-
1
-
-
0029884694
-
GOR method for predicting protein secondary structure from amino acid sequence
-
J. Garnier, J. F. Gibrat, and B. Robson, "GOR Method for Predicting Protein Secondary Structure from Amino Acid Sequence", Methods in Enzymology, vol. 266, pp. 541-553, 1996.
-
(1996)
Methods in Enzymology
, vol.266
, pp. 541-553
-
-
Garnier, J.1
Gibrat, J.F.2
Robson, B.3
-
2
-
-
0028965118
-
Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments
-
A. A. Salamov and V. V. Solovyev, "Prediction of Protein Secondary Structure by Combining Nearest-Neighbor Algorithms and Multiple Sequence Alignments", J. Molecular Biology, vol. 247, pp. 11-15, 1995.
-
(1995)
J. Molecular Biology
, vol.247
, pp. 11-15
-
-
Salamov, A.A.1
Solovyev, V.V.2
-
3
-
-
0034047548
-
Bayesian segmentation of protein secondary structure
-
DOI 10.1089/10665270050081496
-
S. C. Schmidler, J. S. Liu, and D. L. Brutlag, "Bayesian Segmentation of Protein Secondary Structure", J. Computational Biology, vol. 7, pp. 233-248, 2000. (Pubitemid 30412172)
-
(2000)
Journal of Computational Biology
, vol.7
, Issue.1-2
, pp. 233-248
-
-
Schmidler, S.C.1
Liu, J.S.2
Brutlag, D.L.3
-
4
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
DOI 10.1006/jmbi.1993.1413
-
B. Rost and C. Sander, "Prediction of Protein Secondary Structure at Better than 70 Percent Accuracy", J. Molecular Biology, vol. 232, pp. 584-599, 1993. (Pubitemid 23251181)
-
(1993)
Journal of Molecular Biology
, vol.232
, Issue.2
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
5
-
-
0029984070
-
Improving prediction of protein secondary structure using structured neural networks and multiple sequence alignments
-
S. K. Riis and A. Krogh, "Improving Prediction of Protein Secondary Structure Using Structured Neural Networks and Multiple Sequence Alignment", J. Computational Biology, vol. 3, pp. 163-183, 1996. (Pubitemid 26182766)
-
(1996)
Journal of Computational Biology
, vol.3
, Issue.1
, pp. 163-183
-
-
Krogh, A.1
-
6
-
-
0033369033
-
Exploiting the past and the future in protein secondary structure prediction
-
P. Baldi, S. Brunak, P. Frasconi, G. Soda, and G. Pollastri, "Exploiting the Past and the Future in Protein Secondary Structure Prediction", Bioinformatics, vol. 5, pp. 937-946, 1999. (Pubitemid 30103164)
-
(1999)
Bioinformatics
, vol.15
, Issue.11
, pp. 937-946
-
-
Baldi, P.1
Brunak, S.2
Frasconi, P.3
Soda, G.4
Pollastri, G.5
-
7
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
DOI 10.1006/jmbi.1999.3091
-
D. T. Jones, "Protein Secondary Structure Prediction Based on Position-Specific Scoring Matrices", J. Molecular Biology, vol. 292, pp. 195-202, 1999. (Pubitemid 29435759)
-
(1999)
Journal of Molecular Biology
, vol.292
, Issue.2
, pp. 195-202
-
-
Jones, D.T.1
-
8
-
-
0033106244
-
Evaluation and improvement of multiple sequence methods for protein secondary structure prediction
-
DOI 10.1002/(SICI)1097-0134(19990301)34:4<508::AID-PROT10>3.0.CO;2- 4
-
J. A. Cuff and G. J. Barton, "Evaluation and Improvement of Multiple Sequence Methods for Protein Secondary Structure Prediction", Proteins, vol. 4, pp. 508-519, 1999. (Pubitemid 29129701)
-
(1999)
Proteins: Structure, Function and Genetics
, vol.34
, Issue.4
, pp. 508-519
-
-
Cuff, J.A.1
Barton, G.J.2
-
9
-
-
0033933636
-
Cascaded multiple classifiers for secondary structure prediction
-
M. Ouali and R. D. King, "Cascaded Multiple Classifiers for Secondary Structure Prediction", Protein Science, vol. 9, pp. 1162-1176, 1999.
-
(1999)
Protein Science
, vol.9
, pp. 1162-1176
-
-
Ouali, M.1
King, R.D.2
-
10
-
-
33751108305
-
A consensus data mining secondary structure prediction by combining GOR V and Fragment Database Mining
-
DOI 10.1110/ps.062125306
-
T. Z. Sen, H. Cheng, A. Kloczkowski, and R. L. Jernigan, "A Consensus Data Mining Secondary Structure Prediction by Combining GOR V and Fragment Database Mining", Protein Science, vol. 15, no. 11, pp. 2499-2506, 2006. (Pubitemid 44771687)
-
(2006)
Protein Science
, vol.15
, Issue.11
, pp. 2499-2506
-
-
Sen, T.Z.1
Cheng, H.2
Kloczkowski, A.3
Jernigan, R.L.4
-
11
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
S. F. Altschul, T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman, "Gapped BLAST and PSI-BLAST: A New Generation of Protein Database Search Programs", Nucleic Acids Research, vol. 25, no. 17, pp. 3389-3402, 1997. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
12
-
-
0142027795
-
Coupled prediction of protein secondary and tertiary structure
-
DOI 10.1073/pnas.1831973100
-
J. Meiler and D. Baker, "Coupled Prediction of Protein Secondary and Tertiary Structure", Protein Science, vol. 100, no. 21, pp. 12105-12110, 2003. (Pubitemid 37271522)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.21
, pp. 12105-12110
-
-
Meiler, J.1
Baker, D.2
-
13
-
-
0141593924
-
Protein secondary structure prediction based on an improved support vector machines approach
-
H. Kim and H. Park, "Protein Secondary Structure Prediction Based on an Improved Support Vector Machines Approach", Protein Eng. vol. 16, pp. 553-560, 2003. (Pubitemid 37139706)
-
(2003)
Protein Engineering
, vol.16
, Issue.8
, pp. 553-560
-
-
Kim, H.1
Park, H.2
-
14
-
-
38049047106
-
Prediction of protein secondary structure with two-stage multi-class SVM approach
-
M. N. Nguyen and J. C. Rajapakse, "Prediction of Protein Secondary Structure with Two-Stage Multi-Class SVM Approach", Int'l J. Data Mining and Bioinformatics, vol. 1, no. 3, pp. 248-269, 2007.
-
(2007)
Int'l J. Data Mining and Bioinformatics
, vol.1
, Issue.3
, pp. 248-269
-
-
Nguyen, M.N.1
Rajapakse, J.C.2
-
15
-
-
14644440766
-
Prediction of protein relative solvent accessibility with a two-stage SVM approach
-
DOI 10.1002/prot.20404
-
M. N. Nguyen and J. C. Rajapakse, "Prediction of Protein Relative Solvent Accessibility with a Two-Stage SVM Approach", Proteins: Structure, Function, and Bioinformatics, vol. 59, pp. 30-37, 2005. (Pubitemid 40316475)
-
(2005)
Proteins: Structure, Function and Genetics
, vol.59
, Issue.1
, pp. 30-37
-
-
Nguyen, M.N.1
Rajapakse, J.C.2
-
16
-
-
33646036734
-
Two-stage support vector regression approach for predicting accessible surface areas of amino acids
-
M. N. Nguyen and J. C. Rajapakse, "Two-Stage Support Vector Regression Approach for Predicting Accessible Surface Areas of Amino Acids", Proteins: Structure, Function, and Bioinformatics, vol. 63, pp. 542-550, 2006.
-
(2006)
Proteins: Structure, Function, and Bioinformatics
, vol.63
, pp. 542-550
-
-
Nguyen, M.N.1
Rajapakse, J.C.2
-
17
-
-
33644982752
-
Rule generation for protein secondary structure prediction with support vector machines and decision tree
-
Mar.
-
J. He, H. Hu, R. Harrison, P. C. Tai, and Y. Pan, "Rule Generation for Protein Secondary Structure Prediction with Support Vector Machines and Decision Tree", IEEE Trans. Nanobioscience, vol. 5, no. 1, pp. 46-53, Mar. 2006.
-
(2006)
IEEE Trans. Nanobioscience
, vol.5
, Issue.1
, pp. 46-53
-
-
He, J.1
Hu, H.2
Harrison, R.3
Tai, P.C.4
Pan, Y.5
-
18
-
-
0036568032
-
On the learnability and design of output codes for multiclass problems
-
DOI 10.1023/A:1013637720281, Computational Learning Theory
-
K. Crammer and Y. Singer, "On the Learnability and Design of Output Codes for Multiclass Problems", Machine Learning, vol. 47, pp. 201-233, 2002. (Pubitemid 34126110)
-
(2002)
Machine Learning
, vol.47
, Issue.2-3
, pp. 201-233
-
-
Crammer, K.1
Singer, Y.2
-
21
-
-
0036505670
-
A comparison on methods for multi-class support vector machines
-
C. W. Hsu and C. J. Lin, "A Comparison on Methods for Multi-Class Support Vector Machines", IEEE Trans. Neural Networks, vol. 13, pp. 415-425, 2002.
-
(2002)
IEEE Trans. Neural. Networks
, vol.13
, pp. 415-425
-
-
Hsu, C.W.1
Lin, C.J.2
-
22
-
-
59649111124
-
Gene classification using codon usage and support vector machines
-
Jan.-Mar
-
J. M. Ma, M. N. Nguyen, and J. C. Rajapakse, "Gene Classification Using Codon Usage and Support Vector Machines", IEEE/ACM Trans. Computational Biology and Bioinformatics, vol. 6, no. 1, pp. 134-143, Jan.-Mar. 2009.
-
(2009)
IEEE/ACM Trans. Computational Biology and Bioinformatics
, vol.6
, Issue.1
, pp. 134-143
-
-
Ma, J.M.1
Nguyen, M.N.2
Rajapakse, J.C.3
-
24
-
-
0028569692
-
Tests for helix-stabilizing interactions between various nonpolar side chains in alanine-based peptides
-
S. Padmanabhan, and R. L. Baldwin, "Tests for Helix-Stabilizing Interactions between Various Nonpolar Side Chains in Alanine-Based Peptides", Protein Science, vol. 3, pp. 1992-1997, 1994.
-
(1994)
Protein Science
, vol.3
, pp. 1992-1997
-
-
Padmanabhan, S.1
Baldwin, R.L.2
-
25
-
-
0026018050
-
α-Helix stabilization by natural and unnatural amino acids with alkyl side chains
-
P. C. Lyu, J. C. Sherman, A. Chen, and N. R. Kallenbach, "α-Helix Stabilization by Natural and Unnatural Amino Acids with Alkyl Side Chains", Proc. Nat'l Academy of Sciences USA, vol. 88, pp. 5317-5320, 1991. (Pubitemid 21914735)
-
(1991)
Proceedings of the National Academy of Sciences of the United States of America
, vol.88
, Issue.12
, pp. 5317-5320
-
-
Lyu, P.C.1
Sherman, J.C.2
Chen, A.3
Kallenbach, N.R.4
-
26
-
-
0024290472
-
Amino acid preferences for specific locations at the ends of α helices
-
J. S. Richardson and D. C. Richardson, "Amino Acid Preferences for Specific Locations at the Ends of α Helices", Science, vol. 240, no. 4859, pp. 1648-1652, 1988.
-
(1988)
Science
, vol.240
, Issue.4859
, pp. 1648-1652
-
-
Richardson, J.S.1
Richardson, D.C.2
-
27
-
-
0025767350
-
β-Breakers: An aperiodic secondary structure
-
N. Colloc'h and F. E. Cohen, "β-Breakers: An Aperiodic Secondary Structure", J. Molecular Biology, vol. 221, no. 2, pp. 603-613, 1991.
-
(1991)
J. Molecular Biology
, vol.221
, Issue.2
, pp. 603-613
-
-
Colloc'h, N.1
Cohen, F.E.2
-
28
-
-
0035866015
-
Sequence codes for extended conformation: A neighbor-dependent sequence analysis of loops in proteins
-
DOI 10.1002/1097-0134(20010215)42:3<399::AID-PROT100>3.0.CO;2-E
-
C. J. Crasto and J. A. Feng, "Sequence Codes for Extended Conformation: A Neighbor-Dependent Sequence Analysis of Loops in Proteins", Proteins: Structure, Function, and Genetics, vol. 42, no. 3, pp. 399-413, 2001. (Pubitemid 32107764)
-
(2001)
Proteins: Structure, Function and Genetics
, vol.42
, Issue.3
, pp. 399-413
-
-
Crasto, C.J.1
Feng, J.-A.2
-
29
-
-
34447096122
-
Sequence analysis and rule development of predicting protein stability change upon mutation using decision tree model
-
DOI 10.1007/s00894-007-0197-4
-
L. T. Huang, M. M. Gromiha, and S. Y. Ho, "Sequence Analysis and Rule Development of Predicting Protein Stability Change Upon Mutation Using Decision Tree Model", J. Molecular Modeling, vol. 13, no. 8, pp. 879-890, 2007. (Pubitemid 47028811)
-
(2007)
Journal of Molecular Modeling
, vol.13
, Issue.8
, pp. 879-890
-
-
Huang, L.-T.1
Gromiha, M.M.2
Ho, S.-Y.3
-
30
-
-
33751311798
-
Knowledge acquisition and development of accurate rules for predicting protein stability changes
-
DOI 10.1016/j.compbiolchem.2006.06.004, PII S1476927106000491
-
L. T. Huang, M. M. Gromiha, S. F. Hwang, and S. Y. Ho, "Knowledge Acquisition and Development of Accurate Rules for Predicting Protein Stability Changes", Computational Biology and Chemistry, vol. 30, no. 6, pp. 408-415, 2006. (Pubitemid 44803125)
-
(2006)
Computational Biology and Chemistry
, vol.30
, Issue.6
, pp. 408-415
-
-
Huang, L.-T.1
Gromiha, M.M.2
Hwang, S.-F.3
Ho, S.-Y.4
-
31
-
-
38049092147
-
Rule extraction from SVM for protein structure prediction
-
J. He, H. J. Hu, B. Chen, P. C. Tai, R. Harrison, and Y. Pan, "Rule Extraction from SVM for Protein Structure Prediction", Studies in Computational Intelligence, vol. 80, pp. 227-252, 2008.
-
(2008)
Studies in Computational Intelligence
, vol.80
, pp. 227-252
-
-
He, J.1
Hu, H.J.2
Chen, B.3
Tai, P.C.4
Harrison, R.5
Pan, Y.6
-
32
-
-
33845350971
-
Amphipathic helices as mediators of the membrane interaction of amphitropic proteins, and as modulators of bilayer physical properties
-
DOI 10.2174/138920306779025675
-
R. B. Cornell and S. G. Taneva, "Amphipathic Helices as Mediators of the Membrane Interaction of Amphitropic Proteins, and as Modulators of Bilayer Physical Properties", Current Protein and Peptide Science, vol. 7, pp. 539-552, 2006. (Pubitemid 44883931)
-
(2006)
Current Protein and Peptide Science
, vol.7
, Issue.6
, pp. 539-552
-
-
Cornell, R.B.1
Taneva, S.G.2
-
33
-
-
0032702675
-
A 13-amino acid amphipathic α-helix is required for the functional interaction between the transcriptional repressor Mad1 and mSin3A
-
A. L. Eilers, A. N. Billin, J. Li, and D. E. Ayer, "A 13-Amino Acid Amphipathic Alpha-Helix Is Required for the Functional Interaction between the Transcriptional Repressor Mad1 and mSin3A", J. Biological Chemistry, vol. 274, pp. 32750-32756, 1999. (Pubitemid 129535306)
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.46
, pp. 32750-32756
-
-
Eilers, A.L.1
Billin, A.N.2
Liu, J.3
Ayer, D.E.4
-
34
-
-
0019934717
-
The helical hydrophobic moment: A measure of the amphiphilicity of a helix
-
DOI 10.1038/299371a0
-
D. Eisenberg, R. M. Weiss, and T. C. Terwilliger, "The Helical Hydrophobic Moment: A Measure of the Amphiphilicity of a Helix", Nature, vol. 299, no. 5881, pp. 371-374, 1982. (Pubitemid 12012871)
-
(1982)
Nature
, vol.299
, Issue.5881
, pp. 371-374
-
-
Eisenberg, D.1
Weiss, R.M.2
Terwilliger, T.C.3
|