108, 573-584.
10. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
11. Delannoy E, Stanley WA, Bond CS, Small I (2007) Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in posttranscriptional processes in organelles. Biochem. Soc. Trans. 35, 1643-1647.
12. Fisk DG, Walker MB, Barkan A (1999) Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression. EMBO J. 18, 2621-2630.
13. Hammani K, Okuda K, Tanz SK, Chateigner-Boutin AL, Shikanai T, Small I (2009) A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites. Plant Cell 21, 3686-3699.
14. Hashimoto M, Endo T, Peltier G, Tasaka M, Shikanai T (2003) A nucleus-encoded factor, CRR2, is essential for the expression of chloroplast ndhB in Arabidopsis. Plant J. 6, 541-549.
15. Hattori M, Miyake H, Sugita M (2007) A pentatricopeptide repeat protein is required for RNA processing of clpP Pre-mRNA in moss chloroplasts. J. Biol. Chem. 282, 10773-10782.
16. Hayes ML, Hanson MR (2007) Identification of a sequence motif critical for editing of a tobacco chloroplast transcript. RNA 13, 281-288.
17. Hirose T, Sugiura M (2001) Involvement of a site-specific transacting factor and a common RNA-binding protein in the editing of chloroplast mRNAs: Development of a chloroplast in vitro RNA editing system. EMBO J. 20, 1144-1152.
18. Kode V, Mudd EA, Iamtham S, Day A (2005) The tobacco plastid accD gene is essential and is required for leaf development. Plant J. 44, 237-244.
19. Kotera E, Tasaka M, Shikanai T (2005) A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Nature 433, 326-330.
20. Leon P, Arroyo A, Mackenzie S (1998) Nuclear control of plastid and mitochondrial development in higher plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49, 453-480.
21. Lichtenthaler HK, Wellburn AR (1983) Determination of total carotenoids and chlorophylls a and b of leaf extracts in different solvents. Biochem. Soc. Trans. 11, 591-592.
22. Liu X, Yu F, Rodermel S (2010) Arabidopsis chloroplast FtsH, var2 and suppressors of var2 leaf variegation: A review. J. Integr. Plant Biol. 52, 750-761.
23. de Longevialle AF, Hendrickson L, Taylor NL, Delannoy E, Lurin C, Badger M, Millar AH, Small I (2008) The pentatricopeptide repeat gene OTP51 with two LAGLIDADG motifs is required for the cis-splicing of plastid ycf3 intron 2 in Arabidopsis thaliana. Plant J. 56, 157-168.
24. de Longevialle AF, Meyer EH, Andrés C, Taylor NL, Lurin C, Millar AH, Small I (2007) The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana. Plant Cell 19, 3256-3265.
25. Lurin C, Andrés C, Aubourg S, Bellaoui M, Bitton F, Bruyère C, Caboche M, Debast C, Gualberto J, Hoffmann B, Lecharny A, Le Ret M, Martin-Magniette ML, Mireau H, Peeters N, Renou JP, Szurek B, Taconnat L, Small I (2004) Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell 16, 2089-2103.
26. Meierhoff K, Felder S, Nakamura T, Bechtold N, Schuster G (2003) HCF152, an Arabidopsis RNA binding pentatricopeptide repeat protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD RNAs. Plant Cell 15, 1480-1495.
27. Meurer J, Meierhoff K, Westhoff P (1996) Isolation of high-chlorophyll-fluorescence mutants of Arabidopsis thaliana and their characterization by spectroscopy, immunoblotting and Northern hybridization. Planta 198, 385-396.
28. Motohashi R, Nagata N, Ito T, Takahashi S, Hobo T, Yoshida S, Shinozaki K (2001) An essential role of a TatC homologue of a Delta pH-dependent protein transporter in thylakoid membrane formation during chloroplast development in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 98, 10499-10504.
29. Mullet JE (1988) Chloroplast development and gene expression. Annu. Rev. Plant Physiol. Plant Mol. Biol. 39, 475-502.
30. Nakamura T, Meierhoff K, Westhoff P, Schuster G (2003) RNA-binding properties of HCF152, an Arabidopsis PPR protein involved in the processing of chloroplast RNA. Eur. J. Biochem. 270, 4070-4081.
31. Okuda K, Chateigner-Boutin AL, Nakamura T, Delannoy E, Sugita M, Myouga F, Motohashi R, Shinozaki K, Small I, Shikanai T (2009) Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts. Plant Cell 21, 146-156.
32. Okuda K, Habata Y, Kobayashi Y, Shikanai T (2008) Amino acid sequence variations in Nicotiana CRR4 orthologs determine the species-specific efficiency of RNA editing in plastids. Nucleic Acids Res. 36, 6155-6164.
33. Okuda K, Hammani K, Tanz SK, Peng LW, Fukao Y, Myouga F, Motohashi R, Shinozaki K, Small I and Shikanai T (2010) The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts. Plant J. 61, 339-349.
34. Okuda K, Myouga F, Motohashi R, Shinozaki K, Shikanai T (2007) Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing. Proc. Natl. Acad. Sci. USA 104, 8178-8183.
35. Okuda K, Nakamura T, Sugita M, Shimizu T, Shikanai T (2006) A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing. J. Biol. Chem. 281, 37661-37667.
36. Pfalz J, Bayraktar OA, Prikryl J, Barkan A (2009) Site-specific binding of a PPR protein defines and stabilizes 5' and 3' mRNA termini in chloroplasts. EMBO J. 28, 2042-2052.
37. Reed ML, Peeters NM, Hanson MR (2001) A single alteration 20 nt 5' to an editing target inhibits chloroplast RNA editing in vivo. Nucleic Acids Res. 29, 1507-1513.
38. Robbins JC, Heller WP, Hanson MR (2009) A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript. RNA 15, 1142-1153.
39. Sakamoto W, Miyagishima S, Jarvis P (2010) Chloroplast biogenesis: Control of plastid development, protein import, division and inheritance. In Somerville CR, Meyerowitz EM, Dangl J, Stitt M, eds. The Arabidopsis Book. American Society of Plant Biologists, Rockville, MD, doi:
40. Sasaki Y, Nagano Y (2004) Plant acetyl-CoA carboxylase: structure, biosynthesis, regulation, and gene manipulation for plant breeding. Biosci. Biotechnol. Biochem. 68, 1175-1184.
41. Schmitz-Linneweber C, Williams-Carrier R, Barkan A (2005) RNA immunoprecipitation and microarray analysis show a chloroplast pentatricopeptide repeat protein to be associated with the 5' region of mRNAs whose translation it activates. Plant Cell 17, 2791-2804.
42. Schmitz-Linneweber C, Williams-Carrier RE, Williams-Voelker PM, Kroeger TS, Vichas A, Barkan A (2006) A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA. Plant Cell 18, 2650-2663.
43. Shikanai T (2006) RNA editing in plant organelles: Machinery, physiological function, and evolution. Cell. Mol. Life Sci. 63, 698-708.
44. Small I, Peeters N (2000) The PPR motif-a TPR-related motif prevalent in plant organellar proteins. Trends Biochem. Sci. 25, 46-47.
45. Takenaka M (2010) MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis. Plant Physiol. 152, 939-947.
46. Tseng CC, Sung TY, Li YC, Hsu SJ, Lin CL, Hsieh MH (2010) Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant. Plant Mol. Biol. 73, 309-323.
47. Williams PM, Barkan A (2003) A chloroplast-localized PPR protein required for plastid ribosome accumulation. Plant J. 36, 675-686.
48. Yamazaki H, Tasaka M, Shikanai T (2004) PPR motifs of the nucleus-encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis. Plant J. 38, 152-163.
49. Yu QB, Jiang Y, Chong K, Yang ZN (2009) AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana. Plant J. 59, 1011-1023.
50. Zhang ZB, Zhu J, Gao JF, Wang C, Li H, Li H, Zhang HQ, Zhang S, Wang DM, Wang QX, Huang H, Xia HJ, Yang ZN (2007) Transcription factor AtMYB103 is required for anther development by regulating tapetum development, callose dissolution and exine formation in Arabidopsis. Plant J. 52, 528-538.
51. Zhou W, Cheng Y, Yap A, Chateigner-Boutin AL, Delannoy E, Hammani K, Small I, Huang J (2009) The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth. Plant J. 58, 82-96.