Whole brain diffeomorphic metric mapping via integration of sulcal and gyral curves, cortical surfaces, and images

NeuroImage

Volumn 56, Issue 1, 2011, Pages 162-173

  Du, Jia ^a   Younes, Laurent ^b   Qiu, Anqi ^a,c  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b JOHNS HOPKINS UNIVERSITY   (United States)

^c AGENCY FOR SCIENCE   (Singapore)

Author keywords

Cortical surface; Diffeomorphic metric mapping; Image segmentation; Sulcal and gyral curves

Indexed keywords

ADULT; AGED; ALGORITHM; ARTICLE; BRAIN CORTEX; BRAIN MAPPING; BRAIN SIZE; DIFFEOMORPHIC METRIC MAPPING; FEMALE; HUMAN; IMAGE PROCESSING; IMAGE RECONSTRUCTION; KERNEL METHOD; MALE; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; STATISTICAL ANALYSIS;

ALGORITHMS; BRAIN; BRAIN MAPPING; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; MAGNETIC RESONANCE IMAGING; PATTERN RECOGNITION, AUTOMATED;

EID: 79953034250     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2011.01.067     Document Type: Article

References (47)

1. Anticevic A., Dierker D.L., Gillespie S.K., Repovs G., Csernansky J.G., Essen D.C.V., Barch D.M. Comparing surface-based and volume-based analyses of functional neuroimaging data in patients with schizophrenia. Neuroimage 2008, 41(3):835-848.
2. Arrate F. Evolution equations on the group of diffeomorphisms with applications in computational anatomy. Ph.D. thesis 2010, Johns Hopkins University.
3. Ashburner J. A fast diffeomorphic image registration algorithm. Neuroimage 2007, 38:95-113.
4. Beg M.F., Miller M.I., Trouvé A., Younes L. Computing large deformation metric mappings via geodesic flows of diffeomorphisms. Int. J. Comput. Vision 2005, 61(2):139-157.
5. Cachier P., Mangin J.-F., Pennec X., Pennec X., Riviere D., Papadopoulos-Orfanos D., Ayache N., Regis J., Ayache N. Multisubject non-rigid registration of brain MRI using intensity and geometric features. MICCAI 2001, 2208:734-742.
6. Christensen G.E., Joshi S.C., Miller M.I. Volumetric transformation of brain anatomy. IEEE Trans. Med. Imaging December 1997, 16(6):864-877.
7. Clouchoux C., Coulon O., Riviere D., Cachia A., Mangin J.-F., Regis J. Anatomically constrained surface parameterization for cortical localization. MICCAI 2005, 3750:344-351.
8. Collins D., Evans A. Animal: validation and applications of non-linear registration-based segmentation. Int. J. Pattern Recognit. Artificial Intell. 1997, 11:1271-1294.
9. Collins D.L., Goualher G.L., Evans A.C. Non-linear cerebral registration with sulcal constraints. MICCAI 1998, 974-984.
10. Dale A.M., Fischl B., Sereno M.I. Cortical surface-based analysis-I. Segmentation and surface reconstruction. Neuroimage February 1999, 9(2):179-194.
11. Davatzikos C. Spatial transformation and registration of brain images using elastically deformable models. Comp. Vis. Image Underst. May 1997, 66(2):207-222.
12. Dubuisson, M. P., Jain, A. K., 1994. A modified hausdorff distance for object matching. Proceedings of the 12th IAPR International Conference on Computer Vision and Image Processing 1, 566-568.
13. Dupuis P., Grenander U., Miller M.I. Variational problems on flows of diffeo-morphisms for image matching. Quarterly Appl. Math. 1998, 56:587-600.
14. Durrleman S. Statistical models of currents for measuring the variability of anatomical curves, surfaces and their evolution. Ph.D. thesis 2010, University of Nice-Sophia Antipolis.
15. Essen D.C.V. A population-average, landmark- and surface-based (PALS-B12) atlas of human cerebral cortex. Neuroimage 2005, 28:635-662.
16. Fischl B., Salat D.H., ven der Kouwe A.J.W., Segonne F., Dale A.M. Sequence-independent segmentation of magnetic resonance images. Neuroimage 2004, 23:S69-S84.
17. Fischl B., Sereno M.I., Dale A.M. Cortical surface-based analysis II: inflation, flattening, and a surface-based coordinate system. Neuroimage 1999, 9:195-207.
18. Fischl B., Sereno M.I., Tootell R.B.H., Dale A.M. High-resolution inter-subject averaging and a surface-based coordinate system. Hum. Brain Mapp. 1999, 8:272-284.
19. Glaunès J., Qiu A., Miller M.I., Younes L. Large deformation diffeomorphic metric curve mapping. Int. J. Comput. Vision 2008, 80:317-336.
20. Glaunès J., Trouve A., Younes L. Diffeomorphic matching of distributions: a new approach for unlabelled point-sets and sub-manifolds matching. CVPR IEEE Comput. Soc. 2004, 712-718.
21. Hellier P., Barillot C. Coupling dense and landmark-based approaches for non rigid registration. IEEE Trans. Med. Imaging 2000, 22:217-227.
22. Jenkinson M., Smith S. A global optimisation method for robust affine registration of brain images. Med. Image Anal. 2001, 5:143-156.
23. Johnson H., Christensen G. Consistent landmark and intensity-based image registration. Med. Imaging IEEE Trans. 2002, 21:450-461.
24. Joshi, A., Leahy, R., Toga, A. W., Shattuck, D., 2009. A framework for brain registration via simultaneous surface and volume flow. IPMI '09: Proceedings of the 21st International Conference on Information Processing in Med Imaging, 576-588.
25. Joshi A., Shattuck D., Thompson P., Leahy R. Surface-constrained volumetric brain registration using harmonic mappings. IEEE Trans. Med. Imaging 2007, 26:1657-1669.
26. Lyttelton O., Boucher M., Robbins S., Evans A. An unbiased iterative group registration template for cortical surface analysis. Neuroimage 2007, 34:1535-1544.
27. Mangin J.-F., Riviere D., Cachia A., Duchesnay E., Cointepas Y., Papadopoulus- Orfanos D., Ochiai T., Regis J. A framework for studying cortical folding patterns. Neuroimage 2004, 23:S129-S138.
28. Marcus D.S., Wang T.H., Parker J., Csernansky J.G., Morris J.C., Buckner R.L. Open access series of imaging studies (OASIS): cross-sectional MRI data in young, middle aged, nondemented, and demented older adults. J. Cogn. Neurosci. 2007, 19:1498-1507.
29. Miller M.I., Qiu A. The emerging discipline of computational functional anatomy. Neuroimage 2009, 45:S16-S39.
30. Miller M.I., Trouve A., Younes L. On metrics and Euler-Lagrange equations of computational anatomy. Ann. Rev. Biomed. Engng. 2002, 4:375-405.
31. Pantazisa D., Joshi A., Leahya R.M. Comparison of landmark-based and automatic methods for cortical surface registration. Neuroimage 2010, 49:2479-2493.
32. Postelnicu G., Zollei L., Fischl B. Combined volumetric and surface registration. IEEE Trans. Med. Imaging 2009, 28:508-522.
33. Qiu A., Miller M.I. Cortical hemisphere registration via large deformation diffeomorphic metric curve mapping. MICCAI 2007, 10:186-193.
34. Ratnanather J.T., Barta P.E., Honeycutt N.A., Lee N., Morris H.M., Dziorny A.C., Hurdal M.K., Pearlson G.D., Miller M.I. Dynamic programming generation of boundaries of local coordinatized submanifolds in the neocortex: application to the planum temporale. Neuroimage 2003, 20:359-377.
35. Shen D., Davatzikos C. Hammer: hierarchical attribute matching mechanism for elastic registration. IEEE Trans. Med. Imaging 2002, 21(11):1421-1439.
36. Sled J., Zijdenbos A., Evans A. A nonparametric method for automatic correction of intensity nonuniformity in MRI data. IEEE Trans. Med. Imaging 1998, 17(1):87-97.
37. Thompson P.M., Schwartz C., Lin R.T., Khan A.A., Toga A.W. Three-dimensional statistical analysis of sulcal variability in the human brain. J. Neurosci. 1996, 16(13):4261-4274.
38. Toro R., Burnod Y. Geometric atlas: modeling the cortex as an organized surface. Neuroimage 2003, 20(3):1468-1484.
39. Vaillant M., Glaunès J. Surface matching via currents. Lecture Notes in Computer Science. Inform. Proc. Med. Imaging 2005, 3565:381-392.
40. Vaillant M., Miller M.I., Younes L., Trouve A. Statistics on diffeomorphisms via tangent space representations. Neuroimage 2004, 23:161-169.
41. Vaillant M., Qiu A., Glaunès J., Miller M.I. Diffeomorphic metric surface mapping in subregion of the superior temporal gyrus. Neuroimage 2007, 34:1149-1159.
42. van Essen D. Surface-based approaches to spatial localization and registration in primate cerebral cortex. Neuroimage 2004, 23:s97-s107.
43. van Essen D. A population-average, landmark- and surface-based (PALS) atlas of human cerebral cortex. Neuroimage 2005, 28:635-662.
44. van Essen D.C., Drury H.A., Joshi S., Miller M.I. Functional and structural mapping of human cerebral cortex: solutions are in the surfaces. Proc. Natl Acad. Sci. 1998, 95:788-795.
45. Vercauteren T., Pennec X., Perchant A., Ayache N. Diffeomorphic demons: efficient non-parametric image registration. Neuroimage 2009, 45:S61-S72.
46. Zhong J., Phua D.Y.L., Qiu A. Quantitative evaluation of lddmm, freesurfer, and caret for cortical surface mapping. Neuroimage 2010, 52(1):131-141.
47. Zhong J., Qiu A. Multi-manifold diffeomorphic metric mapping for aligning cortical hemispheric surfaces. Neuroimage 2010, 49:355-365.