Examining the drought stress transcriptome in cotton leaf and root tissue

Biotechnology Letters

Volumn 33, Issue 4, 2011, Pages 821-828

  Payton, Paxton ^a   Kottapalli, Kameswara Rao ^a,b   Kebede, Hirut ^b,c   Mahan, James R ^a   Wright, Robert J ^b   Allen, Randy D ^d  

^a U S DEPARTMENT OF AGRICULTURE   (United States)

^b TEXAS TECH UNIVERSITY   (United States)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

^d OKLAHOMA STATE UNIVERSITY   (United States)

Author keywords

Cotton; Drought stress; Leaf; Root; Transcript profile

Indexed keywords

CANDIDATE GENES; CONTROL PLANTS; DROUGHT STRESS; ECTOPIC EXPRESSIONS; EXPRESSION PATTERNS; GENE EXPRESSION PROFILES; GLASSHOUSE CONDITIONS; LEAF; LEAF WATER POTENTIAL; METABOLIC PATHWAYS; NET CARBON ASSIMILATION; REGULATORY PATHWAY; ROOT; ROOT TISSUES; SIMILAR PATTERN; STRESS RESPONSE; STRESS-INDUCED; TISSUE-SPECIFIC EXPRESSION; TRANSCRIPT PROFILE; TRANSCRIPTOMES; WATER DEFICITS; YIELD QUALITY;

COTTON; DROUGHT; FORESTRY; HISTOLOGY; METABOLISM; PLANTS (BOTANY); TISSUE;

GENE EXPRESSION;

ARTICLE; COTTON; DROUGHT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; METABOLISM; PLANT LEAF; PLANT ROOT; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

DROUGHTS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GOSSYPIUM; PLANT LEAVES; PLANT ROOTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

GOSSYPIUM HIRSUTUM;

EID: 79952760671     PISSN: 01415492     EISSN: 15736776     Source Type: Journal    
DOI: 10.1007/s10529-010-0499-y     Document Type: Article

References (32)

1. Abe H, Urao T, Ito T, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2002) Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling. Plant Cell 15: 1-16.
2. Araus JL, Slafer GA, Reynolds MP, Royo C (2002) Plant breeding and drought in C3 cereals: what should we breed for? Ann Bot-Lond 89: 925-940.
3. Bray EA (2002) Classification of genes differentially expressed during water-deficit stress in Arabidopsis thaliana: an analysis using microarray and differential expression data. Ann Bot-Lond 89: 803-811.
4. Bray EA (2004) Genes commonly regulated by water-deficit stress in Arabidopsis thaliana. J Exp Bot 55: 2331-2341.
5. Catterou M, Dubois F, Schaller H, Aubanelle L, Vilcot B, Sangwan-Norreel BS, Sangwan RS (2001) Brassinosteroids, microtubules and cell elongation in Arabidopsis thaliana. I. Molecular, cellular and physiological characterization of the Arabidopsis bull mutant, defective in the delta 7-sterol-C5-desaturation step leading to brassinosteroid biosynthesis. Planta 212: 659-672.
6. Charlton AJ, Donarski JA, Harrison M, Jones SA, Godward J, Oehlschlager S, Arques JL, Ambrose M, Chinoy C, Mullineaux PM et al (2008) Responses of the pea (Pisum sativum L.) leaf metabolome to drought stress assessed by nuclear magnetic resonance spectroscopy. Metabolomics 4: 312-327.
7. Cramer GR, Ergül A, Grimplet J, Tillett RL, Tattersall EA, Bohlman MC, Vincent D, Sonderegger J, Evans J, Osborne C, Quilici D, Schlauch KA, Schooley DA, Cushman JC (2007) Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles. Funct Integr Genomics 7: 111-134.
8. Davletov S, Schlauch K, Coutu J, Mittler R (2005) The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol 139: 847-856.
9. Edwards D, Batley J (2004) Plant bioinformatics: from genome to phenome. Trends Biotech 225: 232-237.
10. Hamel LP, Nicole M, Sritubtim S, Morency M-J, Ellis M, Ehlting J, Beaudoin N, Barbazuk B, Klessig D, Lee J, Martin G, Mundy J, Ohashi Y, Scheel D, Sheen J, Xing T, Zhang S, Seguin S, Ellis B (2006) Ancient signals: comparative genomics of plant MAPK and MAPKK gene families. Trends Plant Sci 11: 192-198.
11. Jia J, Junjie F, Jun Z, Xin Z, Junling H, Jianhua W, Meng W, Ying Z, Xiaoping C, Jinpeng Z, Jinfeng Z, Zhen S, Yuping L, Guoying W (2006) Annotation and expression profile analysis of 2073 full-length cDNAs from stress-induced maize (Zea mays L.) seedlings. Plant J 48: 710-727.
12. Kottapalli KR, Rakwal R, Shibato J, Burow G, Burke J, Puppala N, Burow M, Payton P (2009) Proteomics of water-deficit stress in U. S. peanut mini-core accessions. Plant Cell Environ 32: 380-407.
13. Mantri NL, Ford R, Coram TE, Pang EC (2007) Transcriptional profiling of chickpea genes differentially regulated in response to high-salinity, cold and drought. BMC Genomics 8: 303.
14. Mayes S, Parsley K, Sylvester-Bradley R, May S, Foulkes J (2005) Integrating genetic information into plant breeding programmes: how will we produce varieties from molecular variation, using bioinformatics? Ann Appl Biol 146: 223-237.
15. Moinuddin RA, Renu K-C (2004) Osmotic adjustment in chickpea in relation to seed yield and yield parameters. Crop Sci 44: 449-455.
16. Moinuddin RA, Fisher A, Sayre KD, Reynolds MP (2005) Osmotic adjustment in wheat in relation to grain yield under water deficit environments. Agron J 97: 1062-1071.
17. Niknam SR, Ma Q, Turner DW (2003) Osmotic adjustment and seed yield of Brassicanapus and B. juncea genotypes in a water-limited environment in south-western Australia. Aust J Exp Agr 43: 1127-1135.
18. Pan JW, Ye D, Wang LL, Hua J, Zhao GF, Pan WH, Han N, Zhu MY (2004) Root border cell development is a temperature-insensitive and Al-sensitive process in barley. Plant Cell Physiol 45: 751-760.
19. Pendley S, Assmann SM (2004) The Arabidopsis putative G protein-coupled receptor GCR1 interacts with the G protein α subunit GPA1 and regulates abscisic acid signaling. Plant Cell 16: 1616-1632.
20. Rizhsky L, Liang H, Shuman J, Shulaev V, Davletova S, Mittler R (2004) When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress. Plant Physiol 134: 1683-1696.
21. Seki M, Kamei A, Yamaguchi-Shinozaki K, Shinozaki K (2003) Molecular responses to drought, salinity and frost: common and different paths for plant protection. Curr Opin Biotech 14: 194-199.
22. Shinozaki K, Yamaguchi-Shinozaki K (1999) Molecular response to drought stress. In: Shinozaki K, Yamaguchi-Shinozaki K (eds) Molecular responses to cold, drought, hear and salt stress in higher plants. Landes Company, Texas, pp 11-25.
23. Shinozaki K, Yamaguchi-Shinozaki K (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58: 221-227.
24. Subbarao GV, Chauhan YS, Johnson C (2000) Patterns of osmotic adjustment in pigeonpea-its importance as a mechanism of drought resistance. Eur J Agron 12: 239-249.
25. Taliercio EW, Romano G, Scheffler J, Ayre BG (2009) Expression of genes associated with carbohydrate metabolism in cotton stems and roots. BMC Plant Biol 9: 11.
26. Thimm O, Bläsing O, Gibon Y, Nagel A, Meyer S, Krüger P, Selbig J, Müller LA, Rhee SY, Stitt M (2004) MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 37: 914-939.
27. Udall JA, Swanson JM, Haller K, Rapp RA (2006) A global assembly of cotton ESTs. Genome Res 16: 441-450.
28. Urano K, Kurihara Y, Seki M, Shinozaki K (2010) 'Omics' analyses of regulatory networks in plant abiotic stress responses. Curr Opin Plant Biol 13: 132-138.
29. Valliyodan B, Nguyen HT (2006) Understanding regulatory networks and engineering for enhanced drought tolerance in plants. Curr Opin Plant Biol 9: 189-195.
30. Wang X-Q, Ullah H, Jones AM, Assmann S (2001) G protein regulation of ion channels and abscisic acid signaling in Arabidopsis guard cells. Science 292: 2070-2072.
31. Xu H, Li Y, Yan Y, Wang K, Gao Y, Hu Y (2010) Genome-scale identification of soybean BURP domain-containing genes and their expression under stress treatments. BMC Plant Biol 10: 197.
32. Zhu JK (2002) Salt and drought stress signal transduction in plants. Ann Rev Plant Biol 53: 247-273.