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Volumn 24, Issue 4, 2011, Pages 405-409

A geometry-based generic predictor for catalytic and allosteric sites

Author keywords

alignment; amyloid; computation; matrix; simulation

Indexed keywords

ALLOSTERIC ENZYMES; ALLOSTERIC SITE; ALLOSTERY; AMYLOID; CATALYTIC RESIDUE; CENTRALITY MEASURES; COMPUTATION; EFFECTOR SITE; FREE PARAMETERS; GEOMETRICAL INTERPRETATION; INTERACTION GRAPHS; MATRIX; NON-CATALYTIC; POTENT DRUGS; SIMULATION; STRUCTURE-BASED;

EID: 79952685998     PISSN: 17410126     EISSN: 17410134     Source Type: Journal    
DOI: 10.1093/protein/gzq115     Document Type: Article
Times cited : (28)

References (22)
  • 4
    • 20344370764 scopus 로고    scopus 로고
    • Allosteric mechanisms of signal transduction
    • DOI 10.1126/science.1108595
    • Changeux, J.P. and Edelstein, S.J. (2005) Science, 308, 1424-1428. doi:10.1126/science.1108595. (Pubitemid 40791288)
    • (2005) Science , vol.308 , Issue.5727 , pp. 1424-1428
    • Changeux, J.-P.1    Edelstein, S.J.2
  • 5
    • 34249308113 scopus 로고    scopus 로고
    • How accurate and statistically robust are catalytic site predictions based on closeness centrality?
    • DOI 10.1186/1471-2105-8-153
    • Chea, E. and Livesay, D.R. (2007) BMC Bioinformatics, 8, 153. doi:10.1186/1471-2105-8-153. (Pubitemid 46805742)
    • (2007) BMC Bioinformatics , vol.8 , pp. 153
    • Chea, E.1    Livesay, D.R.2
  • 6
    • 48249141040 scopus 로고    scopus 로고
    • doi:10.1110/ps.03259908
    • Cui, Q. and Karplus, M. (2008) Protein Sci., 17, 1295-1307. doi:10.1110/ps.03259908.
    • (2008) Protein Sci. , vol.17 , pp. 1295-1307
    • Cui, Q.1    Karplus, M.2
  • 11
    • 34250831648 scopus 로고    scopus 로고
    • Detection of pockets on protein surfaces using small and large probe spheres to find putative ligand binding sites
    • DOI 10.1002/prot.21283
    • Kawabata, T. and Go, N. (2007) Proteins, 68, 516-529. doi:10.1002/prot.21283. (Pubitemid 46981944)
    • (2007) Proteins: Structure, Function and Genetics , vol.68 , Issue.2 , pp. 516-529
    • Kawabata, T.1    Go, N.2
  • 13
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • DOI 10.1093/bioinformatics/btl158
    • Li, W. and Godzik, A. (2006) Bioinformatics, 22, 1658-1659. doi:10.1093/bioinformatics/btl158. (Pubitemid 43985301)
    • (2006) Bioinformatics , vol.22 , Issue.13 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 15
    • 41449115497 scopus 로고    scopus 로고
    • Fast dynamics perturbation analysis for prediction of protein functional sites
    • DOI 10.1186/1472-6807-8-5
    • Ming, D., Cohn, J.D. and Wall, M.E. (2008) BMC Struct. Biol., 8, 5. doi:10.1186/1472-6807-8-5. (Pubitemid 351457968)
    • (2008) BMC Structural Biology , vol.8 , pp. 5
    • Ming, D.1    Cohn, J.D.2    Wall, M.E.3
  • 18
    • 32344434479 scopus 로고    scopus 로고
    • The changing landscape of protein allostery
    • DOI 10.1016/j.sbi.2006.01.003, PII S0959440X06000042
    • Swain, J.F and Gierasch, L.M. (2006) Curr. Opin. Struct. Biol., 16, 102-108. doi:10.1016/j.sbi.2006.01.003. (Pubitemid 43221878)
    • (2006) Current Opinion in Structural Biology , vol.16 , Issue.1 , pp. 102-108
    • Swain, J.F.1    Gierasch, L.M.2
  • 20
    • 0015528157 scopus 로고
    • First published on 1972/02/29
    • Weber, G. (1972) Biochemistry, 11, 864-878. First published on 1972/02/29.
    • (1972) Biochemistry , vol.11 , pp. 864-878
    • Weber, G.1
  • 22
    • 34447645811 scopus 로고    scopus 로고
    • A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites
    • DOI 10.1186/1471-2105-8-S4-S9
    • Xie, L. and Bourne, P.E. (2007) BMC Bioinformatics, 8(Suppl. 4), S9. doi:10.1186/1471-2105-8-S4-S9. (Pubitemid 351833828)
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 4
    • Xie, L.1    Bourne, P.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.