DNA nanostructures as models for evaluating the role of enthalpy and entropy in polyvalent binding

Journal of the American Chemical Society

Volumn 133, Issue 12, 2011, Pages 4490-4497

  Nangreave, Jeanette ^a   Yan, Hao ^a   Liu, Yan ^a  

^a ARIZONA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASSOCIATION EQUILIBRIA; BINDING BEHAVIORS; CONFORMATIONAL FLEXIBILITY; DESIGN AND CONSTRUCTION; DNA NANOSTRUCTURES; DNA NANOTECHNOLOGY; GAIN INSIGHT; NANO-SCALE OBJECTS; QUANTITATIVE IDENTIFICATION; SYNTHETIC DNA;

BEHAVIORAL RESEARCH; DNA; ENTHALPY; ENTROPY; NANOSTRUCTURES; SCAFFOLDS;

NUCLEIC ACIDS;

DIMER; DNA; NANOMATERIAL;

ARTICLE; DNA BINDING; DNA CONFORMATION; DNA STRUCTURE; ENTHALPY; ENTROPY; FLUORESCENCE RESONANCE ENERGY TRANSFER; HOLLIDAY JUNCTION; TEMPERATURE; THERMOSTABILITY;

BINDING SITES; DNA; MODELS, MOLECULAR; NANOSTRUCTURES; NANOTECHNOLOGY; POLYMERS; THERMODYNAMICS;

EID: 79953041320     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja1103298     Document Type: Article

References (27)

1. Mammen, M.; Choi, S. K.; Whitesides, G. M. Angew. Chem. Int. Ed. 1998, 37, 2754-2794
2. Nangreave, J.; Yan, H.; Liu, Y. Biophys. J. 2009, 97, 563-571
3. Seeman, N. C. J. Theor. Biol. 1982, 99, 237-247
4. Seeman, N. C.; Kallenbach, N. R. Biophys. J. 1983, 44, 201-209
5. Kallenbach, N. R.; Ma, R. I.; Seeman, N. C. Nature 1983, 305, 829-831
6. Marky, L. A.; Kallenbach, N. R.; McDonough, K. A.; Seeman, N. C.; Breslauer, K. J. Biopolymers 1987, 26, 1621-1634
7. Cooper, J. P.; Hagerman, P. J. J. Mol. Biol. 1987, 198, 711-719
8. Churchill, M. E. A.; Tullius, T. D.; Kallenbach, N. R.; Seeman, N. C. Proc. Natl. Acad. Sci. U.S.A. 1988, 85, 4653-4656
9. Duckett, D. R.; Murchie, A. I. H.; Diekmann, S.; von Kitzing, E.; Kemper, B.; Lilley, D. M. J. Cell 1988, 55, 79-89
10. Cooper, J. P.; Hagerman, P. J. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 7336-7340
11. Murchie, A. I. H.; Clegg, R. M.; von Kitzing, E.; Duckett, D. R.; Diekmann, S.; Lilley, D. M. J. Nature 1989, 341, 763-766
12. Lu, M.; Guo, Q.; Marky, L. A.; Seeman, N. C.; Kallenbach, N. R. J. Mol. Biol. 1992, 223, 781-789
13. Mao, C.; Sun, W.; Seeman, N. C. J. Am. Chem. Soc. 1999, 121, 5437-5443
14. Fu, T. J.; Seeman, N. C. Biochemistry 1993, 32, 3211-3220
15. Winfree, E.; Liu, F.; Wenzler, L. A.; Seeman, N. C. Nature 1998, 394, 539-544
16. Miick, S. M.; Fee, R. S.; Millar, D. P.; Chazin, W. J. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 9080-9084
17. McKinney, S. A.; Declais, A.-C.; Lilley, D. M. J.; Ha, T. Nat. Struct. Biol. 2002, 10, 93-97
18. Altona, C. J. Mol. Biol. 1996, 263, 568-581
19. Petrillo, M. L.; Newton, C. J.; Cunningham, R. P. Biopolymers 1988, 27, 1337-1352
20. Li, X.; Yang, X.; Qi, J.; Seeman, N. C. J. Am. Chem. Soc. 1996, 118, 6131-6140
21. Sa-Ardyen, P.; Vologodskii, A. V.; Seeman, N. C. Biophys. J. 2003, 84, 3829-3837
22. von Kitzing, E.; Lilley, D. M. J.; Diekmann, S. Nucleic Acids Res. 1990, 18, 2671-2683
23. Eis, P. S.; Millar, D. P. Biochemistry 1993, 32, 13852-13860
24. Sacca, B.; Meyer, R.; Feldkamp, U.; Schroeder, H.; Niemeyer, C. M. Angew. Chem. Int. Ed. 2008, 47, 2135-2137
25. Sacca, B.; Meyer, R.; Niemeyer, C. M. Nat. Protoc. 2009, 4, 271-285
26. Du, S. M.; Zhang, S.; Seeman, N. C. Biochemistry 1991, 31, 10955-10963
27. Wang, H.; Seeman, N. C. Biochemistry 1995, 34, 920-929