An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks

2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010

Volumn , Issue , 2010, Pages

  Meng, Jia ^a   Zhang, Jianqiu ^a   Chen, Yidong ^b   Huang, Yufei ^a,b  

^a The University of Texas at San Antonio   (United States)

^b UNIVERSITY OF TEXAS HEALTH SCIENCE CENTER AT SAN ANTONIO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN; BREAST CANCER; EXPERIMENTAL CONDITIONS; FACTOR MODEL; ICM ALGORITHMS; ITERATED CONDITIONAL MODES; MICROARRAY DATA; PRIOR KNOWLEDGE; PROTEIN LEVEL; REGULATED GENES; SIMULATED SYSTEM; TARGET GENES; TRANSCRIPTIONAL REGULATION; TRANSCRIPTIONAL REGULATORY NETWORKS;

ALGORITHMS; BAYESIAN NETWORKS; COMPUTER SIMULATION; GENES; SIGNAL PROCESSING; TRANSCRIPTION; TRANSCRIPTION FACTORS;

KNOWLEDGE BASED SYSTEMS;

EID: 79952809349     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/GENSIPS.2010.5719679     Document Type: Conference Paper

References (12)

1. O. Hobert, "Gene regulation by transcription factors and microRNAs," Science, vol. 319, no. 5871, p. 1785, 2008.
2. J. Menga, J. Zhanga, Y. Chenb, and Y. Huanga, "Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model."
3. C. Carvalho, J. Chang, J. Lucas, J. Nevins, Q. Wang, and M. West, "High-dimensional sparse factor modeling: Applications in gene expression genomics," Journal of the American Statistical Association, vol. 103, no. 484, pp. 1438-1456, 2008.
4. E. Sudderth, "Graphical models for visual object recognition and tracking," Ph.D. dissertation, Massachusetts Institute of Technology, 2006.
5. T. Ferguson, "A Bayesian analysis of some nonparametric problems," The annals of statistics, vol. 1, no. 2, pp. 209-230, 1973.
6. N. Socci, D. Lee, and H. Sebastian Seung, "The rectified Gaussian distribution," Advances in Neural Information Processing Systems, pp. 350-356, 1998.
7. X. Cui and G. Churchill, "Statistical tests for differential expression in cDNA microarray experiments," Genome Biol, vol. 4, no. 4, p. 210, 2003.
8. C. Wong, "Differential Expression and Annotation," 2009.
9. V. Matys, E. Fricke, R. Geffers, E. Gossling, M. Haubrock, R. Hehl, K. Hornischer, D. Karas, A. Kel, O. Kel-Margoulis et al., "TRANSFAC (R): transcriptional regulation, from patterns to profiles," Nucleic acids research, vol. 31, no. 1, p. 374, 2003.
10. D. Wilson, V. Charoensawan, S. Kummerfeld, and S. Teichmann, "DBD- taxonomically broad transcription factor predictions: new content and functionality," Nucleic Acids Research, vol. 36, no. Database issue, p. D88, 2008.
11. D. Lindley and A. Smith, "Bayes estimates for the linear model," Journal of the Royal Statistical Society. Series B (Methodological), vol. 34, no. 1, pp. 1-41, 1972.
12. W. Thompson, L. Newberg, S. Conlan, L. McCue, and C. Lawrence, "The Gibbs centroid sampler," Nucleic Acids Research, 2007.