Hierarchical Y-SNP assay to study the hidden diversity and phylogenetic relationship of native populations in South America

Forensic Science International: Genetics

Volumn 5, Issue 2, 2011, Pages 100-104

  Geppert, Maria ^a   Baeta, Miriam ^b   Núñez, Carolina ^b   Martínez Jarreta, Begoña ^b   Zweynert, Sarah ^a   Cruz, Omar Wladimir Vacas ^c   González Andrade, Fabricio ^d   González Solorzano, Jorge ^e   Nagy, Marion ^a   Roewer, Lutz ^a  

^a CHARITÉ UNIVERSITÄTSMEDIZIN BERLIN   (Germany)

^b UNIVERSITY OF ZARAGOZA   (Spain)

^c PONTIFICIA UNIVERSIDAD CATÓLICA DEL ECUADOR   (Ecuador)

^d UNIVERSIDAD CENTRAL DEL ECUADOR   (Ecuador)

^e HOSPITAL METROPOLITANO   (Ecuador)

Author keywords

Ecuador; Minisequencing; Native Americans; SNaPshot; South America; Y SNPs

Indexed keywords

AMERICAN INDIAN; ARTICLE; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; INDIGENOUS PEOPLE; MALE; NUCLEIC ACID ANALYSIS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTH AMERICA; Y CHROMOSOME;

CHROMOSOMES, HUMAN, Y; DNA FINGERPRINTING; ECUADOR; ELECTROPHORESIS, CAPILLARY; ETHNIC GROUPS; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MALE; PHYLOGENY; PHYLOGEOGRAPHY; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; TANDEM REPEAT SEQUENCES;

EID: 79952706056     PISSN: 18724973     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fsigen.2010.08.016     Document Type: Article

References (27)

1. T.M. Karafet, F.L. Mendez, M.B. Meilerman, P.A. Underhill, S.L. Zegura, M.F. Hammer, New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree, Genome Res. 18 (2008) 830-838. (Pubitemid 351645073)
2. J.H. Greenberg, C.G.T. Ii, S.L. Zegura, L. Campbell, J.A. Fox, W.S. Laughlin, E.K.J.E. Szathmary, K.M. Weiss, E. Woolford, The settlement of the Americas: a comparison of the linguistic, dental, and genetic evidence [and comments and reply], Curr. Anthropol. 27 (1986) 477-497.
3. T.M Karafet, S.L. Zegura, O. Posukh, L. Osipova, A. Bergen, J. Long, D. Goldman, W. Klitz, S. Harihara, P. de Knijff, V. Wiebe, R.C. Griffiths, A.R. Templeton, M.F. Hammer, Ancestral Asian source(s) of new world Y-chromosome founder haplotypes, Am. J. Hum. Genet. 64 (1999) 817-831. (Pubitemid 30460425)
4. S.L. Zegura, T.M. Karafet, L.A. Zhivotovsky, M.F. Hammer, High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas, Mol. Biol. Evol. 21 (2004) 164-175.
5. D.A Merriwether, F. Rothhammer, R.E. Ferrell, Distribution of the four founding lineage haplotypes in Native Americans suggests a single wave of migration for the New World, Am. J. Phys. Anthropol. 98 (1995) 411-430.
6. C.J. Mulligan, A. Kitchen, M.M. Miyamoto, Updated three-stage model for the peopling of the Americas, PLoS One 3 (2008) e3199, doi:10.1371/journal.pone. 0003199.
7. E Tarazona-Santos, D.R. Carvalho-Silva, D. Pettener, D. Luiselli, G.F. De Stefano, C.M. Labarga, O. Rickards, C. Tyler-Smith, S.D.J. Pena, F.R. Santos, Genetic differentiation in South Amerindians is related to environmental and cultural diversity: evidence from the Y chromosome, Am. J. Hum. Genet. 68 (2001) 1485-1496. (Pubitemid 32510624)
8. F.M. Salzano, Molecular variability in Amerindians: widespread but uneven information, An. Acad. Bras. Cienc. 74 (2002) 223-263. (Pubitemid 135695070)
9. D.A. Bolnick, D.I. Bolnick, D.G. Smith, Asymmetric male and female genetic histories among native Americans from Eastern North America, Mol. Biol. Evol. 23 (2006) 2161-2174. (Pubitemid 44536824)
10. M. Jobling, M.E. Hurles, C. Tyler-Smith, Human Evolutionary Genetics: Origins, Peoples and Disease, Garland Science Publishing, London/New York, 2004, p. 523.
11. F. Gonzalez-Andrade, L. Roewer, S. Willuweit, D. Sanchez, B. Martinez-Jarreta, YSTR variation among ethnic groups from Ecuador: Mestizos, Kichwas, Afro-Ecuadorians and Waoranis, Forensic Sci. Int. Genet. 3 (2009) e83-e91. , doi:10.1016/j.fsigen.2008.08.003.
12. T.J. Palha, E.M. Rodrigues, S.E. Dos Santos, Y-STR haplotypes of native American populations from the Brazilian Amazon region, Forensic Sci. Int. Genet., in press.
13. P.A. Underhill, L. Jin, R. Zemans, P.J. Oefner, L.L. Cavalli-Sforza, A pre-Columbian Y chromosome-specific transition and its implications for human evolutionary history, Proc. Natl. Acad. Sci. U.S.A. 93 (1996) 196-200. (Pubitemid 26038126)
14. J.T. Lell, M.D. Brown, T.G. Schurr, R.I. Sukernik, Y.B. Starikovskaya, A. Torroni, L.G. Moore, G.M. Troup, D.C. Wallace, Y chromosome polymorphisms in native American and Siberian populations: identification of native American Y chromosome haplotypes, Hum. Genet. 100 (1997) 536-543.
15. A.R. Marrero, W.A. Silva-Junior, C.M. Bravi, M.H. Hutz, M.L. Petzl-Erler, A. Ruiz- Linares, F.M. Salzano, M.C. Bortolini, Demographic and evolutionary trajectories of the Guarani and Kaingang natives of Brazil, Am. J. Phys. Anthropol. 132 (2007) 301-310. (Pubitemid 46167722)
16. S. Mazieres, E. Guitard, E. Crubezy, J.M. Dugoujon, M.C. Bortolini, S.L. Bonatto, M.H. Hutz, E. Bois, F. Tiouka, G. Larrouy, F.M. Salzano, Uniparental (mtDNA, Y-chromosome) polymorphisms in French Guiana and two related populations - implications for the region's colonization, Ann. Hum. Genet. 72 (2008) 145-156.
17. A. Ruiz-Linares, D. Ortiz-Barrientos, M. Figueroa, N. Mesa, J.G. Munera, G. Bedoya, I.D. Velez, L.F. Garcia, A. Perez-Lezaun, J. Bertranpetit, M.W. Feldman, D.B. Goldstein, Microsatellites provide evidence for Y chromosome diversity among the founders of the New World, Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 6312-6317. (Pubitemid 29256662)
18. N.O. Bianchi, C.I. Catanesi, G. Bailliet, V.L. Martinez-Marignac, C.M. Bravi, L.B. Vidal-Rioja, R.J. Herrera, J.S. Lopez-Camelo, Characterization of ancestral and derived Y-chromosome haplotypes of New World native populations, Am. J. Hum. Genet. 63 (1998) 1862-1871. (Pubitemid 30415748)
19. M. Brion, B. Sobrino, A. Blanco-Verea, M.V. Lareu, A. Carracedo, Hierarchical analysis of 30 Y-chromosome SNPs in European populations, Int. J. Legal Med. 119 (2005) 10-15.
20. V. Onofri, F. Alessandrini, C. Turchi, M. Pesaresi, L. Buscemi, A. Tagliabracci, Development of multiplex PCRs for evolutionary and forensic applications of 37 human Y chromosome SNPs, Forensic Sci. Int. 157 (2006) 23-35.
21. M. Geppert, J. Edelmann, R. Lessig, The Y-chromosomal STRs DYS481, DYS570, DYS576 and DYS643, Legal Med. 11 (2009) S109-S110.
22. K. Lindblad-Toh, E. Winchester, M.J. Daly, D.G. Wang, J.N. Hirschhorn, J.P. Laviolette, K. Ardlie, D.E. Reich, E. Robinson, P. Sklar, N. Shah, D. Thomas, J.B. Fan, T. Gingeras, J. Warrington, N. Patil, T.J. Hudson, E.S. Lander, Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse, Nat. Genet. 24 (2000) 381-386.
23. M.C. Bortolini, F.M. Salzano, M.G. Thomas, S. Stuart, S.P. Nasanen, C.H. Bau, M.H. Hutz, Z. Layrisse, M.L. Petzl-Erler, L.T. Tsuneto, K. Hill, A.M. Hurtado, D. Castro-de- Guerra, M.M. Torres, H. Groot, R. Michalski, P. Nymadawa, G. Bedoya, N. Bradman, D. Labuda, A. Ruiz-Linares, Y-chromosome evidence for differing ancient demographic histories in the Americas, Am. J. Hum. Genet. 73 (2003) 524-539. (Pubitemid 37076267)
24. A. Blanco-Verea, J.C. Jaime, M. Brión, A. Carracedo, Y-chromosome lineages in native South American population, Forensic Sci. Int. Genet. 4 (2010) 187-193.
25. G. Bailliet, V. Ramallo, M. Muzzio, A. Garcia, M.R. Santos, E.L. Alfaro, J.E. Dipierri, S. Salceda, F.R. Carnese, C.M. Bravi, N.O. Bianchi, D.A. Demarchi, Brief communication: restricted geographic distribution for Y-Q* paragroup in South America, Am. J. Phys. Anthropol. 140 (2009) 578-582.
26. J.T. Lell, R.I. Sukernik, Y.B. Starikovskaya, B. Su, L. Jin, T.G. Schurr, P.A. Underhill, D.C. Wallace, The dual origin and Siberian affinities of native American Y chromosomes, Am. J. Hum. Genet. 70 (2002) 192-206. (Pubitemid 34031708)
27. B. Pakendorf, I.N. Novgorodov, V.L. Osakovskij, A.P. Danilova, A.P. Protod'jakonov, M. Stoneking, Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts, Hum. Genet. 120 (2006) 334-353.